BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29620.1 Length=2577 Score E Sequences producing significant alignments: (Bits) Value Ahg344726 jgi|Araly1|344726|fgenesh1_pg.C_scaffold_4001068 2333 0.0 Ahg470753 jgi|Araly1|470753|fgenesh2_kg.1__707__AT1G07330.1 154 3e-36 > Ahg344726 jgi|Araly1|344726|fgenesh1_pg.C_scaffold_4001068 Length=2217 Score = 2333 bits (1263), Expect = 0.0 Identities = 1543/1675 (92%), Gaps = 32/1675 (2%) Strand=Plus/Plus Query 1 ATGGGAAAATTTGATGCTAAAGATGTTTGCTTTATCGTTTGGAAAATTCTTAGATTCTCA 60 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 ATGGGAAAAATTGATGCTAAAGATGTTTGCTTTATGGTTTGGAAAATTCTTAGATTCTCA 60 Query 61 ACGAAAACAATTTTCAGATACGTGAAG-AGATACCCAATTGTTTCTGGTGTTTCTACGTT 119 ||||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 61 ACGAATACAATTTTCAGATACGT-TAGAAGATACCCAATTGTTTCTGGTGTTTCTATGTT 119 Query 120 TTTGATCATCTTGTACACTTTTCTTCCTTGGGTTTTCTATTTTTTGCTCTGTTCTTCTCC 179 ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 120 TTTGATCGTCTTGTATACTTTTCTTCCTTGGGTTTTCTATTTCTTGCTCTGTTCTTCTCC 179 Query 180 TTTGATAGCTTTTGCTTCGTTTTATATACGGAATCATGATCTGAGTTCGAAGATTTGTGA 239 ||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||| Sbjct 180 GTTGATAGCTTTTGGTTCGTTTTATATACGGAATCATCATCTGAGTACGAAGATCGGTGA 239 Query 240 TGAAGACAAGAGAAAGGATCGTGGGTTAT-CTACGATTTCTCAAGAGGGAAGAACAGAGA 298 ||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||||| Sbjct 240 TGAGGACAAGAGAACGGATCGTGGGTTATCCT-CGATTTCTCAAGAGGGAAGAACAGAGA 298 Query 299 AGGCTAAGTTAAAGCATCAACAAAGTGTTAGACGAAATGCAAGAAGGAAAGTTGAAGAGG 358 |||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||| Sbjct 299 AGGCTAAGTTAAAGCACCAACAAAGTGTTCGACGAAATGCTAGAAGAAAAGTTGAAGAGG 358 Query 359 TTGGGAAAGATTGGGATTCGTCTCAAGCTAGTGAGGATGAGAGAGGTAAGGTTATTCTGA 418 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 359 TTGGGAAAGATTGGGATTCTTCTCAGGCTAGTGAGGATGAGAGAGGTAAGGTTATTTTGA 418 Query 419 CTACTCTCTATGGAGAAGTATTACCGGAGACGATTACACCAGATATGGAGAAATTCAAGA 478 ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| Sbjct 419 CTACTCTCTATGGGGAAGTATTACCGGAGACGATTAGTTCAGATATGGAGAAATTTAAGA 478 Query 479 GAGAAAGGACGTTGCTTGTTGCAGAAGAAAACGT-ATTTGACTCTGTTCTTGACAATCAC 537 |||| ||||||||||||||||| |||| |||| | ||| |||||||| ||| | | Sbjct 479 GAGAGAGGACGTTGCTTGTTGCGGAAG-AAACCTCCTTTAACTCTGTTGTTG--AGT--- 532 Query 538 AGAGATCTTGTTGAATTAGAGAGGCTAATAAGTGTTGATGGTGATGATGAAAGTGAAGTT 597 ||| || ||| |||||| |||||||||||||| | | ||||||||||||| || Sbjct 533 -TAGA-----TT-CATTGGAGAGGTTAATAAGTGTTGAT-G-G-TGATGAAAGTGAAATT 582 Query 598 GAATGTtcatcatcatcatcatcGGAAGGAGAAAAGGAAGAAGAAGAAAGGCGTGAAGAT 657 ||||||||||||| ||||||| |||| ||||| |||||||||||||||||| |||||| Sbjct 583 GAATGTTCATCATTATCATCAGAAGAAGAAGAAAGGGAAGAAGAAGAAAGGCGCGAAGAT 642 Query 658 GTAAGCAAGGTTGTAGTGGCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGG 717 || ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 643 ATAGGCAAGATCGTAGTACCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGG 702 Query 718 ACATCTGAGATCGAACGAAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAGGTCAAGG 777 ||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||| Sbjct 703 ACATCTGAGATTGAAAGGAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAGATCAAGG 762 Query 778 AGATTTTTCTTACTTGCAGCTGAAGGAAGCTTGATGGATGATATGGAAGTTCCTCGGATT 837 ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 763 AGATTTTTCTTACTTGCTGCTGAAGGAAGCTTGAT-G--GATATGGAAGTTCCTCGGATT 819 Query 838 TGTATTGGTCGAAACTTTTATGGTTTCGATAAAGGAAACTACGAAATCGATGGACTTGTC 897 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 820 TGTATTGGTCGAAACTTTTATGATTTCGATAAAGGAAACTACGAAATCGATGGACTTCTC 879 Query 898 ATGCCAGGCTCTGCACCTTCCGTTTTATTACCAAGAAGAAACCCATTTGACCTTCCTTAC 957 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 880 ATGCCAAGCTCTGCACCTTCTGTTTTATTACCAAGAAGAAACCCATTTGACCTTCCTTAC 939 Query 958 GATCCGT-TGGAAGAGAAACCAAACCTAACAGGAGATAGTTTTCAACAAGAGTTTGCTGA 1016 ||||| | ||||||||||||| ||| | ||||||||||||||||| |||||||||||||| Sbjct 940 GATCC-TCTGGAAGAGAAACCGAACTTGACAGGAGATAGTTTTCAGCAAGAGTTTGCTGA 998 Query 1017 GACTAACCCTAAAGATATCTTCTTTTGCCGCCATGAGAGCTTCCATCACA-GAGCTTTTC 1075 |||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 999 GACTAACCGGAAAGATATCTTCTTTTGCCGCCATGAGAGCTTCCATCACAGGA-TTTTTC 1057 Query 1076 CATCAGAATCTCAAAATGATTCTAAATTTACGTCTTTGTGGAGAAATGTAGTTGATGGTA 1135 |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| Sbjct 1058 CATCAGAATCTCAAAAAGATTCTAAATTGACGTCTTTGTGGAGAAATACAGTTGATGGTA 1117 Query 1136 GGCCTAGGCCACTACAAGGTAGCAATAATCAGGAACCTCTAATGAAAGAGAGA-GAGAAA 1194 |||||| ||||||||||||||||||| |||| | ||||||||||||||| ||| || ||| Sbjct 1118 GGCCTAAGCCACTACAAGGTAGCAATGATCAAGCACCTCTAATGAAAGAAAGAGGA-AAA 1176 Query 1195 GGAAATGATATGGAGGCAGGAGAGGTACGGATAGAGACAGATTCCATCAGAAACGATGAT 1254 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1177 GGAAATGATATGGAGGCAGGGGAGGTACGGATAGAGACGGATTCCATCAGAAACGATGAT 1236 Query 1255 AGTGACTCGAACGCATCGCTTTCTCCACGAGAAAGAGAGAAGGATTTCAATGTCTCAG-A 1313 |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| | | Sbjct 1237 AGTGACTCGAACGCATCGCTTTCTCCACGAGAAAGAGACAAAGATTTCAATGCCTC-GTA 1295 Query 1314 CCAATCAGATGCTTCTGGAACTTTCTGCAAACGAAATGATCGTGTTGGAAACTCTGTTGC 1373 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1296 CCAATCAGATGCTTCCGGAACTTTCTGCAAACGAAATGATCGTCTTGGAAACTCTGTTGC 1355 Query 1374 GGGTTTAGTGCCTAGAAGCAGTGGTTCGAGTTCACTAGCAACCGCGAGGCAAAGATACAT 1433 |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1356 GGGTTTAGTGCCTAGAAGCAGTGGTTCGAGTTCACTAGCAACTGAAAGGCAAAGATACAT 1415 Query 1434 GGAGCATTTTGGTTACAATACAAGAAAATGTCATATGGTGACACATTCTGTTGACTCTGA 1493 ||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||| Sbjct 1416 GGAGCATTTTGGTTACAGTACAAGAAAGTCTCATATGGTTACACATTCTGTTGACTCTGA 1475 Query 1494 TCTTCAAGTTGAGGTTTCTGAACTTGGATCACCTCCAACTTCAGTTGATGGTAATGACTC 1553 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1476 TCTTCAAGTTGAGGTTTCTGAACTTGGATCACCTCCCACTTCAGTTGATGGGAATGACTC 1535 Query 1554 TGATTATGAAAGATCTCTGTTTGTTTATGAATCGGAGATGGGAAAAGAAATGGGTTATAA 1613 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1536 TGATTATGAGAGATCTCTGTTTGTTTATGAATCGGAGATCGGAAAAGAAATGGGTTTTAA 1595 Query 1614 TGGTGTGGAATCTGAAGTCTTACTTGTGGGGAAAGATGATCAAGATCAAAATGAA 1668 ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1596 TGGTGGGGAATCTGAAGTCTTACTTGTGGGGAAAGATTATCAAGATCTAAATGAA 1650 Score = 490 bits (265), Expect = 2e-137 Identities = 327/354 (92%), Gaps = 15/354 (4%) Strand=Plus/Plus Query 1756 GATGAGGAGTTGAAGGAACTTTCC-GAGAACTCAGCTGATGAGATAAAGATAAGTTATGA 1814 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 1687 GATGAGGAGTTGAAGGAAC-TTCCTGAGAACTCAGCTGATGAGATAAAGATAAGTTATGA 1745 Query 1815 CTCTG---ACGAACATGAACCATCCGAGAGGACGACTGATCAAGAATTTGAAGAACCTTA 1871 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1746 CTCTGTCGACGAACATGAACCATCCGAGAGGAC---TGATCAAGAATCTGAAGAACCTTA 1802 Query 1872 TGAGAGAAATGATGGAGAAGAAAGGCAACAACTCGTGGAAGCTGAAGCTTCTGATGTAAA 1931 |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| || Sbjct 1803 TGAGAGAAATGATGGAGAGGAAATGCAACAACTCGCGGAAGCTGAAGCTTCTGATGTTAA 1862 Query 1932 TCATCATGGAAACTCTGAAGAATCTGTTACTTCTCCAAGATCAGTGTTACCAGACATG-T 1990 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1863 TCATCATGGAAACTCTGAAGAGTCTGTTACTTCTCCAAGATCAGTGTTACCAGACATGAT 1922 Query 1991 -T-ACATCTAGACCAGACTGC-TTGGGAGGTTCTGGATCATGCATCTA-ATGGTCAGCTG 2046 | |||||||||||||||| | || ||||||||||||||| |||| | ||||||||||| Sbjct 1923 GTTACATCTAGACCAGACT-CATTCTGAGGTTCTGGATCATACATC-AGATGGTCAGCTG 1980 Query 2047 CAAAATGTGGATCCACCAGCTGAATCATCTCATTATCAATTAGATGGACGTATT 2100 |||||||||| |||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1981 CAAAATGTGGTTCCACCTGCTGAATCATCTCATTATCAATTAGATGAACGTATT 2034 Score = 215 bits (116), Expect = 1e-54 Identities = 135/144 (94%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 2102 ATGCCACAGGAACAATTCAGGAGAATCAAGAGGGATTTGAAGTAACATTCAATGATGAGT 2161 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2075 ATGCCACAGGAACATTTCAGGAGAATCAAGAGGGCTTTGAAGTAACATTCAATGATGAGT 2134 Query 2162 CTAATTCTGCAGAAGACCACAGACAGTCCATCGATCCATTGGCTGTAGAACTTGA-GAAC 2220 |||||||||| |||||||| |||||||||||| |||||||||||||||||||| | || | Sbjct 2135 CTAATTCTGCTGAAGACCATAGACAGTCCATCAATCCATTGGCTGTAGAACTTAAAGA-C 2193 Query 2221 AATCAAACCGATGGAATCAATTGA 2244 ||| |||||||||||||||||||| Sbjct 2194 AATGAAACCGATGGAATCAATTGA 2217 > Ahg470753 jgi|Araly1|470753|fgenesh2_kg.1__707__AT1G07330.1 Length=2055 Score = 154 bits (83), Expect = 3e-36 Identities = 129/151 (85%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 287 GAAG-AAC-AGAGAAGGCTAAGTTAAAGCATCAACAAAGTGTTAGACGAAATGCAAGAAG 344 |||| ||| ||| |||||| | |||||||| |||| ||||||| |||||||||| ||||| Sbjct 91 GAAGAAACAAGA-AAGGCTGACTTAAAGCACCAACGAAGTGTTCGACGAAATGCCAGAAG 149 Query 345 GAAAGTTGAAGAGGTTGGGAAAGATTGGGATTCGTCTCAAGCTAGTGAGGATGAGAGAGG 404 |||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||| Sbjct 150 GAAAGTTGAAGAGGTTGGGAAAGATTGGGACTCTTCTCAGGCTAGCGAGGATGAGAGAGA 209 Query 405 TAAGGTTATTCTGACTACTCTCTATGGAGAA 435 || || ||| | || ||||| ||||| ||| Sbjct 210 CAAAGTCATTTTAACAACTCTATATGGCGAA 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97168214995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5