BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30360.1 Length=1856 Score E Sequences producing significant alignments: (Bits) Value Ahg481948 jgi|Araly1|481948|fgenesh2_kg.4__1008__AT2G30360.1 2176 0.0 > Ahg481948 jgi|Araly1|481948|fgenesh2_kg.4__1008__AT2G30360.1 Length=1758 Score = 2176 bits (1178), Expect = 0.0 Identities = 1462/1594 (92%), Gaps = 39/1594 (2%) Strand=Plus/Plus Query 9 ATTATTCTATCGAACTTATC-TTTTT---AAAAGCTTCCGCGTTACGCCATCACTTCTCC 64 |||||||||| ||||||||| ||||| ||||||||||||||||| || | | |||||| Sbjct 1 ATTATTCTATTGAACTTATCTTTTTTAAAAAAAGCTTCCGCGTTACACCTTAAATTCTCC 60 Query 65 ACCATTTAAATACCTAAACCACTTTCTTTCAAATTTCTTATTCCATAAAAAGTAAATTCA 124 ||||||||||||||| |||||| ||| | ||| |||||||||||||||||| ||| || Sbjct 61 ACCATTTAAATACCT-AACCAC-TTC--T-AAAATTCTTATTCCATAAAAAGCAAACACA 115 Query 125 --CAACAAAACCaaaaaaaaa-aaaaGAGAAGAAGAATTAGCTTACGTGTTCATCACATC 181 |||||||| ||||||||| | || |||||||||||| |||||||||||| ||||||| Sbjct 116 CCCAACAAAA--AAAAAAAAAGACAA-AGAAGAAGAATTCGCTTACGTGTTCTTCACATC 172 Query 182 TGCATTACGCGCAAACGAAA-CAGATTCAAATTCTCCGGCGAAGTTTTCTTATTCATCAA 240 || ||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| Sbjct 173 TGAATTACGCGCAAACGAAATCAGATTCAAATTCTCCGGCGAAGTCTTCCAATTCATCAA 232 Query 241 TCAATCTCTGG-ATTCATCAATCATGCCAGAGATCGAGATT-GCCGCCGGCAGCGGCGAC 298 ||||||||||| || | ||||||||||||||||||||||| || || || |||||||| Sbjct 233 TCAATCTCTGGCCTT-AACAATCATGCCAGAGATCGAGATTATCC-CCTGCGGCGGCGAC 290 Query 299 AACAACGACGCCTTATTCGGTAAATATGAGCTCGGAAAGCTTCTCGGATGCGGCGCATTC 358 ||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 291 AACAACGCCGCCTTATTCGGCAAATACGAGCTCGGAAAGCTTCTCGGGTGCGGCGCATTC 350 Query 359 GCCAAAGTCTTCCACGCACGTGATCGTCGTACCGGCCAAAGCGTCGCCGTGAAAATCCTC 418 || |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 351 GCTAAAGTCTTCCACGCACGTGATCGTCGTAACGGTCAAAGCGTCGCCGTGAAAATCCTC 410 Query 419 AACAAGAAAAAACTCCTCACAAATCCAGCTCTAGCCAACAACATCAAACGCGAGATCTCA 478 |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 411 AACAAGAAGAAACTCCTAACAAATCCAGCTCTCGCCAACAACATCAAACGCGAGATCTCA 470 Query 479 ATCATGAGAAGATTATCTCATCCAAACATCGTCAAG-CTCCACGAAGTAATGGCGACAAA 537 ||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct 471 ATCATGAGACGATTATCACATCCAAACATCGT-TAGACTCCACGAAGTAATGGCGACAAA 529 Query 538 ATCAAAGATCTTCTTCGCAATGGAGTTTGTTAAAGGAGGAGAACTATTCAACAAAATCTC 597 | |||||||||||||| |||||||||||||||||||| || |||||||||||||||| Sbjct 530 GGCGAAGATCTTCTTCGCGATGGAGTTTGTTAAAGGAGGTGAGTTATTCAACAAAATCTC 589 Query 598 AAAACATGGACGTCTTAGCGAAGATTTAAGCCGGAGATATTTCCAGCAACTGATCTCCGC 657 |||||||||||||||||||||||| | ||||| ||||| ||||| ||| | |||||||| Sbjct 590 AAAACATGGACGTCTTAGCGAAGAACTCAGCCGTAGATACTTCCAACAATTAATCTCCGC 649 Query 658 CGTTGGTTATTGCCACGCTCGCGGTGTTTACCACCGCGATCTCAAACCAGAGAATCTATT 717 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 650 TGTTGGTTATTGTCACGCTCGCGGTGTTTACCACCGCGATCTCAAACCGGAGAATCTGTT 709 Query 718 AATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCTAAGCGCGTTAACGGATCA 777 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 710 AATAGACGAAAACGGAAACTTAAAAGTTTCCGATTTCGGTCTTAGCGCGTTAACGGATCA 769 Query 778 GATCCGACCCGATGGGTTGTTACATACCTTGTGTGGTACTCCGGCGTACGTTGCGCCGGA 837 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 770 GATCCGACCCGACGGGTTATTACATACCTTGTGTGGTACTCCGGCGTACGTTGCGCCGGA 829 Query 838 GATTCTATCTAAAAAAGGATATGAAGGTGCTAAAGTTGATGTATGGTCTTGTGGAATCGT 897 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 830 GATTCTATCTAAAAAGGGATATGAAGGTGCTAAAGTTGATGTATGGTCTTGCGGAATCGT 889 Query 898 CTTGTTCGTTCTCGTCGCCGGTTATTTACCGTTTAACGATCCGAATGTGATGAATATGTA 957 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 890 CTTGTTCGTTCTCGCCGCCGGTTATTTACCGTTTAACGATCCGAATCTGATGAATATGTA 949 Query 958 TAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGATGTCTCCAGATCTGAAACG 1017 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 950 TAAGAAGATTTATAAAGGAGAGTATCGTTTTCCTCGTTGGATGTCTCAAGATCTGAAACG 1009 Query 1018 ATTCGTTTCTCGTCTTTTAGATATTAATCCTGAGACTAGAATCACCATTGATGAGATTTT 1077 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 TTTCATTTCTCGTCTTCTAGATATTAATCCTGAGACTAGAATCACCATTGATGAGATTTT 1069 Query 1078 GAAAGATCCTTGGTTTGTTAGAGGAGGTTTTAAACAGATCAAGTTCCACGATGACGAGAT 1137 |||||||||||||||||||| ||||||| |||| || ||||||||||| ||||||||| Sbjct 1070 GAAAGATCCTTGGTTTGTTAAAGGAGGTCTTAAGCAAATCAAGTTCCA---TGACGAGAT 1126 Query 1138 CGAAGATC---AGAAAG-TG-GAATCGTC-ACTAGAAGCTGTGAAGAGTTTAAACGCGTT 1191 || ||| |||||| | ||| || | |||| |||||||||||||||||||||| Sbjct 1127 TGATGATTGTGAGAAAGATCAGAAA-GTGGA--AGAATCTGTGAAGAGTTTAAACGCGTT 1183 Query 1192 TGATTTGATTTCTTACTCGTCGGGATTGGATTTGTCGGGATTGTTTGCTGGTTGTAGTAA 1251 ||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| Sbjct 1184 TGATTTGATTTCTTACTCGTCGGGATTAGATTTGTCGGGATTGTTTGATGGCTGTAGTAA 1243 Query 1252 TTCGAGT-GGTGAATCGGAGAGGTTTTTATCGGAAAAGTCGCCGGAGATGTTGGCggagg 1310 |||| || || || || ||||||||||||||||| ||||||||||||| |||||||||| Sbjct 1244 TTCG-GTTGGGGAGTCAGAGAGGTTTTTATCGGAGAAGTCGCCGGAGAAATTGGCGGAGG 1302 Query 1311 aagtggaggggtttgcgagagaggagaatctgaggatgaagaagaagaaggaggaagagT 1370 |||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 1303 AAGTGGAGAGGTTTGCGAGAGAGGAGAATTTGAGGATGAAGAAGAAGAAGGAAGAAGAGT 1362 Query 1371 ATGGGTTTGAGATGGAGGGGCAAAATGGGAAATTTGGTATCGGGATTTGTATTTCGCGGT 1430 |||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1363 ATGGGTTTGAAATGGAAGGGCAAAATGGGAAATTTGTTATCGGGATTTGTATTTCGCGGT 1422 Query 1431 TGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTGGTGATGGTGATTGTTATA 1490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1423 TGAATGATTTGCTTGTGGTGGTGGAGGCACGGCGGAGAGGTGGTGATGGTGATTGTTATA 1482 Query 1491 AGGAGATGTGGAATGGTAAACTCAGGGTTCAACTTATTCGCGTTTGCGATCAGACGTCGT 1550 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1483 AGGAGATGTGGAATGATAAACTCAGGGTTCAACTTATTCGCGTTTGCGATCAGACGTCGT 1542 Query 1551 CAACAAACGCGGCTATTTAAAAGAACGCTATGAA 1584 ||| | ||| | ||||||||||||||||||||| Sbjct 1543 CAA-A--CGCAGTTATTTAAAAGAACGCTATGAA 1573 Score = 226 bits (122), Expect = 5e-58 Identities = 146/157 (93%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 1695 AATGTATGTATTTAAATACTGTACCAAATTGTAGGTATCTATTTTGTGCTTTTTGAT-CA 1753 ||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | Sbjct 1605 AATATATGTATTTAAATACAGTACCAAATTGTAGGCATCTATTTTGTGCTTTTTGATAAA 1664 Query 1754 ATGTGTTACTATGTACAACAACAAGTCTAAAATTGCATTTGTAGATACTTCACTCTTTTG 1813 |||| | ||||||||| || |||||| ||||||||||||||||||||||| ||||||||| Sbjct 1665 ATGTATAACTATGTAC-AC-ACAAGTATAAAATTGCATTTGTAGATACTT-ACTCTTTTG 1721 Query 1814 TATAATGTAGAAAATGTTCTTCTATTTATAGTTTGGA 1850 ||||||||||||||||||||||||||||||||||||| Sbjct 1722 TATAATGTAGAAAATGTTCTTCTATTTATAGTTTGGA 1758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69705148350 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5