BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29980.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481907 jgi|Araly1|481907|fgenesh2_kg.4__967__AT2G29980.1 2215 0.0
> Ahg481907 jgi|Araly1|481907|fgenesh2_kg.4__967__AT2G29980.1
Length=1415
Score = 2215 bits (1199), Expect = 0.0
Identities = 1339/1403 (95%), Gaps = 24/1403 (2%)
Strand=Plus/Plus
Query 70 tctctctcttctctctttctctccccctctctcCGGCGATGGTTGTTGCTATGGACCAAC 129
|||||||||||||||||||| || | || |||||||||||||||||||||||||||||||
Sbjct 26 TCTCTCTCTTCTCTCTTTCTATCTCTCTTTCTCCGGCGATGGTTGTTGCTATGGACCAAC 85
Query 130 GCACCAATGTGAACGGAGATCCCGGCGCCGGAGACCGGAAGAAAGAAGAAAGGTTTGATC 189
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 86 GCACGAATGTGAACGGAGATTCCGGCGCCGGAGACCGGAAGAAAGAAGAAAGGTTTGATC 145
Query 190 CGAGTGCACAACCACCGTTCAAGATCGGAGATATAAGGGCGGCGATTCCTAAGCACTGTT 249
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CGAGTGCACAACCACCGTTTAAGATCGGAGATATAAGGGCGGCGATTCCTAAGCACTGTT 205
Query 250 GGGTTAAGAGTCCTTTGAGATCAATGAGTTACGTCGTCAGAGACATTATCGCCGTCGCGG 309
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 GGGTAAAGAGTCCTTTGAGATCAATGAGTTACGTCGTCAGAGACATTATCGCCGTCGCGG 265
Query 310 CTTTGGCCATCGCTGCCGTGTATGTTGATAGCTGGTTCCTTTGGCCTCTTTATTGGGCCG 369
||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 266 CTTTGGCCATCGCCGCCGTGTATTTTGATAGCTGGATCCTTTGGCCTCTTTATTGGGCCG 325
Query 370 CCCAAGGAACACTTTTCTGGGCCATCTTTGTTCTCGGCCACGACTGTGGACATGGGAGTT 429
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 326 CACAAGGAACACTTTTCTGGGCCATCTTCGTTCTCGGCCACGACTGTGGACATGGGAGTT 385
Query 430 TCTCAGACATTCCTCTACTGAATAGTGTGGTTGGTCACATTCTTCATTCTTTCATCCTCG 489
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TCTCAGACATTCCTCTGCTGAATAGTGTGGTTGGTCACATTCTTCATTCTTTCATCCTCG 445
Query 490 TTCCTTACCATGGTTGGAGAATAAGCCACCGGACACACCACCAGAACCATGGCCATGTTG 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TTCCTTACCATGGTTGGAGAATAAGCCACCGGACACACCACCAGAACCATGGCCATGTTG 505
Query 550 AAAACGACGAGTCATGGGTTCCGTTACCAGAAAGGGTGTACAAGAAATTGCCCCACAGTA 609
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 506 AAAACGACGAGTCATGGGTTCCGTTGCCAGAAAGGGTGTACAAGAAATTGCCCCACAGTA 565
Query 610 CTCGGATGCTCAGATACACTGTCCCTCTCCCCATGCTCGCATATCCTCTCTATTTGTGCT 669
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 566 CTCGGATGCTAAGATACACTGTCCCTCTCCCCATGCTTGCTTATCCTCTCTATTTGTGCT 625
Query 670 ACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 ACAGAAGTCCTGGAAAAGAAGGATCACATTTTAACCCATACAGTAGTTTATTTGCTCCAA 685
Query 730 GCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTTGGTCCATAATGTTCGTCAGTCTTA 789
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 686 GCGAGAGAAAGCTTATTGCAACTTCAACTACTTGTTGGTCCATAATGTTTGTCACTCTTA 745
Query 790 TCGCTCTATCTTTCGTCTTCGGTCCACTCGCGGTTCTTAAAGTCTACGGTGTACCGTACA 849
|||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 746 TCGCTCTATCATTCATCTTCGGTCCACTCGCGGTTCTCAAAGTATACGGTGTACCGTACA 805
Query 850 TTATCTTTGTGATGTGGTTGGATGCTGTCACGTATTTGCATCATCATGGTCACGATGAGA 909
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 806 TCATCTTTGTGATGTGGTTGGACGCTGTCACGTATTTACATCACCATGGTCACGATGAGA 865
Query 910 AGTTGCCTTGGTATAGAGGCAAGGAATGGAGTTATCTACGTGGAGGATTAACAACAATTG 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AGTTGCCTTGGTATAGAGGCAAGGAATGGAGTTATCTACGTGGAGGATTAACAACAATTG 925
Query 970 ATAGAGATTACGGAATCTTTAACAACATTCATCACGACATTGGAACTCACGTGATCCATC 1029
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 926 ATAGAGATTACGGAATCTTCAACAACATTCATCACGACATTGGAACTCACGTGATCCATC 985
Query 1030 ATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGACGCCACGAAAGCAGCTAAACATG 1089
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 986 ATCTCTTCCCACAAATCCCTCACTATCACTTGGTCGATGCCACGAAAGCAGCTAAACATG 1045
Query 1090 TGTTGGGAAGATACTACAGAGAACCAAAGACGTCAGGAGCAATACCGATCCACTTGGTGG 1149
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1046 TGTTGGGAAGATACTACAGAGAACCAAAGACGTCAGGAGCAATACCAATCCACTTGGTGG 1105
Query 1150 AGAGTTTGGTCGCAAGTATTAAGAAAGATCATTACGTCAGCGACACTGGTGATATTGTCT 1209
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1106 AGAGTTTGGTCGCAAGTATTAAGAAAGATCATTACGTCAGTGACACTGGTGATATTGTCT 1165
Query 1210 TCTACGAGACAGATCCAGATCTCTACGTTTACGCTTCTGACAAATCTAAAATCAATTAAT 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 TCTACGAGACAGATCCAGATCTCTACGTTTACGCTTCTGACAAATCTAAAATCAATTAAT 1225
Query 1270 CTC--C-------ATTTGTTTAGCTCTATTAGGAATAAACCAGCCCACTTTTAAAATTTT 1320
||| | ||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1226 CTCTTCCTTTTTCATTTGTTTAGCTCTATTAGGAATAAACTAGCCCTCTTTT----TTTT 1281
Query 1321 TATT-TCTTGTTGTTTTTAAGTTAAAAGTGTACTCGTGAAACTCttttttttttcttttt 1379
| || |||||||||||||||||||||||||| ||||||||||||| | |||||| |||||
Sbjct 1282 T-TTGTCTTGTTGTTTTTAAGTTAAAAGTGTTCTCGTGAAACTCTCTCTTTTTT-TTTTT 1339
Query 1380 tttttATTAATGTATTTACATTACAAGGCGTAAAGTTTTGTTA-TTTCTCTTTTCTTCTT 1438
|| ||||||||||||||||||| |||||||||||||| ||| ||||||||| ||
Sbjct 1340 -----AT-AATGTATTTACATTACAAGACGTAAAGTTTTGTTCCTTT-TCTTTTCTTTTT 1392
Query 1439 TTAGTTACCATCAAAAAGATTTC 1461
|||||||||||||||||||||||
Sbjct 1393 TTAGTTACCATCAAAAAGATTTC 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5