BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29590.1 Length=648 Score E Sequences producing significant alignments: (Bits) Value Ahg481873 jgi|Araly1|481873|fgenesh2_kg.4__933__AT2G29590.1 813 0.0 > Ahg481873 jgi|Araly1|481873|fgenesh2_kg.4__933__AT2G29590.1 Length=599 Score = 813 bits (440), Expect = 0.0 Identities = 521/560 (93%), Gaps = 5/560 (1%) Strand=Plus/Plus Query 82 TGAGGCACCGCGAGTTGAAGAATTTTTAGGTG-AAGGGAAAAGCTTCTACGAGAATTTTA 140 ||||||||||||||| ||||| || ||||| | |||| ||||||||||| ||| | |||| Sbjct 43 TGAGGCACCGCGAGTGGAAGAGTTCTTAGG-GAAAGGAAAAAGCTTCTATGAGGACTTTA 101 Query 141 GTCTCAGAGGAATCCGAGTCAACCGAGTCGAACCGGGTTTCATTTCCTGCTCTTTCAAGG 200 | |||||||||||||||||||||||||||||||| | ||||||||| |||| |||||||| Sbjct 102 GCCTCAGAGGAATCCGAGTCAACCGAGTCGAACCTGATTTCATTTCTTGCTATTTCAAGG 161 Query 201 TTCCTCTTCGTTTGACGGACAGAGACAAGAATTTAGCAAATGGTGCGATTGCAAATCTTG 260 | ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 162 TCCCTCTTCGTTTGACGGACAGAGATGGGAATCTAGCAAATGGTGCGATTGCAAATCTTG 221 Query 261 TGGATGAAGTTGGTGGAGCACTTGTACATGGCGAAGGCTTACCTATGAGTGTTTCAGTGG 320 |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 222 TGGATGAAGTTGGTGGAGCACTTGTACATGTTGAAGGTTTACCTATGAGTGTTTCAGTGG 281 Query 321 ACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGA 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 ACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGA 341 Query 381 GATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTAGTCAGAAACAAGATGA 440 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 342 GATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTTGTGAGAAACAAGATGA 401 Query 441 CCGGGGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCT 500 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 CCGGAGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCT 461 Query 501 GAGTCCAACTTTTAAGTCTTGT-ATCACTGTAATGTCTGTTTTCAATAATAAGATTATGG 559 ||| ||||||||||||| || | |||||||| |||| |||||||| ||||| |||||||| Sbjct 462 GAGCCCAACTTTTAAGTGTT-TCATCACTGTTATGTTTGTTTTCAGTAATAGGATTATGG 520 Query 560 TTAGGTAAATTTGGTTAGGTCCTTTGTTCTTTCTGGTTGTGAATCTAAAACCTTGGTACA 619 | |||||||||||||||| | ||||||||||| |||||||||||||||||||| ||||| Sbjct 521 T-AGGTAAATTTGGTTAGTTAGTTTGTTCTTTCAGGTTGTGAATCTAAAACCTTTGTACA 579 Query 620 TAGCTTATAAAGATCAAACC 639 |||||||||||||||||||| Sbjct 580 TAGCTTATAAAGATCAAACC 599 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23750577291 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5