BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29450.1 Length=934 Score E Sequences producing significant alignments: (Bits) Value Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1 1295 0.0 Ahg320713 jgi|Araly1|320713|fgenesh1_pm.C_scaffold_4000770 732 0.0 Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 636 0.0 > Ahg481861 jgi|Araly1|481861|fgenesh2_kg.4__921__AT2G29450.1 Length=873 Score = 1295 bits (701), Expect = 0.0 Identities = 818/872 (94%), Gaps = 18/872 (2%) Strand=Plus/Plus Query 71 aatggctgagaaagaagaagtgaagCTTTTGGGGATATGGGCGAGCCCTTTTAGCCGTCG 130 |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 AATGGCGGAGAAAGACCAAGTGAAGCTTTTGGGAATATGGGCGAGCCCTTTTAGCCGTCG 60 Query 131 GGTCGAGATGGCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAGAGATACTGGA 190 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| Sbjct 61 GGTCGAGATGGCTCTCAAACTCAAAGGCATACCGTACGATTACGTGGAAGAAATATTGGA 120 Query 191 GAACAAAAGCCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGT 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAACAAAAGCCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGT 180 Query 251 CCACAATGGTAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTG 310 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 181 CCACAATGGTAAAACCATTCTTGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTG 240 Query 311 GCCACAAAATCCAATTCTCCCTCAAGATCCTTATGAAAGATCCAAAGCTCGTTTCTTTGC 370 |||||| |||||||||||||||||||||||||| || |||||||||||||| |||||||| Sbjct 241 GCCACACAATCCAATTCTCCCTCAAGATCCTTACGAGAGATCCAAAGCTCGATTCTTTGC 300 Query 371 TAAACTCGTCGATGAACAGATTATGAACGTGGGGTTTATATCAATGGCAAGAGCAGACGA 430 |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 301 AAAACTCGTCGATGAACAGATTATGAATGTGGGGTTTGTATCAATGGCAAGAGCAGACGA 360 Query 431 GAAAGGAAGAGAAGTTTTAGCCGAGCAGGTAAGAGAACTGATTATGTATCTCGAGAAAGA 490 ||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||| Sbjct 361 GAAAGGAAGAGAAGTTTTAGCCGAGCAGGCAAGAGAACTAATCATGTATCTTGAGAAAGA 420 Query 491 ACTTGTCGGAAAAGATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGG 550 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 421 ACTTGTCGGAAAAGATTACTTCGGTGGCAAGACTGTCGGATTCTTGGACTTTGTGGCCGG 480 Query 551 AAGTTTAATTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTAC 610 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AAGTTTGATTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTAC 540 Query 611 AGAGGAGAAGTTTCCAGAGTTCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTGT 670 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 541 AGAGGAGAAGTTTCCAGAATTCAAGAGATGGGTTAAGAATTTGGAGAAGGTTGAGATTGT 600 Query 671 TAAAGATTGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGAG 730 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 601 TAAAGATTGTGTTCCACCAAGAGAGAAACATGTAGAACACATGAACTATATGGCAGAGAG 660 Query 731 AGTGAGATCTTCTTAAG-AA--AA--CAA-A--TCATGTTTAGTTCTTGATCATGCAatg 782 |||||||||||||||| || || ||| | ||||||||||||||||||||||||||| Sbjct 661 AGTGAGATCTTCTTAATTAATTAAGACAACAAATCATGTTTAGTTCTTGATCATGCAATG 720 Query 783 tttgtatggttatgttgttgtttattttattgaata----t--ctttgtatgttgtgtgg 836 ||||||| ||| |||||||||||||| || |||||| | |||| |||||||||||| Sbjct 721 TTTGTATAGTTTTGTTGTTGTTTATTCTAATGAATAAGGATTTCTTTTTATGTTGTGTGG 780 Query 837 ttgAGA-AGTGAGGTTTTATCATCATCTCTCACGTTATCTTATTTGGTCCC-A-GC-CAC 892 |||||| ||||||| ||||||||||| |||||||||||||||||||||||| | | ||| Sbjct 781 TTGAGAGAGTGAGGATTTATCATCATTTCTCACGTTATCTTATTTGGTCCCCACGGTCAC 840 Query 893 TATTTAGAATTAATGGTAAAGCTTTGGCTATT 924 | | |||||||||||||||||||||||||||| Sbjct 841 TCTCTAGAATTAATGGTAAAGCTTTGGCTATT 872 > Ahg320713 jgi|Araly1|320713|fgenesh1_pm.C_scaffold_4000770 Length=648 Score = 732 bits (396), Expect = 0.0 Identities = 539/606 (89%), Gaps = 18/606 (3%) Strand=Plus/Plus Query 141 GCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAGAGATA-CTGGAGAACAAAAG 199 ||||||||||||||||||||| ||||| ||||||||||| | | | |||| |||||| Sbjct 52 GCTCTCAAACTCAAAGGCATAAATTACGATTACGTGGAAGA-AAAGTTTGAGAGCAAAAG 110 Query 200 CCCTTTGCTTCTTGCTCTTAACCCTATTCACAAGAAAGTCCCTGTTCTTGTCCACAATGG 259 | |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 111 CTCTTTGCTTCTTGCTCTAAACCCTATTCACAAGAAGGTCCCTGTTCTTGTTCACAATGG 170 Query 260 TAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACAAAA 319 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 171 TAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGACGAGACTTGGCCACACAA 230 Query 320 TCCAATTCTCCCTCAAGATCCTTATGAAAGATCCAAAGCTCGTTTCTTTGCTAAACTCGT 379 ||| |||||||||||||||||||| || |||||||||||||| |||||||| |||||||| Sbjct 231 TCCCATTCTCCCTCAAGATCCTTACGAGAGATCCAAAGCTCGATTCTTTGCAAAACTCGT 290 Query 380 CGATGAACAGATTATGAACGTGGGGTTTATATCAATGGCAAGAGCAGACGAGAAAGGAAG 439 |||||||||||||| ||| ||||| ||| |||||||||||| ||| || ||||||||||| Sbjct 291 CGATGAACAGATTACGAATGTGGGTTTTGTATCAATGGCAAAAGCGGATGAGAAAGGAAG 350 Query 440 AGAAGTTTTAGCCGAGCAGGTAAGAGAACTGATTATGTATCTCGAGAAAGAACTTGTCGG 499 ||||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 351 AGAAGTTTTGGTCGAGCAGATAAGAGAACTAATTATGTATCTCGAGAAAGAACTTGTCG- 409 Query 500 AAAA-GATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGGAAGTTTAA 558 |||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| | Sbjct 410 AAAATGATTACTTCGGCGGTAAGACTGTCGGATTCTTGGACTTTGTGGCCGGAAGTTTGA 469 Query 559 TTCCGTTTTGTTTGGAGAGAGGTTGGGAAGGAATAGGATTGGAAGTGATTACAGAGGAGA 618 |||||||||||| || || ||| | | || | ||| ||||||||||||| |||| Sbjct 470 TTCCGTTTTGTT-GG-GA-AGGCAG--A-GG--T----TTGCAAGTGATTACAGAAGAGA 517 Query 619 AGTTTCCAGAGT-TCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTGTTAAAGAT 677 |||||||||||| | || | |||||| | |||||||||||||||||||||||| |||||| Sbjct 518 AGTTTCCAGAGTAT-AACAAATGGGTGAAGAATTTGGAGAAGGTTGAGATTGTAAAAGAT 576 Query 678 TGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGAGAGTGAGA 737 ||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| Sbjct 577 TGTATTCCACCAAGAGAGAAACATGTTGAACACATGAACTATATGGCAAAGAGAATTAGA 636 Query 738 TCTTCT 743 |||||| Sbjct 637 TCTTCT 642 > Ahg481860 jgi|Araly1|481860|fgenesh2_kg.4__920__AT2G29440.1 Length=737 Score = 636 bits (344), Expect = 0.0 Identities = 570/677 (84%), Gaps = 24/677 (4%) Strand=Plus/Plus Query 81 aaa-gaagaagtgaagCTTTTGGGGATATGGGCGAGCCCTTTTAGCCGTCGGGTCGAGAT 139 ||| || |||||||||||||| || | |||||| |||||||| ||||||||| ||||||| Sbjct 36 AAATGAGGAAGTGAAGCTTTTAGGAACATGGGCAAGCCCTTTCAGCCGTCGGATCGAGAT 95 Query 140 GGCTCTCAAACTCAAAGGCATACCGTACGAGTACGTGGAAG-AGATACTGGAGAACAAAA 198 ||||||||||||||||||| |||||||||| ||| |||| | |||| ||||| || || | Sbjct 96 GGCTCTCAAACTCAAAGGCGTACCGTACGAATACTTGGAGGAAGAT-CTGGACAATAAGA 154 Query 199 GCCCTTTGCTTCTTGCTCTTAA-CCCTATTCACAAGAAAG-TCCCTGTTCTTGTCCACAA 256 || ||||||||||||||| ||| ||||||||||||| ||| ||||||||||||| ||||| Sbjct 155 GCTCTTTGCTTCTTGCTC-TAAGCCCTATTCACAAG-AAGATCCCTGTTCTTGTTCACAA 212 Query 257 TGGTAAAACCATTCTCGAGTCTCATGTGATTCTTGAATACATCGATGAGACTTGGCCACA 316 ||||||||||||| ||||||| |||||||| || ||||||||||||||||||||| ||| Sbjct 213 TGGTAAAACCATTATCGAGTCGCATGTGATCCTCGAATACATCGATGAGACTTGGAAACA 272 Query 317 AAATCCAATTCTCCCTCAAGATCCTTAT-GAAAGATCCAAAGCTCGTTTCTTTGCTAAAC 375 ||||| ||||| ||||| ||||||| | |||||||||| ||||| |||| || |||| Sbjct 273 CAATCCCATTCTTCCTCAGGATCCTT-TCCAAAGATCCAAGGCTCGAGTCTTAGCAAAAC 331 Query 376 TCGTCGATGAACAGATTA-TGAACGTGGGGTTTATATCAATGGC-AAGAGCAGACGAGAA 433 |||| |||||||||| || | || || |||||| ||| |||| || | | | ||||| Sbjct 332 TCGTTGATGAACAGA-TAGTAAATGTCGGGTTTGCCTCACTGGCTAA-A--ACA-GAGAA 386 Query 434 AGGAAGAGAAGTTTTAG-CCGAGCAGGTAAGAGAACTGATTATGTA-TCTCGAGAAAGAA 491 ||||||||| ||||| | ||||||| ||||||| |||||||| | |||||| |||||| Sbjct 387 AGGAAGAGAGGTTTT-GATCGAGCAGACAAGAGAATTGATTATG-AGTCTCGAAAAAGAA 444 Query 492 CTTGTCGGAAAAGATTACTTCGGAGGCAAGACTGTCGGATTCTTGGACTTTGTCGCCGGA 551 || | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 445 CTCGCCGGAAAAGATTACTTCGGGGGCAAGACAGTCGGATTCTTGGACTTTGTCGCCGGA 504 Query 552 AGTTTAATTCCGTTTTGTTTGGAGAGAGG-TTGGGAAGGAATAGGATTGGA-AGTGATTA 609 ||| | || ||||||||||||||||| || |||||||||||| ||| |||| | |||||| Sbjct 505 AGTATGATCCCGTTTTGTTTGGAGAG-GGCTTGGGAAGGAATGGGAGTGGAGA-TGATTA 562 Query 610 CAGAGGAGAAGTTTCCAGAGTTCAAGAGATGGGTTAGGAATTTGGAGAAGGTTGAGATTG 669 ||||| | ||||||||||| | ||| | |||||| | ||| || || |||||||||| | Sbjct 563 CAGAGAAAAAGTTTCCAGAATACAACAAATGGGTGAAGAAGCTGAAGGAGGTTGAGATCG 622 Query 670 TTAAAGATTGTGTTCCACCAAGAGAGGAACATGTAGAACACATGAACTATATGGCAGAGA 729 || |||||| |||| ||||||||| ||||| | |||||||||||| |||||||||||| Sbjct 623 TTGTTGATTGTATTCCTCCAAGAGAGAAACATATTGAACACATGAACAATATGGCAGAGA 682 Query 730 GAGTGAGATCTTCTTAA 746 | | ||||| ||||| Sbjct 683 AAATCAGATCCGCTTAA 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34653731553 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5