BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29650.1
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481880 jgi|Araly1|481880|fgenesh2_kg.4__940__AT2G29650.1 3051 0.0
Ahg925426 jgi|Araly1|925426|scaffold_200987.1 418 8e-116
> Ahg481880 jgi|Araly1|481880|fgenesh2_kg.4__940__AT2G29650.1
Length=1881
Score = 3051 bits (1652), Expect = 0.0
Identities = 1806/1882 (96%), Gaps = 4/1882 (0%)
Strand=Plus/Plus
Query 9 aaaaaacagagaagaagaagaaaaaaTCTATCTCCGCCATGAACGCGAGAGCTCTTCTTT 68
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AAAAAACAGAGAAGAAGAAGAAAAAATCTATATCCGCCATGAACGCGAGAGCTCTTCTTT 60
Query 69 GCTCTTCAAATATTCACTCTCTCTACACTTCAAATCGTCCACCTGAAAAAACCTCTTCTT 128
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GCTCTCCAAATCTTCACTCTCTCTACACTTCAAATCGTCCACCTGAAAAACCCTCTTCTT 120
Query 129 CTCGCAGCCTCCGTAATCTCAAACCATCTCCAAAGTCGTTACGGGTATGGATCTACCCGC 188
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 121 CTCGCAGCCTCCGGAATCTCAAACCAGCTCCAAATTCGTTACGGGTATGGATCTACCCGC 180
Query 189 GAAATAGGTCCAGTGTTTTCCGGGTATTAGTTCGGAGCTCCGACAAGAGTGAAAGCAGTA 248
||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 181 GAAATAGGTCCGGCGTTTTCCGGGTATTAGTTCGGAGCTCCGACAAAAGAGAAAGCAGTA 240
Query 249 ATTCGTATTACGTAGAAGGAGATAAAGTAAGTGGAAACAATGACGTCGTTTCTGATTCGC 308
|||||||||||||||| ||||| | ||||| | ||||||| |||||||||||||||||||
Sbjct 241 ATTCGTATTACGTAGATGGAGAGAGAGTAAATAGAAACAACGACGTCGTTTCTGATTCGC 300
Query 309 CTAGCTCTATCGTCCTCCCATGGTGGGAAGAGTTTCCGAAGCGGTGGGTGATTGTG-TTA 367
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 CTAGCTCGATCGTCGTCCCATGGTGGGAAGAGTTTCCGAAGCGGTGGGTGATTGTGCTT- 359
Query 368 CTCTGTTTCTCAGCTTTTCTTCTCTGCAATATGGACAGAGTGAATATGAGTATAGCTATA 427
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 360 CTCTGTTTCTCAGCTTTTCTTCTATGCAATATGGACAGAGTGAATATGAGTATAGCAATA 419
Query 428 CTTCCGATGTCAGCTGAGTATGGTTGGAATCCAGCAACAGTTGGTCTGATTCAGTCTTCT 487
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 420 CTTCCGATGTCGGCTGAGTATGGTTGGAATCCAGCAACAGTTGGTCTGATTCAATCTTCT 479
Query 488 TTCTTCTGGGGTTACCTTCTTACACAGATAGCTGGTGGAATTTGGGCAGACACTGTAGGA 547
||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 480 TTCTTTTGGGGTTACCTTCTTACACAGATAGCTGGTGGGATATGGGCAGACACTGTAGGT 539
Query 548 GGGAAAAGGGTTCTTGGATTCGGTGTTATTTGGTGGTCAATCGCTACAATTCTCACTCCT 607
||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 540 GGGAAAAGGGTTCTTGGATTCGGTGTTATCTGGTGGTCAATCGCCACGATTCTCACTCCG 599
Query 608 GTAGCTGCTAAACTCGGTCTTCCTTACTTGCTCGTTGTTCGTGCTTTCATGGGAGTTGGA 667
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GTAGCTGCTAAACTCGGTCTTCCGTACTTGCTCGTTGTTCGTGCTTTCATGGGAGTTGGA 659
Query 668 GAGGGTGTTGCAATGCCTGCTATGAATAATATATTGTCGAAGTGGGTTCCTGTGCAAGAG 727
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 660 GAGGGTGTTGCAATGCCTGCTATGAATAATATATTGTCGAAGTGGGTGCCCGTGCAAGAG 719
Query 728 AGAAGCAGATCACTCGCGCTTGTTTACAGCGGAATGTACCTTGGATCTGTCACCGGTTTA 787
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 AGAAGCAGATCACTCGCGCTTGTTTACAGCGGAATGTACCTTGGATCCGTCACCGGTTTA 779
Query 788 GCCTTTTCGCCTTTCTTGATTCATCAATTTGGATGGCCTTCTGTGTTTTATTCTTTCGGG 847
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 780 GCCTTTTCGCCTTTCTTGATTCATCAATTTGGATGGCCCTCTGTGTTTTACTCTTTTGGG 839
Query 848 TCTCTTGGAACTGTATGGTTGACTCTGTGGCTAACTAAGGCAGAGAGTTCACCATTAGAA 907
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 TCTCTTGGAACTGTATGGTTGACTCTGTGGCTGACTAAGGCAGAGAGTTCACCATTAGAA 899
Query 908 GATCCAACATTGCTCCCTGAAGAAAGAAAGCTAATTGCAGACAACTGTGCTAGCAAAGAG 967
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 GATCCAACATTGCTCCCTGAAGAAAGAAAGCTAATTGCAGACAACTGTGCCAGCAAAGAG 959
Query 968 CCAGTGAAGTCGATCCCGTGGAGGCTGATATTGTCGAAACCACCGGTTTGGGCTCTCATC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CCAGTGAAGTCGATCCCGTGGAGGCTGATATTGTCGAAACCACCGGTTTGGGCTCTCATC 1019
Query 1028 AGTTGCCACTTTTGTCACAACTGGGGAACATTCATTCTCTTAACATGGATGCCAACTTAT 1087
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1020 AGTTGCCACTTTTGTCACAACTGGGGAACATTCATTCTCTTAACCTGGATGCCAACTTAT 1079
Query 1088 TACCATCAAGTGCTGAAGTTCAACCTTATGGAGTCAGGACTTCTCTCTGTATTTCCATGG 1147
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1080 TACCATCAAGTGCTGAAGTTCAACCTAATGGAATCAGGGCTTCTCTCTGTATTTCCATGG 1139
Query 1148 ATGACAATGGCAATATCTGCAAATGCCGGTGGATGGATTGCCGATACACTTGTCAGCCGA 1207
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 ATGACAATGGCGATATCTGCAAATGCTGGTGGATGGATTGCCGATACACTTGTCAGCCGA 1199
Query 1208 GGTTTCTCTGTCACGAATGTCCGCAAGATAATGCAAACAATAGGGTTTCTTGGACCAGCG 1267
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 GGTTTCTCTGTCACGAATGTCCGCAAGATAATGCAAACAATTGGGTTTCTTGGACCAGCG 1259
Query 1268 TTCTTCCTAACACAGCTGAAACACATAGATTCTCCTACAATGGCTGTTTTGTGCATGGCT 1327
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1260 TTCTTCCTAACACAGCTGAAACACATAGATTCTCCAACAATGGCTGTTTTGTGCATGGCT 1319
Query 1328 TGTAGTCAGGGGACTGATGCGTTTTCACAGTCTGGTCTATACTCTAACCATCAAGACATC 1387
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 TGTAGCCAGGGTACTGATGCGTTTTCACAGTCTGGTCTATACTCTAACCATCAAGATATT 1379
Query 1388 GCTCCAAGATACTCTGGAGTGTTACTTGGTTTGTCTAATACTGCTGGAGTACTTGCCGGA 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCTCCAAGATACTCTGGAGTGTTACTTGGTTTGTCTAATACTGCTGGAGTACTTGCCGGA 1439
Query 1448 GTTCTTGGCACAGCTGCGACTGGTCACATACTACAACACGGTTCTTGGGATGACGTTTTC 1507
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTTCTTGGCACAGCTGCCACTGGTCACATACTACAACACGGTTCTTGGGATGACGTTTTC 1499
Query 1508 ACGATTTCGGTCGGTCTTTACCTCGTTGGGACCGTCATTTGGAACCTATTTTCAACCGGA 1567
|| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1500 ACAATTTCGGTCGGTCTTTACCTTGTTGGGACCGTCGTTTGGAACCTATTTTCAACTGGA 1559
Query 1568 GAGAAGATAATCGATTGATCCATTCCGAGAATAGTAAATAGTTCGGCTCCAAGACCTCTC 1627
||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1560 GAGAAGATAATCGATTGATCCATTCCGAGAATAGTGAATAGTTCAGCTCGAAGACCTCTC 1619
Query 1628 ATCAGGTGCAACTTCACCTCACGCCAGTCTCTGATTATACAAGTATCATTGCAGTCTGAG 1687
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1620 ATCAGGTGAAACTTCACCTCACGCCAGACTCTGATTATACACGTATCATTGCAGTCTGAG 1679
Query 1688 AGCTAGCCGGAATATTCCTTTTTTGCCAGAAAATTCTTCAGGATCTTTCTGCTCGTTGAT 1747
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AGCTTGCCGGAATATTCCTTTTTTGCCAGAAAATTCTTCAGGATCTTTCTGCTCGTTGAT 1739
Query 1748 TTAGGCCAAACGCATATGAATAATACTTTGTAGATGAAAGATATACA--GATGATTTTTT 1805
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1740 TTAGGCCAAACTCATATGAATAATACTTTGTAGATGAAAGATATACACAGATGATTTTTT 1799
Query 1806 GTAAATAAACAAAGCTCACACTTTCTCAAGATTACTCAAAATCTCTCTTCAGCTCTATAT 1865
||| |||| ||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1800 GTACATAATCAAAGCTCACACTTTCTCACGATTACTCAAAATCACTATTCAGCTCTATAT 1859
Query 1866 ATATTTGTATCATAAAGATATT 1887
|||||| ||||||| |||||||
Sbjct 1860 ATATTTATATCATATAGATATT 1881
> Ahg925426 jgi|Araly1|925426|scaffold_200987.1
Length=353
Score = 418 bits (226), Expect = 8e-116
Identities = 259/275 (94%), Gaps = 2/275 (1%)
Strand=Plus/Plus
Query 514 GATAGCTGGTGGAATTTGGGCAGACACTGTAGGAGGG-AAAAGGGTTCTTGGATTCGGTG 572
||||||| ||||||| |||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 35 GATAGCTAGTGGAATATGGGCAAACACTGTAGG-GGGCAAAAGGGTTCTTGGATTCGGTG 93
Query 573 TTATTTGGTGGTCAATCGCTACAATTCTCACTCCTGTAGCTGCTAAACTCGGTCTTCCTT 632
|||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 94 TTATCTGGTGGTCAATCGCCACAATTCTCACTCCTGTAGATGCTAAACTCGGTCTTCCAT 153
Query 633 ACTTGCTCGTTGTTCGTGCTTTCATGGGAGTTGGAGAGGGTGTTGCAATGCCTGCTATGA 692
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 154 ACTTGCTTGTTGTTCGTGCTTTCATGGGAGTTGGAGAGGGTGTTGCAATGCCTTCTATGA 213
Query 693 ATAATATATTGTCGAAGTGGGTTCCTGTGCAAGAGAGAAGCAGATCACTCGCGCTTGTTT 752
| ||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||
Sbjct 214 ACAATATATTGTCGAAGAGGGTGCATGTGCAAGAGAGAAGCAGATCACTCACGCTTGTTT 273
Query 753 ACAGCGGAATGTACCTTGGATCTGTCACCGGTTTA 787
|||||||||||||||||||||||||||||||||||
Sbjct 274 ACAGCGGAATGTACCTTGGATCTGTCACCGGTTTA 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70885945945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5