BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30424.1
Length=303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933543 jgi|Araly1|933543|scaffold_401531.1 446 5e-125
Ahg933542 jgi|Araly1|933542|scaffold_401530.1 248 2e-65
Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3 243 7e-64
Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350 174 3e-43
> Ahg933543 jgi|Araly1|933543|scaffold_401531.1
Length=348
Score = 446 bits (241), Expect = 5e-125
Identities = 286/307 (93%), Gaps = 5/307 (2%)
Strand=Plus/Plus
Query 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACTCTA 60
||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 23 ATGGATAACACCAACCGTCTTCGTCTCCTTCGCAGTCCTAAGCAAACCAAGTTCACTCTA 82
Query 61 GGGGA-TACCGCAGAGGTAAATAGTGTGAAATGGGAGTTTATCAATATGACGGAACAAGA 119
| || | ||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 83 CGTGACT-CCGAAGAGGTAAGTAGTGTGAAATGGGAGTTTACCAATATGACGGAACAAGA 141
Query 120 AGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 AGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGG 201
Query 180 AAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAACTGTGA 239
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 202 AAGAGTGGTAGGACGAGAGGCAAAAGACATAGAGAGATACTGGATTATGAGAAACTGTGA 261
Query 240 TCATTGTTCCCACAAACGACGCCGA-G-T-CCACAAATTTTACCGTTTCTCTATTTCTCC 296
||||||||| ||||||||||||| | | ||||||| ||| ||||||||||||||||||
Sbjct 262 CCATTGTTCCAACAAACGACGCCGCCGATTCCACAAACTTTCCCGTTTCTCTATTTCTCC 321
Query 297 TCCTTAA 303
|||||||
Sbjct 322 TCCTTAA 328
> Ahg933542 jgi|Araly1|933542|scaffold_401530.1
Length=351
Score = 248 bits (134), Expect = 2e-65
Identities = 225/268 (84%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACT--C 58
|||||||| |||||||||||||||| | ||||||| || |||| |||||||||||
Sbjct 26 ATGGATAATACCAACCGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGA 85
Query 59 TAG-GGGAT-A--CCGCAGAGGTAAATAGTGT-GAAATGGGAGTTTATCAATATGACGGA 113
| | | || | ||| ||| || | ||| | | ||||||||||||||| |||||| ||
Sbjct 86 TCGCGACATGACTCCGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGA 144
Query 114 ACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAAT 173
|||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 145 ACAAGAGGAAGATCTCATCTCTCGAATGCACAGACTTGTCGGTGATAGGTGGGATTTAAT 204
Query 174 AGCAGGAAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAA 233
||||||||||||||| |||||| ||||||| || || || |||| |||||||||||||||
Sbjct 205 AGCAGGAAGAGTGGTCGGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAA 264
Query 234 CTGTGATCATTGT-TCCCACAAACGACG 260
|| ||| | || | ||||||||||||||
Sbjct 265 CTCTGA-CTTTTTCTCCCACAAACGACG 291
> Ahg888011 jgi|Araly1|888011|Al_scaffold_0136_3
Length=306
Score = 243 bits (131), Expect = 7e-64
Identities = 224/268 (84%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 1 ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACT--C 58
|||||||| |||||||||||||||| | ||||||| || |||| |||||||||||
Sbjct 1 ATGGATAATACCAACCGTCTTCGTCGCGGTCGCAGTTTTAGGCAAACCAAGTTCACTAGA 60
Query 59 TAG-GGGAT-A--CCGCAGAGGTAAATAGTGT-GAAATGGGAGTTTATCAATATGACGGA 113
| | | || | ||| ||| || | ||| | | ||||||||||||||| |||||| ||
Sbjct 61 TCGCGACATGACTCCGAAGAAGTGAGTAGCATCG-AATGGGAGTTTATCAGTATGACCGA 119
Query 114 ACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAAT 173
|||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 120 ACAAGAGGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAAT 179
Query 174 AGCAGGAAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAA 233
||||||||||||||| |||||| ||||||| || || || |||| |||||||||||||||
Sbjct 180 AGCAGGAAGAGTGGTCGGACGAAAGGCAAATGAGATTGAGAGATTTTGGATTATGAGAAA 239
Query 234 CTGTGATCATTGT-TCCCACAAACGACG 260
|| ||| | || | ||||||||||||||
Sbjct 240 CTCTGA-CTTTTTCTCCCACAAACGACG 266
> Ahg357563 jgi|Araly1|357563|fgenesh1_pg.C_scaffold_8001350
Length=321
Score = 174 bits (94), Expect = 3e-43
Identities = 133/152 (88%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 89 AATGGGAGTTTATCAATATGACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGAC 148
|||||||||||||||| ||| | ||||||||||||||||||||||| |||||| ||||||
Sbjct 80 AATGGGAGTTTATCAACATGTCTGAACAAGAAGAAGATCTCATCTTCCGAATGTACAGAC 139
Query 149 TTGTTGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGG-TAGGACGAGAGGCAAAGGAC 207
|||| |||||||||||||||||||||||||||||||| | ||| || | || ||||
Sbjct 140 TTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTTCCT-GGAAGACAACCAGAGGAG 198
Query 208 ATAGAAAGATATTGGATTATGAGAAACTGTGA 239
||||| ||||||||||| ||||||||| ||||
Sbjct 199 ATAGAGAGATATTGGATAATGAGAAACAGTGA 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10645409331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5