BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29670.1
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481882 jgi|Araly1|481882|fgenesh2_kg.4__942__AT2G29670.1 1851 0.0
Ahg470745 jgi|Araly1|470745|fgenesh2_kg.1__699__AT1G07280.1 291 2e-77
> Ahg481882 jgi|Araly1|481882|fgenesh2_kg.4__942__AT2G29670.1
Length=2150
Score = 1851 bits (1002), Expect = 0.0
Identities = 1281/1409 (91%), Gaps = 45/1409 (3%)
Strand=Plus/Plus
Query 587 AATTCAATCGAGCCGCCATGGAACGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 646
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 636 AATTCAATCGAGCCACCATGGCATGAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 695
Query 647 AACAGTGTTGATCTTCCTCTTTCACTTCGTATTATAAAGAAGAAACGTCAATGGGAAGAA 706
|||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 696 AACAGTGTTGATCTTCCTCTTTCAATTCGGATCATAAAGAAGAAACGACAATGGGAAGAA 755
Query 707 GGAGTTAAACAAGCTGGTGAATCTGCGTGTTGCTCGATGAATAAAGCTTTTTCTTCAATG 766
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 756 GGAGTTAAACAAGCCGGTGAATCAGCGTGTTGCTCGATGAATAAAGCTTTTTCGTCAATG 815
Query 767 GTGTTTATGATACGGGAGCTTCAGAGCTTTACTTTACATATGAGAGAGATTCTGTTCTAC 826
||||||||||| || |||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 816 GTGTTTATGATTCGAGAGCTTCAGAGCTTTACTCTGCATATGAGAGAGATTCTGTTTTAC 875
Query 827 GAAGACTTGCAAGAGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGG 886
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 GAAGATTTGCAAGGGATTTTGCTAAGAGTTAGAGAAGAGATGCAACAATCTTTCGTTTGG 935
Query 887 TTGTTTCAACAAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATTCTCTTA 946
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 936 TTGTTTCAACGAGTTTTCTCTGCTACTCCTACGTTGATGGTTTATGTTATGATACTCTTA 995
Query 947 GCCAATTTCACTGTTTATTCTATCGGTAACAACAGCTCCGCTTTAGCCGCTGTTGCTCCT 1006
||||||||||| |||||||| || |||| ||||| ||||||||||| | | ||||||
Sbjct 996 GCCAATTTCACGGTTTATTCGATTGGTAGCAACAACTCCGCTTTAG-C-C----GCTCCT 1049
Query 1007 CTTCCTCCGACGATTACGGAGTTAACAACTGTTAGTGAAACAGAGGAAACAAACGTGAAG 1066
||||||||||||||||| |||||||| || ||||||||| || ||||| |||||||||
Sbjct 1050 CTTCCTCCGACGATTACAGAGTTAACGAC---TAGTGAAACTGATGAAACGAACGTGAAG 1106
Query 1067 TTTGATTCCTCGGTGGTGAAAACGTTCTTTGTATCATCTCCTAGTGGGAGTATAGCTTCA 1126
|||||||||||| |||||||||||||||||||||| ||| |||||||||||| | |||||
Sbjct 1107 TTTGATTCCTCGATGGTGAAAACGTTCTTTGTATCGTCTTCTAGTGGGAGTACAACTTCA 1166
Query 1127 GTTGGTGGTAACAACAATGGCGGCGGTGGAAAC-GTCAAG-CCGGTGTTAAGCGGAACTG 1184
||||||||||||||||||||||||||||||||| || | ||||| ||||| ||||| |
Sbjct 1167 GTTGGTGGTAACAACAATGGCGGCGGTGGAAACATTC--GTCCGGTTTTAAGTGGAACAG 1224
Query 1185 ACGGTGATGGATCCGATGGATCAGAACAGTTCAGAACAATCATACCCGAAGGAGTTTCTC 1244
| |||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 1225 ATGGTGATGGATTCGATGGATCAGAACAGTTTAGAACAGTAATACCCGAAGGAGTTTCTC 1284
Query 1245 AATTGTCATCATCGA-ATT----T---CG------G-GTCAGAGCCGTCAGTATCGGGAC 1289
|||||||||| |||| || | || | |||||||||||||||||||||||
Sbjct 1285 AATTGTCATCGTCGACTTTCGGGTCAACGACTACAGAGTCAGAGCCGTCAGTATCGGGAC 1344
Query 1290 AAGATGAACATAGATTGTGGAATTCGATGGTGGAGGAAGCAGAACGAATGCAGTATTCAA 1349
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1345 AAGATGAACATAGACTGTGGAATTCAATGGTGGAGGAAGCAGAACGAATGCAGTATTCAA 1404
Query 1350 ATATTGACGATTCGTTGGATCAGGAGACGAGGAAGCGGTTCGTGTCTCATGTAGAGGCTC 1409
||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| || ||||
Sbjct 1405 ATATTGATGGCTCGTTGGATCAAGAGACTAGGAAGCGGTTTGTGTCTCATGTGGAAGCTC 1464
Query 1410 GAGTAGAAGCAGAGGAAGACACTGGTTACTTCAAAACAGAGCTAATGTATCAAACAGAAC 1469
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||
Sbjct 1465 GAGTAGAAGCAGAGGAAGACACGGGTTACTTCAAAACAGAGCTTATGTACCAAACAGGAC 1524
Query 1470 TGTCTCAAGAGCCTAATAATCCTCTAC-TACTCGCTAACTATGCTCAGTTCCTTTACCTC 1528
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1525 TGTCTCAAGAGCCTAATAATCCTCT-CTTGCTCGCTAACTATGCTCAGTTCCTTTACCTC 1583
Query 1529 GTCTCTAATGACCATGACAGAGCGGAAGAGTATTTCAAGAGAGCGGTAGGAGTGGAACCG 1588
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1584 GTCTCTAATGACCATGACAGAGCGGAAGAGTACTTCAAAAGAGCGGTAGGAGTGGAACCA 1643
Query 1589 AAAGATGCAGAGGCGTTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTT 1648
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 AAAGACGCAGAGGCGCTTAGCAAATATGCGACGTTCTTATGGAGAGCACGGGACGATCTT 1703
Query 1649 TGGGCGGCTGAGGAGACTTTCTTAGAAGCAATTGATGCCGATCCGACCAACTCTTACTAC 1708
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 1704 TGGGCGGCTGAGGAGACTTTCTTGGAAGCAATCGATGCTGATCCGACCAACTCTTACTAT 1763
Query 1709 GCCGCTAATTACGCCAATTTCTTGTGGAATACCGGCGGTGATGACACGTGTTTCCCTCTT 1768
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1764 GCTGCTAATTACGCCAATTTCTTGTGGAATACTGGCGGTGACGACACGTGTTTCCCTCTT 1823
Query 1769 GATGACGAGTCTCATGAAGACACCATTTAGATAAGAATG-TGCACCATCAAAGTCTCTCT 1827
|| ||||||||||||||||||||||| ||||||||| || |||| ||||||||| |||||
Sbjct 1824 GACGACGAGTCTCATGAAGACACCATATAGATAAGA-TGGTGCAACATCAAAGTTTCTCT 1882
Query 1828 ATATAAAATATTGTATACAATAAGT-ACAACTAATGAATATACACATATGTGCATAC--C 1884
||||||||| |||||||||| || | ||||||||||||||||| ||||||||||||| |
Sbjct 1883 ATATAAAATTTTGTATACAACAAATTACAACTAATGAATATACTCATATGTGCATACTGC 1942
Query 1885 AT----TA--ATGTATTATGTATATGCATGTTTGTCACCAAGGCTCGGTGGGTAAAAGAG 1938
|| || |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1943 ATACCATATTATGTATTATGTA-ATGCATGTTTGTCACCAAGGATCGGTGGGTAAAAGAG 2001
Query 1939 TTATAT-AA-TACTTATGGTTGCGATCAG 1965
||| || || | ||||| |||||||||||
Sbjct 2002 TTA-ATTAAATCCTTATAGTTGCGATCAG 2029
Score = 776 bits (420), Expect = 0.0
Identities = 551/613 (90%), Gaps = 14/613 (2%)
Strand=Plus/Plus
Query 1 CGCGTTCTACTAAAATAAAAGTGAAGCGCC-TTCCTCAGGATTTTCCCGAGTGAGTTTCG 59
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 CGCGTTCTACTAAAAT-AAAGTGAAGCGCCTTTCCTCAGGATTTTCCCGAGAAAGTTTCT 59
Query 60 CTTTCCTCCGAGAAAATTTCAGACTTAAATTTTCCGGAA-------TCTAATAAGGAGAA 112
||||||||||||||||| ||||| ||||||||| ||| ||| ||| ||||||
Sbjct 60 TTTTCCTCCGAGAAAATTGCAGACGTAAATTTTCATGAATTGTGGTTCTTATAGGGAGAA 119
Query 113 GCCATTGTTGAAGAAACTAGTCTCTCTGTTTCGAATCTTCAAATTCAGATTCAATATCTA 172
||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||
Sbjct 120 GCCATTGTTGAAGAAACTAGTCTCTGTGTTTTGAATCTTCAAATTCAGATTCGATCTCTA 179
Query 173 TCAGGAAAATTTCGCATGGGGGTGAAAGTAGCTTCTTCGTCTACTTTCCTTCAATGGACT 232
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 180 TCAGGAAAATTTCGCATGGGGGTGAAAGTAGCTTCTTCATCTCCGTTCCTTCAATGGACG 239
Query 233 ACTCAGCCTATTATTCATCAGTCTTCTTCACCATCTCAAACCCTAGCTTCGGGAACCATA 292
| ||||| | | ||||||| ||||||||||| ||||||||||||||||| ||| |||||
Sbjct 240 AATCAGCGTCTCGTTCATCAATCTTCTTCACCTTCTCAAACCCTAGCTTCCGGAGCCATA 299
Query 293 ACATCTCCTTCAAAACGACGTAGCACAGTACACGACGGCCGGTTTCTATCATGTCGTTTC 352
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 300 ACATCTCCTTCAAAACGACGTAGCACAGTACACGAAGGACGGTTTATATCATGTCGTTTC 359
Query 353 GTGACACAGAGACTAAACCGTTCGGCTCTTTTCGGAACTCCGTCGACGAAGCTTCATCGA 412
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 360 GTGCCACAGAGACTGAACCGTTCAGCTCTTTTCGGAACTCCGTCGACGAAGCTTCACCG- 418
Query 413 C-CCAAGTCATGTGAGCTATGGAAatcatcatcatcatcatcTAGACCGATCAAAACTCA 471
| |||| || |||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 419 CTCCAAATCCTGTGAGCTATGGGAATCATCATCATCATCATCTAGACCGATCAAAACTAA 478
Query 472 GTCGTTTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTCTCGaa 531
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 479 GTCAATTCGAAGAGTTTATAGCGCAAACTTAGATCCATTCTCCGACGAAGAGTTTTCAAA 538
Query 532 aaaaaTCCAAGAGCTAACTCTCAGATTCAATATCCCACACCATGACGACGACGAGA-ATT 590
||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||| |
Sbjct 539 AAAAATCCAAGAGCTAACTCTCAGATTCAGTGTCCCAAACCAAGACGACGACGAGAGAAA 598
Query 591 CAAT-C-GAGCCG 601
|||| | ||||||
Sbjct 599 CAATTCAGAGCCG 611
> Ahg470745 jgi|Araly1|470745|fgenesh2_kg.1__699__AT1G07280.1
Length=1827
Score = 291 bits (157), Expect = 2e-77
Identities = 343/427 (80%), Gaps = 36/427 (8%)
Strand=Plus/Plus
Query 588 ATTCAATCGAGCCGCCATGGAAC-GAGATGGTTCATTTGTCGAGTATTGAAATGAAAGCA 646
||||||| || ||||||||| | |||||||| || |||| || || || | |||||||
Sbjct 452 ATTCAATGGAACCGCCATGG-CCAGAGATGGTGCAAATGTCTAGCATCGAGAGGAAAGCA 510
Query 647 AACAGTGTTGATCTTCCTCTTTCACTTCGTATTATAAAGAAGAAACG-T-CA-ATGGGAA 703
|||||||| |||||||||||||| ||| | || |||||| ||||| | | || || |||
Sbjct 511 AACAGTGTCGATCTTCCTCTTTCGCTTAGGATCATAAAG-AGAAA-GTTACAGAT-GGAG 567
Query 704 GAAGGAG--TT-AAACAAGCT-GGTGAATCTGCGTGTTGCTC-GATGAATAAAGCTTTTT 758
||||||| || ||||||| | || ||||| || |||||||| | |||| | |||||| |
Sbjct 568 GAAGGAGTTTTGAAACAAG-TCGGAGAATCAGCTTGTTGCTCTG-TGAAGAGAGCTTTCT 625
Query 759 CTTCAATGGTGTTTATGA-TACGGGAGCTTCAGAGCTTTACTTTACATATGAGAGAGATT 817
|||||||||||||||||| || | || ||||| ||||| || ||||| ||||||||| ||
Sbjct 626 CTTCAATGGTGTTTATGATTA-GAGAACTTCAAAGCTTCACGTTACACATGAGAGAGCTT 684
Query 818 CTGT-TCTACGAAGACTTGCAA-GAGATT-TTGCTA-AGAGTTAGAGAAGAGATGCAA-C 872
|| | ||| |||||| |||||| || ||| || | | | || ||| |||| |||||| |
Sbjct 685 CT-TCTCTTCGAAGATTTGCAAGGA-ATTCTT-C-ATCGTGTGAGAAAAGAAATGCAAGC 740
Query 873 AATC-TTTCGTTTGGTTGTTTCAACAAGTTTTCTCTGCTACTCCTACGTTGATGGTTTAT 931
||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 741 -ATCGTTT-GTTTGGTTGTTTCAACAAGTTTTCTCTGCTACTCCTACTTTGATGGTCTCT 798
Query 932 GTTATGATTCT-CTTAGCCAATTTCACTGTTTATTCTATCG-GTAACAACAGCTCCGCTT 989
|||||||| || || || |||||||| ||||| ||||| | | | |||| || ||||
Sbjct 799 GTTATGATCCTTCTC-GCTAATTTCACGGTTTACTCTATTGAG-AGCAACT-CT--GCTT 853
Query 990 TAGCCGC 996
|||||||
Sbjct 854 TAGCCGC 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80865590135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5