BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30040.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104 1694 0.0
> Ahg344762 jgi|Araly1|344762|fgenesh1_pg.C_scaffold_4001104
Length=1239
Score = 1694 bits (917), Expect = 0.0
Identities = 1133/1234 (92%), Gaps = 27/1234 (2%)
Strand=Plus/Plus
Query 38 ATGGAGAAACAGAACATTATCTCAAACACTTCTTCTTCTTCGTCTTCTTGGATTCGTGGT 97
||||||||||||||||||||| |||||| |||| | ||||||||||||||||||
Sbjct 1 ATGGAGAAACAGAACATTATCACAAACA------CTTC-T--TCTTCTTGGATTCGTGGT 51
Query 98 TCTTGTGTTGGAAGAGGTTGTTTTGGTACAGTAAGCAAAGCTTTGAGTAAAATCGACGGT 157
|||||| ||||| |||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 52 TCTTGTATTGGACGAGGTTGTTTTGGTTCCGTTAGCAAAGCTTTGAGTAAAATCGACGGT 111
Query 158 GGACTTTTCGCCGTGAAGTCGATAGATCTCGCCACGTGTCTTCCTTCTCAAGCAGAGTCG 217
||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||
Sbjct 112 GGAGTTTTCGCCGTGAAGTCTATAGACCTCTCCACGTGTCTTCCTTCTCAAGCCGAGTCG 171
Query 218 TTAGAGAACGAAATCGTTATTCTACGGTCGATGAAGTCTCATCCAAACATAGTGAGGTTT 277
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 172 TTAGAGAACGAAATCGTTATTCTCCGGTCGATGAAGTCTCATCCAAACATAGTGAGGTTT 231
Query 278 CTCGGTGATGATGTGTCTAAAGAAGGAACGGCGTCGTTTCGAAATCTTCATTTAGAGTAT 337
||||| ||||| || ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 232 CTCGGCGATGACGTTTCTAAAGAAGGAACGACGTCGTTTCGTAATCTTCATTTAGAGTAT 291
Query 338 TCACCGGAAGGTGACGTTGCTAACGGTGGAATCGTTAACGAAACGCTTCTCAGGCGTTAC 397
||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||||
Sbjct 292 TCACCGGAAGGTGACGTGGCAAACGGTGGAATTGTCAACGAAACGCTTCTCCGGCGTTAC 351
Query 398 GTGTGGTGTCTTGTCTCTGCTTTGAGTCACGTTCATTCTAACGGAATTGTTCACTGCGAC 457
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 352 GTGTGGTGTCTTGTCTCTGCTCTGAGTCACGTTCATGCTAACGGAATTGTTCACTGCGAC 411
Query 458 GTTAAATCTAAGAACGTTCTTGTTTTTAACGGTGGTAGCTCCGTTAAGCTAGCGGATTTT 517
||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||
Sbjct 412 GTTAAATCTAAGAACGTTCTTGTGTTTAACGGTAGTAGCTCCGTTAAGCTGGCGGATTTT 471
Query 518 GGATCGGCGGTTGAGTTTGAGAAATCTACGATTCATGTTTCGCCACGTGGAAGTCCGCTT 577
||||||||||||| |||||||||||| ||| |||| | ||||||||||||||||||||||
Sbjct 472 GGATCGGCGGTTGTGTTTGAGAAATCGACGGTTCAGGCTTCGCCACGTGGAAGTCCGCTT 531
Query 578 TGGATGGCTCCGGAGGTGGTTAGAAGAGAGTACCAAGGACCGGAGAGTGACGTGTGGTCT 637
|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 532 TGGATGGCTCCGGAGGTGATTAGACGTGAGTACCAAGGACCGGAGAGTGACGTGTGGTCT 591
Query 638 TTAGGGTGTACCGTCATCGAGATGCTCACCGGAAAACCAGCTTGGGAAGATCACGGTTTC 697
||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 592 TTAGGATGTACGGTCATAGAGATGCTCACCGGAAAACCAGCCTGGGAAGATCACGGTTTC 651
Query 698 GACTCGCTGAGTCGGATCGGGTTCTCTAACGATTTGCCTTTTATTCCGGTGGGGTTATCG 757
||||||||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||
Sbjct 652 GACTCGCTGAGTCGGATCGGGTTTTCTAACGAGTTGCCATTTATTCCGGCGGGATTATCG 711
Query 758 GAACTCGGGAGAGATTTCTTAGAGAAATGCTTGAAACGTGATCGGAGTCAGCGTTGGAGC 817
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 712 GAACTCGGGAGAGATTTCTTGGAGAAATGCTTGAAACGTGATCGGAGTCAGCGGTGGAGT 771
Query 818 TGTGATCAGCTCTTGCAGCATCCGTTTCTGTGTCAAGATCATCATGACTCGTTCTTCACT 877
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 772 TGTGATCAGCTTTTGCAGCATCCGTTTCTGTTTCAAGATCATCATGACTCGTTCTTGACC 831
Query 878 GAGTCGTCTCCGCGTTGTGTTCTTGACTGGGTCAACTCGGAGTTTGACGAAGAAGAAGAG 937
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 832 GAGTCGTCTCCGCGTTGCGTTCTTGACTGGGTCAACTCGGAGTTCGACGAAGAAGAAGAG 891
Query 938 AGCGACGAATGGAGACCAGAATCCATGGTTTCGGCGATGGCAAGGATAAGTAAATTAGCT 997
||| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 892 AGCAACGAGTGGAGACCAGAATCCATGGTTTCAGCAATGGCAAGGATAAGTAAATTAGCG 951
Query 998 ATAACCGGAGGAGCAAATTGGGAATCTAATGGTTGGACTGAGGTTAGAGACACTTCCGAA 1057
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATAACCGGAGGGGCAAATTGGGAATCTAATGGTTGGACTGAGGTTAGAGACACTTCCGAA 1011
Query 1058 GAGTCAGAGGCAAAAAAGGAAGTTCTTGTTTCTCCAAGGGTAGAATTGGAATCTTA-CAT 1116
||||||| ||||| ||||||||||| |||||| ||||||||||||||| || ||| ||
Sbjct 1012 GAGTCAGGGGCAATAAAGGAAGTTCCTGTTTCAACAAGGGTAGAATTGGGAT-TTAACAC 1070
Query 1117 ATCATTGGAGTCGTCAAGCGATGATTCCGTAAGACAACCGAGGAA-TGAAGAGTCGGCGA 1175
||||| ||||||||| |||||||||| ||||||||| ||| | || ||||||||||||||
Sbjct 1071 ATCATCGGAGTCGTCGAGCGATGATTTCGTAAGACAGCCG-GAAAATGAAGAGTCGGCGA 1129
Query 1176 CGGAGTTGGCGTCGGC-AGTGACGTGTGAAGCAATATTGTTGGTGATGATATTGGTGGTA 1234
|||||||||||| ||| | |||||||||||| ||| | || || | |||||||
Sbjct 1130 CGGAGTTGGCGTTGGCTA-TGACGTGTGAAGTAAT-T-GT-----AT--T---GGTGGTA 1176
Query 1235 GAGAATATTCAAATATATGCCACGTTTTACACCA 1268
||||||||||| ||||||||||||||||||||||
Sbjct 1177 GAGAATATTCAGATATATGCCACGTTTTACACCA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5