BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29970.1 Length=3378 Score E Sequences producing significant alignments: (Bits) Value Ahg481905 jgi|Araly1|481905|fgenesh2_kg.4__965__AT2G29970.1 4835 0.0 > Ahg481905 jgi|Araly1|481905|fgenesh2_kg.4__965__AT2G29970.1 Length=3374 Score = 4835 bits (2618), Expect = 0.0 Identities = 3146/3391 (93%), Gaps = 75/3391 (2%) Strand=Plus/Plus Query 1 ATAAAACATAAAAACTATATATTATAAATTAAAAACACTTCTTTTTCATAAAAGCGACTA 60 ||| |||||||||||||||||||||||| |||| | | |||||||||||||||||||||| Sbjct 1 ATATAACATAAAAACTATATATTATAAA-TAAATATATTTCTTTTTCATAAAAGCGACTA 59 Query 61 CACGGTTTTCATTTCTTTGTCGTAAAAATCCCATTTCCAGCTTTAAAAATTTCACGCTTT 120 |||||||||||||||||||||||||||||| ||||||||||||| ||| | | Sbjct 60 CACGGTTTTCATTTCTTTGTCGTAAAAATCTCATTTCCAGCTTT---TGTTT-A----TA 111 Query 121 GTTTTTGTTTATAGTTTCTTGTATGAATTTTATTGATTGGTGTTGTGGTTTGGTTTACTT 180 | ||| || || |||| | || |||||||| || | | |||||||||||||| || Sbjct 112 G--TTTCTTGAT--TTTC---T-TG--TTTTATTGGTT-G-G-TGTGGTTTGGTTTAGTT 158 Query 181 TTAATTTCGAATTTTTTATAACTAAACCGGCGACGATGCCGACACCAGTAACCACGGCGA 240 ||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 159 TTAATTTCGAA--TTTT-CCACTAAACCGGCGACGATGCCGACACCGGTAACCACAGCGA 215 Query 241 GACAATGTTTAACGGAAGAAACAGCGCGTGCATTAGACGACGCAGTCTCCGTCGCGCGTC 300 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 216 GACAATGTTTAACGGAAGAAACAGCACGTGCATTAGACGACGCAGTCTCCGTCGCGCGTC 275 Query 301 GTCGAAGCCACGCACAAACGACGTCACTTCACGCCGTTTCAGGTCTTTTAACAATGCCTT 360 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 276 GACGAAGCCACGCACAAACGACGTCACTTCACGCCGTTTCAGGTCTTTTAACGATGCCTT 335 Query 361 CATCGATTCTCCGAGAAGTGTGTATCTCACGCGCCGCCCACAACACACCGTACTCTTCAC 420 | || |||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 336 CCTCAATTCTCCGAGAAGTGTGTATCTCACGCGCCGCTCATAACACACCGTACTCTTCAT 395 Query 421 GTCTCCAGTTTCGCGCGCTTGAGCTCTGCGTCGGCGTTTCTCTAGACAGATTACCTTCTT 480 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 GTCTCCAATTTCGCGCGCTTGAGCTCTGCGTCGGCGTTTCTCTAGACAGATTACCTTCTT 455 Query 481 CGAAAT------------CAAC-AC--CAACGACGACGGTGGAAGAAGATCCTCCGGTCT 525 |||||| |||| || |||| |||||||||||||||||||||||||| | Sbjct 456 CGAAATCACCACCACCACCAACAACAACAACAACGACGGTGGAAGAAGATCCTCCGGTGT 515 Query 526 CAAACTCTCTCATGGCGGCGATCAAAAGATCTCAAGCGACTCAACGACGTCATCCAGAGA 585 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 516 CAAACTCACTCATGGCGGCGATCAAAAGATCTCAAGCCACTCAACGACGTCATCCAGAGA 575 Query 586 CTTATCATCTTCATCAAATCCATGG--A-AACAACAACACGGAAACGACGTCGGTTTTGA 642 ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| Sbjct 576 CTTATCATCTTCATCAAATCCATGGAAACAACAACAACACTCAAACGACGTCGGTTTTGA 635 Query 643 AAGTTGAGTTGAAGTATTTTATACTATCCATTTTAGATGACCCGATTGTGAGTCGGGTCT 702 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 636 AAGTTGAGTTAAAGTATTTTATACTATCCATTTTAGATGACCCGATTGTGAGTCGGGTTT 695 Query 703 TTGGTGAAGCCGGGTTTAGAAGCACCGACATTAAACTCGACGTGCTTCATCCTCCGGTGA 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 696 TTGGTGAAGCCGGGTTTAGAAGCACCGACATTAAACTCGACGTGCTTCATCCTCCGGTGA 755 Query 763 CGTCTCAATTCTCTTCACGGTTCACGTCAAGATCTCGTATTCCTCCTCTGTTTTTATGTA 822 ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 756 CGTCTCAGTTCTCTTCACGGTTTTCTTCAAGATCTCGTATTCCTCCTCTGTTTTTATGTA 815 Query 823 ACTTACCGGAATCTGACT-CGGGTCGGGTTAGATTCGGGTTTCCGTTTGGTGATCTCGAC 881 || ||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| Sbjct 816 ACCTACCGGAATCTGA-TCCGGGTCGGGTTAGATTCGGGTTTCCGTTGGGTGATCTCGAC 874 Query 882 GAGAACTGTAGAAGAATCGGTGAAGTTTTAGCG-AGGAAAGATAAGAAGAATCCATTACT 940 |||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| Sbjct 875 GAGAACTGTAGAAGAATCGGAGAAGTTTTAG-GAAGGAAAGATAAGAAGAATCCATTACT 933 Query 941 AGTTGGTGTTTGTGGTGTTGAAGCTCTTAAAACGTTTACTGATTCTATAAACAGAGGAAA 1000 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 934 AGTTGGTGTTTGTGGTGGTGAAGCTCTTAAAACGTTTACTGATTCTATAAACAGAGGAAA 993 Query 1001 GTTTGGTTTTTTACCTTTGGAGATTAGTGGGTTAAGTGTAGTTAGTATAAAGATTAGTGA 1060 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 994 GTTTGGTTTTTTACCTCTGGAGATTAGTGGGTTAAGTGTAGTTAGTATAGAGATTAGTGA 1053 Query 1061 AGTTTTAGTTGATGGATCAAGAATAGATATAAAGTTTGATGATTTAGGGAGATTGAAGTC 1120 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1054 TGTTTTAGTTGATGGATCAAGAATCGATATAAAGTTTGATGATTTAGGAAGATTGAAGTC 1113 Query 1121 AGGGATGGTTTTGAACCTTGGAGAGTTAAAGGTTTTAGCTAGTGATGTTTTCTCTGTTGA 1180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1114 AGGGATGGTTTTGAATCTTGGAGAGTTAAAGGTTTTAGCTAGTGATGTTTTCTCTGTT-A 1172 Query 1181 -TGTGATTGAGAAGTTTGTGTTGAAGCTCGCTGATTTGTTGAAGCTTCACCGTGAGAAAC 1239 |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| | Sbjct 1173 GTGTGGTTGAGAAGTTTGTGTTGAAGCTCTCTGATTTGTTGAAGCTTCACAGTGAGAAGC 1232 Query 1240 TTTGGTTTATTGGAAGTGTTTCGAGTAATGAGACGTATTTGAAGCTGATTGAGAGGTTTC 1299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1233 TTTGGTTTATTGGAAGTGTTTCGAGTAATGAGACGTATTTGAAGCTGATTGAGAAGTTTC 1292 Query 1300 CAACGATTGATAAAGATTGGAATCTTCATCTTCTTCCTATTACATCTTCAAGTCAAGGGC 1359 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1293 CGATGATTGATAAAGATTGGAATCTTCATCTTCTTCCTATTACATCTTCAAGTCAAGGGG 1352 Query 1360 TTTATCCAAAATCTAGTTTGATGGGATCTTTTGTTCCATTTGGAGGGTTTTTCTCATCCA 1419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1353 TTTATCCAAAATCTAGTTTGATGGGATCTTTTGTTCCATTTGGAGGGTTTTTCTCATCAA 1412 Query 1420 CATCGGATTTTAGAATACCGTCTAGTAGCTCGATGAATCAGACTTTACCTCGGTGTCATC 1479 |||||||||||||| |||||| ||||| |||||||||||||| ||| ||||||||||||| Sbjct 1413 CATCGGATTTTAGAGTACCGTTTAGTAACTCGATGAATCAGAGTTTGCCTCGGTGTCATC 1472 Query 1480 TTTGTAACGAGAAGTATGAGCAAGAAGTCACCGCCTTTGCTAAGTCGGGGTCGATG-ATC 1538 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 1473 TTTGTAATGAGAAGTATGAGCAAGAAGTCACCGCCTTTGCTAAGTCCGGGTCGA-GTCTC 1531 Query 1539 GATGATCAGTGTTCGGAGAAGTTACCTTCTTGGTTACGAAATGTGGAGCATGAACACGAG 1598 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1532 GATGATCAGTGTTCAGAGAAGTTACCTTCTTGGTTACGAAATGTGGAGCATGAACAAGAC 1591 Query 1599 AAAGGAAATCTCGGAAAGGTTAAAGATGATCCAAACGTATTAGCCTCTCGGATTCCCGCT 1658 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1592 AAAGGAAGTCTCGGAAAGGCTAAAGATGATCCAAACGTATTAGCCTCTCGGATTCCCGCT 1651 Query 1659 CTGCAGAAGAAATGGGACGACATTTGTCAAAGAATCCATCAAACTCCGGCGTTTCCTAAA 1718 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1652 CTGCAGAAGAAATGGGACGACATTTGTCAAAGAATCCATCAAACTCCGGCTTTTCCTAAA 1711 Query 1719 CTCAGTTTTCAGCCCGTTAGACCGCAGTTCCCGCTTCAGCTTGGTT-CTTCTAGCCAGAC 1777 ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| | Sbjct 1712 ATCAGTTTTCAGCCTGTTAGACCGCAGTTCCCGCTTCAGCT-GGTTTCTTCTAGCCAGTC 1770 Query 1778 CAAGATGAGTCTTGGAAGCCCAACTGAGAAAATTGTTTGCA-C-T-AGGACGTCTGAAAG 1834 |||||||||||| ||||||||||||||| ||| |||| ||| | | |||||||||||||| Sbjct 1771 CAAGATGAGTCTCGGAAGCCCAACTGAGCAAAGTGTTCGCAGCATTAGGACGTCTGAAAG 1830 Query 1835 CTTTCAAGGGATGGTGGCTCTACCGCAGAATCCGCCACACCAACCTGGTTTATCAGTCAA 1894 |||||| |||| || ||| | ||||||||| ||||||||||| ||||||||||| || Sbjct 1831 CTTTCAGGGGACGG---CTCAAGTGCAGAATCCACCACACCAACCCGGTTTATCAGTTAA 1887 Query 1895 AATCTCAAAGCCAAAACATACTGAGGATCTCTCAAGTT-CAACAACGAACTCGCCTTTGA 1953 |||||||| |||||||| || ||||||||| ||||| || |||||||||||||||||| Sbjct 1888 GATCTCAAAACCAAAACAGACAGAGGATCTCACAAGTCGCA-CAACGAACTCGCCTTTGA 1946 Query 1954 GCTTTGTTACAACAGATTTAGGGTTGGGAACAATCTACGCATCGAAGAACCAAGAACCAA 2013 ||| |||||||||||||||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 1947 GCTGTGTTACAACAGATTTAGGATTGGGAACAATCTATGCATCGAAAAACCAGGATTCAA 2006 Query 2014 GCACACCAGTATCAGTTGAAA-GGAGAGACTTTGAGGTGATCAAAGAGAAACAATTGTTG 2072 |||||| ||||| | | ||| ||||||||||||||||||||||||| ||||||| |||| Sbjct 2007 ACACACCTGTATC-GCTCAAAAGGAGAGACTTTGAGGTGATCAAAGAAAAACAATCGTTG 2065 Query 2073 -TCAGCTTCGAGATACTGCAAAGATTTCAAGTCTCTCAGGGAACTACTCTCTCGAAAAGT 2131 | ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2066 GTG-GCTTCAAGATACTGCAAAGATTTCAAGTCTCTCAGGGAATTACTCTCTCGAAAAGT 2124 Query 2132 CGGTTTTCAGAACGAAGCTGTGAATGCGATTAGCGAAATTGTTTGTGGATACAGAGATGA 2191 |||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 2125 CGGTTTTCAGAATGAAGCTGTGAATGCCATTAGCGAAATCGTTTGTGGATACAGAGATGA 2184 Query 2192 GTCCAGGAGAAGAAACAACCACGTAGCAACCACAAGTAATGTTTGGCTTGCTCTTCTTGG 2251 |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||| Sbjct 2185 GTCCAGGAGAAGAAACCAC-A--TAGCAACCACAAGTAATGTTTGGCTTGCTCTTCTTGG 2241 Query 2252 ACCTGATAAAGCCGGGAAGAAGAAAGTAGCATTAGCTCTTGCTGAAGTCTTCTGTGGTGG 2311 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || || Sbjct 2242 ACCTGATAAAGCCGGGAAGAAGAAAGTAGCATCAGCTCTTGCCGAAGTCTTCTGCGGGGG 2301 Query 2312 ACAAGACAACTTCATCTGTGTGGATTTCAAGTCACAAGACAGTCTTGACGATAGATTCAG 2371 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2302 CCAAGACAACTTCATCTGTGTGGATTTCAAGTCACAGGACAGTCTTGACGATAGATTCAG 2361 Query 2372 AGGGAAAACAGTTGTTGATTACATTGCTGGCGAAGTGGCGAGACGTGCGGATTCTGTTGT 2431 ||| |||||||||||||||||||||||| |||||||||||| || |||||||||||||| Sbjct 2362 AGGAAAAACAGTTGTTGATTACATTGCTAACGAAGTGGCGAGGCGGGCGGATTCTGTTGT 2421 Query 2432 TTTCATCGAAAACGTGGAAAAGGCCGAGTTCCCTGATCAGATCAGATTGTCTGAGGCTAT 2491 ||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||| Sbjct 2422 TTTCATCGAAAACGTGGAAAAAGCTGAGTTCCCTGATCAAATCAGATTGTCTGATGCTAT 2481 Query 2492 GAGAACTGGAAAACTCCGTGACTCGCATGGGAGAGAGATCAGTATGAAAAATGTTATAGT 2551 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2482 TAGAACTGGAAAACTCCGGGACTCGCATGGGAGAGAGATCAGTATGAAAAATGTTATAGT 2541 Query 2552 TGTTGCTACTATTTCTGGAAGTGATAAAGCCAGTGATTGTCATGTTCTTGAAGAACCAGT 2611 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 2542 TGTTGCTACTATTTCTGGAAGTGATAAAGACAGTGATTGTCATGTTCTTGAAGAACCGGT 2601 Query 2612 CAAATACTCCGAGGAAAGAGTTCTCAATGCCAAAAACTGGACACTTCAGATAAAACTAGC 2671 |||||| || |||||||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 2602 CAAATATTCAGAGGAAAGAGTTCTCAGTGCCAAAAACTGGAAACTTCAGATAAGACTAGC 2661 Query 2672 -AGACACTTCAAATGTTAACAAGAATGGTCCCAATAAGAGAAGACAGGAGGAGGCAGAAA 2730 | |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 2662 CA-ACACTTCAAATGTTAACAAGAATGGTCCGAATAAGAGAAGACAAGAGGAGGCAGAAA 2720 Query 2731 CAGAGGTGACAGAGCTTCGAGCCCTTAAGTCTCAGCGTTCGTTTCTTGATCTAAATCTTC 2790 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 2721 CAGAGGTGACAGAGCTTCGAGCCCTTAAGTCTCAACGTTCGTTTCTTGATCTGAATCTTC 2780 Query 2791 CTGTGGATGAGATTGAAGCAAACGAAGACGAAGCGTATACAATGTCGGAGAACACAGAAG 2850 ||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2781 CTGTGGATGAGATAGAAGCAAACGAAGACGAAGCGTATACAATGTCCGAGAACACGGAAG 2840 Query 2851 CTTGGCTTGAGGATTTTGTGGAACAAGTAGATGGGAAAGTGACGTTCAAGCTTATTGACT 2910 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 2841 CTTGGCTTGAGGATTTTGTGGAACAAGTAGACGGGAAAGTGACTTTCAAGCTTATTGACT 2900 Query 2911 TTGATGAGTTAGCAAAAAACATAAAAAGGAATATTCTTTCGCTATTTCATCTGTCTTTTG 2970 ||||||||||||| || ||| |||||||||| || |||||||||||||||| |||||||| Sbjct 2901 TTGATGAGTTAGCTAAGAACGTAAAAAGGAACATCCTTTCGCTATTTCATCGGTCTTTTG 2960 Query 2971 GACCTGAAACACATCTAGAGATCGAAAACGATGTGATCCTTAAGATTCTTGCTGCTTTAA 3030 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| Sbjct 2961 GACCTGAAACACATCTAGAGATCGAAAACGATGCGATCCTTAAGATTCTTGGTGCCTTAA 3020 Query 3031 GATGGTCATCAGATGAAGAGAAAACATTTGATCAGTGGCTGCAAACTGTTCTTGCTCCAA 3090 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 3021 GATGGTCATCAGATGAAGAGAAAACATTTGATCAATGGCTGCAAAATGTTCTTGCTCCAA 3080 Query 3091 GCTTTGCTAAAGCGAGACAAAAGTGTGTTCCCGCTGCTCCTTTTTCTGTGAAACTTGTTG 3150 ||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| Sbjct 3081 GCTTTACTAAAGCGAGACAAAAGTATGTTCCCGCTACTCCTTTTGCTGTGAAACTTGTTG 3140 Query 3151 CCTCTAGAGAGTCTCCGGCTGAAGAGGAGACTACAGGGATACAACAGTTTCCGGCGAGAG 3210 |||||||||| ||| ||||||||||||| ||||| || |||||||||||||||||||||| Sbjct 3141 CCTCTAGAGATTCTTCGGCTGAAGAGGAAACTACCGGAATACAACAGTTTCCGGCGAGAG 3200 Query 3211 TCGAAGTGATCTGATTATT-GTTG-TTGTAATTTTATGTATAAGTGATGATAGTTATATA 3268 ||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||| Sbjct 3201 TCGAAGTGATCTGATTATTTGT-GATTGTAATTTCATGTATAAGTGATGATAGTTATATA 3259 Query 3269 GATTATCCCAGAGTTTTGTAATCGGCTTGGTTTGAGTTTGTTCTTTGTCACTAAATGTAT 3328 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3260 GATTTTCCCAGAGTTTTGTAATCGGCTTGGTTTGAGTTTGTGCTTTGTCACTAAATGTAT 3319 Query 3329 ATATTATATAGTCATAAAGCTGAGCTATTAA 3359 || | |||||| | |||||||||| |||||| Sbjct 3320 AT-T-ATATAGGCTTAAAGCTGAGTTATTAA 3348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127530927123 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5