BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29510.1
Length=3008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481867 jgi|Araly1|481867|fgenesh2_kg.4__927__AT2G29510.1 2889 0.0
> Ahg481867 jgi|Araly1|481867|fgenesh2_kg.4__927__AT2G29510.1
Length=3007
Score = 2889 bits (1564), Expect = 0.0
Identities = 1950/2124 (92%), Gaps = 75/2124 (4%)
Strand=Plus/Plus
Query 908 TAGAAGAGATGGGCAGTTTCATCAGACCCCTCGTGCAACTGCGGTCCAACAGAATGAGAA 967
|||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct 902 TAGAAGAGATGGACAGTTTCATGAAACCCCTCGTGCAACTGCATTCCAACAGAATGAGAA 961
Query 968 GAAAGATACTGATGTTAAGATTG-TTCCAAAGACAAGAACTCTCTTTAGTCCATCGAAGC 1026
|||||||||||||||||||| || ||||||| || |||| | ||||||||||||||||||
Sbjct 962 GAAAGATACTGATGTTAAGA-TGCTTCCAAAAACCAGAAGTTTCTTTAGTCCATCGAAGC 1020
Query 1027 CAGATAGTCCTTCTTGCACAAGGATAATATCAAAGAATCTAGCCGAGGATTTTAAGAAGA 1086
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 1021 CAGATAGTCCTTCTTGCACACGGATAATATCAAAGAATCTAGCTGAGGATTTTAAGAAAA 1080
Query 1087 AAGGAGAGAAGTTGGAAGAGAGAATCCGAAATCCTCGTGTTCATGATCTCTTTGGAAAAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1081 AAGGAGAGAAGTTGGAAGAGAGAATCCGAAATCCTCGTGTTCATGATCTTTTTGGAAAAG 1140
Query 1147 AAAAGCCTGCTGCTGTATTTGTACCAGGGATTGTTTCTCAGAAACAGTTTATTGGTTTGT 1206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TAAAGCCTGCTGCTGTATTTGTACCAGGGATTGTTTCTCAGAAACAGTTTATTGGTTTGT 1200
Query 1207 CCAAGTTCTATGATTCGAAAGTGTTACTAGCTGAGCGATTGGCGGAAAGTAACCGAAAGG 1266
|||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1201 CCAAGTTCTATGATTCAAAAGTGTTACTAGCTGAGCGAATGGCGGAAACAAACCGAAAGG 1260
Query 1267 GGTTCACAGAGAGGTTAGCGCATGGGAAAACTGCAGTTCTTGACTCTGATGTAGGTCCTT 1326
| ||| ||||||||||| ||||||||| | ||||||| |||||||||||||||| ||
Sbjct 1261 GATTCCCAGAGAGGTTATTATATGGGAAAAGTACAGTTCTGGACTCTGATGTAGGTCATT 1320
Query 1327 TCCGACGTGAAGCTGATGGAGGAAGTAAGCCATTCTTAAAACGTATCAGCTTCTTATCAG 1386
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1321 TCCGACGCGAAGCTGAT---GGAAGTAAGCCATTCTTAAAACGTATTAGCTTCTTATCAG 1377
Query 1387 AAAGATCATGTTCAGCTCCACGATCAAGAAAGGCTGAATCTAGTCCCTCTAGAAGCAGGA 1446
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1378 AAAGATCATGTTCAGCTCCACGATCAAGAAAGGCGGAATCTAGTCCCTCCAGGAGCAGGA 1437
Query 1447 CTCTAGATAGAAGGTCAACAGAAACATTACCTAAACAGTCAGATCAGAAACCAGCTAAAG 1506
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1438 CTCTAGATAGAAGGTCAACAGAAACATTACCCAAACAGTCAGATCAGAAACTAGCTAAAG 1497
Query 1507 TCT-TATCAGAAAGAGCTAGGAGCATTTCACCATTTCGCCGACTCAGCTTCAGCATTGGA 1565
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 T-TGTATCAGAAAGAGCAAGGAGCATTTCACCATTTCGCCGACTCAGCTTCAGCATTGGA 1556
Query 1566 AAGTCCAGTAAAAACTCCAACACCGAAGATGCTAAGACTCCTCCACACTTAAGCACAGCA 1625
|||||||| |||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 1557 AAGTCCAGCAAAAACTCCAGCGCCGAAGATGCTAAGAATCCTCCACACTTAAGCACAGCA 1616
Query 1626 CTTATTTCATCACGAGCTGGTTTAGACAATCCATCTGCCTCTTCTTTCAGTGACAGCTCT 1685
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1617 CTTATTTCATCACGAGCTGGTTTAGAGAATCCATCTGCCTCTTCTTTCAGTGACAGCTCT 1676
Query 1686 TCTTTTGATAAAACCAGTGCAGCAAACAGAGGCAGGTCTAGTCCATTGAGAAGGTTACTC 1745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1677 TCTTTTGATAAAACCAGTGCAGCAAACAGAGGCAGGTCTAGTCCGTTGAGAAGGTTACTC 1736
Query 1746 GATCCTTTAATAAAACCAAAATCAAGCCACTCATGTAGATCTCCTGAGCCATCAC-TAAA 1804
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1737 GATCCTTTAATGAAACCAAAATCAACCCACTCATGTAGATCTCCTGAGCCATCACATAA- 1795
Query 1805 GGAAGCACCTTCAAGTCAAC-----CAT---CTT-C-G----TCA----TC--C-T--T- 1840
||||||||||||||| |||| ||| ||| | | ||| || | | |
Sbjct 1796 GGAAGCACCTTCAAGGCAACAATAGCATATTCTTTCTGAGAGTCAACCATCTTCGTCGTC 1855
Query 1841 --T-CTGTCGAGAAATGGAAAATCTTCAACTGTTCAGGCTCTATTTCGTGTGACATCTAA 1897
| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1856 CCTTCTGTCGAGAAATGGAAGATCTTCAACTGTTCAGGCTCTATTTCGAGTGACATCTAA 1915
Query 1898 GAATGATCAACCACTCTTCACTTTTGCGGTTGAAAAGGAACAAAGTATTACAGCAGCTAC 1957
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1916 GAATGATCAACCACTTTTCACTTTTGCGGTTGAAAAGGAACAAAGTATTACAGCAGCCAC 1975
Query 1958 AATAAGAAAACAGACTCTCCCAGAGAAGGAAGACTATGGACACAAGTATACTTTTTTCAC 2017
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1976 AATAAGAAAACAGACTCCCCCAGAGAAGGAAGACTCTGGACTCAAGTATACTTTTTTCAC 2035
Query 2018 TGTTCAAGAAGTACAGAAGAAAAATGCAAAATGGATGAACAACAGCAGGAAAGTCCAAAG 2077
|||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 2036 TGTTCAAGAAGTACAGAAGAAAAATGCAAAATGGATGAACCACAACAGGAAGGTCCAAAG 2095
Query 2078 CCAAGAGTACACATCCAACATTGTCGCTCAGATGAGAGTCTCAGATCCTAAGCCTCT-AT 2136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2096 CCAAGAGTACACATCCAACATTGTCGCTCAGATGAGAGTCTCAGATCCTAAGCCTCTGAT 2155
Query 2137 TTCTCGCTGGAGAAAGATCTG-CGGAAAACCTCTTAACTAGAGAGTTTGTACTTGTTGCA 2195
| ||||||||||||||| ||| || | ||||||||||||||||| |||||||| || |||
Sbjct 2156 T-CTCGCTGGAGAAAGACCTGTCG-ATAACCTCTTAACTAGAGAATTTGTACTCGTCGCA 2213
Query 2196 TCTGAATCGCAGCGGACTAACGAGCTAGCTGCCATGGTGATCAAGATACCAAAACTTACA 2255
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 TCTGAATCACAGCGGACTAACGAGCTAGCTGCCATGGTGATCAAGATACCAAAACTTACA 2273
Query 2256 GACACAA-C--AAGC-----TCA-A--C---------C-ACTCTTGGAGATTACTTTGCA 2294
||||||| | || | ||| | | | |||||||||||||||||||||
Sbjct 2274 GACACAAGCTCAACCAAAGATCAGAAACAGAATGAAACCACTCTTGGAGATTACTTTGCA 2333
Query 2295 GAGGTTAACGCAACAGTGGTACTTCCAAGTGGAGTTCACAGTCTCCCGCACAAAGGAGGG 2354
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2334 GACGTTAACGCAACAGTGGTACTTCCAAGTGGAATTCACAGTCTCCCGCACAAAGGAGGG 2393
Query 2355 CCGTCATCACTGATCCAACGATGGAAATCAGATGGATCATGTGACTGTGGAGGCTGGGAC 2414
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2394 CCGTCATCGCTGATCCAACGATGGAAATCAGGTGGATCATGTGACTGTGGAGGCTGGGAC 2453
Query 2415 ACGGGATGTAACCTTAGAATCCTCACAAATCAGCATAATAAACCCATAAACCCTTCTCCA 2474
| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2454 ATGGGCTGCAACCTTAGAATCCTCACAAATCAGCATAATAAACCCAGAAACCCTTCTCCT 2513
Query 2475 ACCACTTCAGATGCCTTCAAGCTTTTCTTTCAGGGAGGAGTACAGGAGAATAACAACCAA 2534
|||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 2514 TCCACTTCAGATGCCTTCAAGCTTTTCTTTCAGGGAGGATTACAGGATAACAACAACCAA 2573
Query 2535 CCATACTTGAGTTTCACTACATACAGAGAAGGTGTTTACGCGGTTGAGTACAATACATCG 2594
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2574 CCATACTTGAGTTTCACTACATACAGAGAAGGAGTTTACGCGGTTGAGTACAATACATCG 2633
Query 2595 CTCTCACTCTTGCAAGCATTCTCCATTTGTATAGCGGTTAACGAGGGACGAAATCCGTTA 2654
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2634 CTCTCACTCTTGCAAGCATTCTCCATTTGTATAGCTGTTAACGAGGGACGGAATCCGTTA 2693
Query 2655 ATAAAGACCACCGTGGAACCCAACACTTCACGTGTAGAGAAGAAAGCTTATGGAGGAGAG 2714
| | |||| || ||||||| |||| ||||||||||||||| ||||||| ||||||||||
Sbjct 2694 A-A--GACCGCCATGGAACCGAACAGTTCACGTGTAGAGAACAAAGCTTGTGGAGGAGAG 2750
Query 2715 ATGTCATCGATTCAAAACGAGAATTTGAAGTCATTTTCAGGTCCTATTGAAGCTGAGGCT 2774
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2751 ATGTCATCGATTCAAAACGAGAGGTTGAAGTCATTTTCAGGTCCTATTGAAGCCGAGGCT 2810
Query 2775 CCGGCTAGGTATCTCTCACACCACCCACCTTTGTCTCCTGTTGGGAGGGTTTAGTTGCTT 2834
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2811 CCGGCGAGGTATCTCTCACATCACCCACCTTTGTCTCCTGTTGGGAGGGTTTAGTTTCTT 2870
Query 2835 CTTCAAATAA-TCTTGT-TATATATAtttttt-tcttttcttttctcttctGATGGGGTT 2891
|||||||||| ||| | ||||||| |||||| | | | | || | |||| ||||||||
Sbjct 2871 CTTCAAATAAATCT-GCCTATATATGTTTTTTATATATA-TATT-T-TTCTAATGGGGTT 2926
Query 2892 CGTATTTTCTGTGTAATTACGGCGTGGAAGTAGATTACGTTAAATAGAGAAATTTGTGAA 2951
|||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 2927 CGTATTTTCTATGTAATTACGGTGTGGAAGTAGATTACGTTAAATAGA-AA-TTTGTGAA 2984
Query 2952 ACTTGTTGT-AATCGAATATCCAC 2974
|||||| || ||||||||||||||
Sbjct 2985 ACTTGT-GTTAATCGAATATCCAC 3007
Score = 1175 bits (636), Expect = 0.0
Identities = 791/864 (92%), Gaps = 18/864 (2%)
Strand=Plus/Plus
Query 58 ctctctacctctGTAGCTGATAGGGTCAGCTTCGTCGGCGCTATTTCTGCCGGATTTCAC 117
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 CTCTCTACTTCTGTAGCTGATAGGGTCAGCTTCGTCGGCGCTATTTCTGCCGGATTTCAC 78
Query 118 GGACGATTTGAGATCTGTTCTTCCTTCTTCTTTTTTCCTC-TCCTGATCTGATT-CAACT 175
||||||||||||||||||||||||||||| || || |||| ||||||||||||| || |
Sbjct 79 GGACGATTTGAGATCTGTTCTTCCTTCTTATTATT-CCTCCTCCTGATCTGATTTCA-CA 136
Query 176 CTAATCTGCTTCAGTCTCTGTGTT-ACGAACTGATTCCGTTC-AGTGaaaaaaaaTGTTG 233
||||||||||||| |||||||||| || ||||||||| | | ||| ||||||||||| |
Sbjct 137 CTAATCTGCTTCACTCTCTGTGTTTACTTACTGATTCCAT-CGAGT-AAAAAAAATGTGG 194
Query 234 AGCGTTTCAAGCTTCTGCAGTTTAATGGGA-GACTGAGGAGTCATTTGAGTGAAACGTTT 292
||| |||||||||| |||||| |||||||| | || ||||||||| ||||||||||||||
Sbjct 195 AGCATTTCAAGCTTTTGCAGTATAATGGGAAG-CTAAGGAGTCATCTGAGTGAAACGTTT 253
Query 293 GGAACTTTGGA-AACAGATGGAGTGTCGTTTGGAGTTGAAGAAAGGTTCTTGTGATAGAC 351
| ||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 254 GAAACTT-GTATAACAGATGGAGTGTCGTTTGGAGTTGAAGAAGGGTTCTTGTGATAGAC 312
Query 352 CACCATTTGTAGCTGCTGAGAAGAAGGTATTAACTAAGGAAAGCTCAAAGGCATTTACAC 411
|||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||
Sbjct 313 CACCTTTTGTGGCTGCTGAGAAGAAAGTATTGACTAAGGAAAGCTCAAAGTCATTTACAC 372
Query 412 CGGATAAGTTTAGAGACGATAAACGCGGGTTATCTTACTCCGATTTCCACCGCGAGATCA 471
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 373 CGGATAAGTTTAGAGATGATAAACGCGGGTTGTCTTACTCCGATTTCCACCGCGAGATCA 432
Query 472 CGAAAAAAGTTGAAGATGTATGTCCTAAACGCTTGGAGAATCGTTTGAAGTCAAGGATAG 531
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 433 CGAAGAAAGTTGAAGATGTATGTCCCAAACGGTTGGAGAATCGTTTGAAGTCACGGATAG 492
Query 532 GTAGAACTGCTTCAGGAGAAAGAGATCTTGTGAAGTACAAGTCTTATGTGCCGAGTTATA 591
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 493 GTAGAACTGCGTCTGGAGAAAGAGATCTTGTGAAGTACAAGTCTTATGTTCCGAGTTATA 552
Query 592 TAAAGAAATGTGATAAAGTTGAAGACAAGAGTGTTAAAGCTGGTGGTGTTATTGGTTCAC 651
||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 553 TAAAGAAATGTGATAAAGTTGAAGAGAAGAGTGTTAAAGCTGGTGGCATTGTTGGTTCAC 612
Query 652 AGGAGCTAAGGAATA-T-G-CAAGGGATTGATAAACTGATGGATAAGCATACGAGGTCTT 708
||||||||||||||| | | |||| || ||||||||||||||||||||||||||||||||
Sbjct 613 AGGAGCTAAGGAATAATAGGCAAGCGAGTGATAAACTGATGGATAAGCATACGAGGTCTT 672
Query 709 CCTTGTCTAATACAAGTACATCGTCTTCTCTCTGGACTGATGAGTCATCGACTGATTCCA 768
| |||||||| ||||| ||||||||||| || ||||||||||| || || |||||||| |
Sbjct 673 CGTTGTCTAACACAAGCACATCGTCTTCACTTTGGACTGATGAATCGTCTACTGATTCTA 732
Query 769 GTAGAGGTCTTTGTGCTTCTCCTTTTCGTAAAAAGATCAATCACCCTCCTTTGCAGTATT 828
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 733 GTAGAGGTCTTTGTGCTTCTCCATTTCGTAAAAAGATCAATCATCCTCCATTGCAGTATT 792
Query 829 ATCTCATGTCTTCTAAGCCTGGAGATAATTTTCAAGATTTGGAGCCACCTCAAGATAACG 888
|||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 793 ATCTGATGTCATCTAAGCCTGGAGATAATTTTCAAGATTTGGAGCCGCCTCGAGATAACG 852
Query 889 GTGATA---CTTCTCACAGTCATA 909
|||||| |||| || |||||||
Sbjct 853 GTGATAGTACTTCCCAAAGTCATA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113585110590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5