BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30020.1 Length=1402 Score E Sequences producing significant alignments: (Bits) Value Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1 2052 0.0 > Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1 Length=1405 Score = 2052 bits (1111), Expect = 0.0 Identities = 1314/1411 (93%), Gaps = 17/1411 (1%) Strand=Plus/Plus Query 3 AAATCGAAATCAAAATATAGAAACGATGTCTTGCTCCGTCGCCGTATGTAATTCTCCGGT 62 ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1 AAATCGAAATCGGAATCTAGAAACGATGTCTTGTTCCGTCGCCGTTTGTAATTCTCCGGT 60 Query 63 GTTTTCACCGTCGTCTTCTCTATTCTGCAACAAATCTTCGATTCTCTCGTCACCGCAAGA 122 ||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 61 GTTTTCACCGTCGTCGTCTCTATTCTGCAACAAAGCTTCGATTCTCTCTTCACCGCAAGA 120 Query 123 ATCTCTTTCTCTAACGCTTTCTCATCGCAAACCTCAGACCTCTTCTCCTTCCTCTCCATC 182 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || Sbjct 121 ATCTCTTTCTCTAACTCTTTCTCATCGCAAACCTCAAACCTCTTCTCCTTCCTCTCCTTC 180 Query 183 CACCACCGTTTCTTCTCCTAAATCTCCATTTCGTCTCCGTTTCCAGAAACCTCCGTCCGG 242 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 181 CACCACCGTTTCTTCTCCTAAATCGCCGTTTCGTCTCCGTTTCCAGAAACCTCCGTCCGG 240 Query 243 ATTCGCTCCTGGTCCATTATCTTTTGGATCTGAATCTGTTTCTGCATCCTCTCCTCCGGG 302 ||||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 241 ATTCGCTCCTGCTCCGTTATCGTTTGGATCTGAGTCTGTTTCTGCATCGTCTCCTCCGGG 300 Query 303 AGGTGTTTTAAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATT 362 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGTGTTTTGAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATT 360 Query 363 TGTAGCTCCGATTTCTTCATCGGC--C-GCTGTGGCTGCGACGCCgagagaggagtgtag 419 ||||||||||||||| || |||| | ||||||||||| |||||||| |||||| |||| Sbjct 361 TGTAGCTCCGATTTCGTCGGCGGCGGCGGCTGTGGCTGCAACGCCGAGGGAGGAGAGTAG 420 Query 420 agaggttgagagagaAGGTGATGGTTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGC 479 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 AGAGGTTGAGAGAGAAGGTGATGGTTACTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGC 480 Query 480 TATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGAT-TT 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 481 TATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATATT 540 Query 539 TCGGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCAGCTAAGAACTTAG 598 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 541 T-GGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCGGCTAAGAACTTAG 599 Query 599 ATAAGAACATTGTAGAAGAAGTAGTTGGTA-AGAGAGACGAGTCTGAGATAGCTGAAGCG 657 |||||||||||||||||||| |||||||| | ||||||||||||||| ||||||| ||| Sbjct 600 ATAAGAACATTGTAGAAGAAATAGTTGGTTTA-AGAGACGAGTCTGAGGTAGCTGACGCG 658 Query 658 GTGAAACATGGTTACTTGGCAACAGACGC-GTCGTTTCTTAAGGAGGAAGACGTTAAGGG 716 ||||||| ||||||||| |||||||||| | |||||||||||||| |||| || ||||| Sbjct 659 GTGAAACGCGGTTACTTGACAACAGACGCAG-CGTTTCTTAAGGAGAAAGATGTCAAGGG 717 Query 717 TGGTTCATGCTGTGTCACGGCTCTGGTTAACGAAGGGAACCTTGTTGTGTCTAACGCCGG 776 |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||| Sbjct 718 TGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGGGAACCTTGTTGTGTCTAATGCCGG 777 Query 777 TGACTGTCGTGCTGTTATGAGTGTAGGAGGTGTAGCTAAGGCTTTATCTTCTGATCACCG 836 ||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 778 TGACTGTCGCGCTGTTATGAGTGTAGGAGGTGTGGCTAAGGCTCTATCTTCTGATCACCG 837 Query 837 CCCGTCTAGAGACGATGAACGGAAAAGAATTGAAACCACGGGAGGATATGTTGATACGTT 896 |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 838 TCCGTCTAGAGACGACGAAAGGAAAAGAATTGAAACCACGGGTGGATATGTTGATACGTT 897 Query 897 TCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCAAGAGGAATTGGAGATGCTCA 956 ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 898 TCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCGAGAGGGATCGGAGATGCTCA 957 Query 957 ACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATTTCGAGAATCGAGCATGACCA 1016 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 958 ACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATCTCGAGAATTGAGCAGGACCA 1017 Query 1017 TGAGTTTTTGATCTTGGCATCTGATGGTTTATGGGATAAAGTGAGTAACCAAGAAGCAGT 1076 |||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 1018 TGAGTTCTTGATCTTGGCGTCAGATGGTTTATGGGATAAGGTGAGTAACCAAGAAGCAGT 1077 Query 1077 AGACATTGCTCGTCCTCTC-TGCTTAGGAACCGAGAAGCCATTGTTGTTAGCTGCCTGTA 1135 ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| Sbjct 1078 AGACATTGCTCGTCC-CTTATGCTTAGGAACCGAGAAGCCATTGTTGTTAGCAGCCTGTA 1136 Query 1136 AGAAGCTTGTCGATTTATCTGCTTCACGAGGCTCGTCTGATGATATCAGTGTGATGTTGA 1195 |||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||| Sbjct 1137 AGAAGCTTGTCGATCTCTCGGCTTCACGAGGCTCGTCGGATGATATCAGTGTGATGTTGA 1196 Query 1196 TCCCTTTACGCCAGTTCATATAGAAAA-GAGAGGCATCTTAGAAGATTTTAGATATATGA 1254 ||||||| ||||||||| ||||||| | ||| |||||||||||||||||||||||||||| Sbjct 1197 TCCCTTTGCGCCAGTTCGTATAGAAGATGAGTGGCATCTTAGAAGATTTTAGATATATGA 1256 Query 1255 TAAACGTTAGAAATTTGGAGGTTTTATATGATTTAGTTCTTTTGTTTAACTT-GATCCAT 1313 ||| |||||||| |||||||||||| | ||||||||||||||| |||||||| ||| ||| Sbjct 1257 TAA-CGTTAGAACTTTGGAGGTTTTCTGTGATTTAGTTCTTTT-TTTAACTTTGATTCAT 1314 Query 1314 TCATTTATTTATTCTTTCTAACTTAGTGAACAAA-GCTAAACTCAT-TGTGGCTTATGAT 1371 |||||||||||||||||||||||||||||| ||| |||||| | | ||| || |||||| Sbjct 1315 TCATTTATTTATTCTTTCTAACTTAGTGAAAAAAAGCTAAATTTAAATGTAGCCTATGAT 1374 Query 1372 TACTTGTATGATTCGAGCATTGGCCGAAATT 1402 ||||||||||||||||||||| | ||||||| Sbjct 1375 TACTTGTATGATTCGAGCATTTGTCGAAATT 1405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52412177120 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5