BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30490.1 Length=1803 Score E Sequences producing significant alignments: (Bits) Value Ahg481961 jgi|Araly1|481961|fgenesh2_kg.4__1021__AT2G30490.1 2615 0.0 > Ahg481961 jgi|Araly1|481961|fgenesh2_kg.4__1021__AT2G30490.1 Length=1780 Score = 2615 bits (1416), Expect = 0.0 Identities = 1680/1805 (93%), Gaps = 28/1805 (2%) Strand=Plus/Plus Query 2 TCAGCAGCTTCTTCTGCTTTCAATTACTCTCGCCGACGATTTTCTCACCGGaaaaaaaCA 61 ||||||||||||||||||||||| | | ||||||||||||||||||||||| ||||| Sbjct 1 TCAGCAGCTTCTTCTGCTTTCAA-T-CACTCGCCGACGATTTTCTCACCGG--AAAAATT 56 Query 62 ATATCATTGCGGATACACAAACTATAATGGACCTCCTCTTGCTGGAGAAGTCTTTAATCG 121 | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 57 A-ATCATTGCGGATACACAAACTATAATGGACCTTCTCTTGTTGGAGAAGTCTTTAATCG 115 Query 122 CCGTCTTCGTGGCGGTGATTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 181 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 116 CCGTCTTCGTGGCGGTGGTTCTCGCCACGGTGATTTCAAAGCTCCGCGGCAAGAAATTGA 175 Query 182 AGCTACCTCCAGGTCCTATACCAATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 241 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 176 AGCTACCTCCAGGTCCTATGCCGATTCCGATCTTCGGAAACTGGCTTCAAGTCGGAGATG 235 Query 242 ATCTCAACCACCGTAATCTCGTCGATTACGCTAAGAAATTCGGCGATCTCTTCCTCCTCC 301 |||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct 236 ATCTTAACCACCGTAATCTCATCGATTACGCTAAAAAATTTGGCGATCTCTTCCTCCTCA 295 Query 302 GTATGGGTCAGCGAAACCTAGTCGTCGTCTCCTCACCGGATCTAAC-AAAGGAAGTGCTC 360 | ||||||||||||||||||||||||||||| ||||||||||| || ||| ||||| ||| Sbjct 296 GGATGGGTCAGCGAAACCTAGTCGTCGTCTCTTCACCGGATCTGACTAAA-GAAGTACTC 354 Query 361 CTCACTCAAGGCGTTGAGTTTGGATCCAGAACGAGAAACGTCGTGTTCGACATTTTCACC 420 | ||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 355 CACACACAAGGTGTTGAGTTTGGATCTAGAACGAGAAACATCGTGTTCGACATTTTCACC 414 Query 421 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGCGAGCATTGGAGGAAGATGAGAAGA 480 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 415 GGGAAAGGTCAAGATATGGTGTTCACTGTTTACGGAGAGCATTGGAGGAAGATGAGAAGG 474 Query 481 ATCATGACGGTTCCTTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAG 540 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 ATCATGACGGTTCCGTTCTTCACCAACAAAGTTGTTCAACAGAATCGTGAAGGTTGGGAA 534 Query 541 TTTGAAGCAGCTAGTGTTGTTGAAGATGTTAAGAAGAATCCAGATTCTGCTACGAAAGGA 600 || |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 535 TTCGAAGCAGCGAGTGTTGTTGAAGATGTGAAGAAGAATCCAGATTCTGCTACTAAAGGA 594 Query 601 ATCGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 660 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 ATTGTGTTGAGGAAACGTTTGCAATTGATGATGTATAACAATATGTTCCGTATCATGTTC 654 Query 661 GATAGAAGATTTGAGAGTGAGGATGATCCTCTTTTCCTTAGGCTTAAGGCTTTGAATGGT 720 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 655 GATAGAAGATTTGAGAGTGAAGATGATCCTCTTTTTCTTAGGCTTAAGGCTTTGAATGGT 714 Query 721 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTATAACTATGGAGATTTCATTCCTATCCTT 780 |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 715 GAGAGAAGTCGATTAGCTCAGAGCTTTGAGTACAACTATGGAGATTTCATCCCTATCCTT 774 Query 781 AGACCATTCCTCAGAGGCTATTTGAAGATTTGTCAAGATGTGAAAGATCGAAGAATCGCT 840 ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 775 AGACCATTCCTTAGAGGTTATTTGAAGATTTGCCAAGATGTGAAGGATCGAAGAATTGCT 834 Query 841 CTTTTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 900 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 CTATTCAAGAAGTACTTTGTTGATGAGAGGAAGCAAATTGCGAGTTCTAAGCCTACAGGT 894 Query 901 AGTGAAGGATTGAAATGTGCCATTGATCACATCCTTGAAGCTGAGCAGAAGGGAGAAATC 960 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 895 AGTGAAGGATTGAAATGTGCCATTGATCATATCCTTGAAGCTGAACAGAAGGGAGAAATC 954 Query 961 AACGAGGACAATGTTCTTTACATCGTCGAGAACATCAATGTCGCCGCGATTGAGACAACA 1020 || |||||||| |||||||||||||||||||||||||| || || ||||||||||||||| Sbjct 955 AATGAGGACAACGTTCTTTACATCGTCGAGAACATCAACGTTGCTGCGATTGAGACAACA 1014 Query 1021 TTGTGGTCTATCGAGTGGGGAATTGCAGAGCTAGTGAACCATCCTGAAATCCAGAGTAAG 1080 |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1015 TTGTGGTCAATCGAATGGGGAATTGCGGAGCTGGTGAACCATCCTGAAATCCAGAGTAAG 1074 Query 1081 CTAAGGAACGAACTCGACACAGTTCTTGGACCGGGTGTGCAAGTCACCGAGCCTGATCTT 1140 |||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||| ||| Sbjct 1075 CTAAGGAATGAAATCGACACGGTTCTTGGACCGGGTGTGCAAGTGACTGAGCCTGAGCTT 1134 Query 1141 CACAAACTTCCATACCTTCAAGCTGTGGTTAAGGAGACTCTTCGTCTGAGAATGGCGATT 1200 ||||| ||||||||||||||||| ||| | |||||||| |||||||| |||||||||||| Sbjct 1135 CACAAGCTTCCATACCTTCAAGCAGTGATCAAGGAGACACTTCGTCTAAGAATGGCGATT 1194 Query 1201 CCTCTCCTCGTGCCTCACATGAACCTCCATGATGCGAAGCTCGCTGGCTACGATATCCCA 1260 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 1195 CCTCTCCTCGTGCCTCACATGAACCTCCACGACGCCAAGCTCGCTGGCTACGATATCCCA 1254 Query 1261 GCAGAAAGCAAAATCCTTGTTAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1320 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1255 GCAGAAAGCAAAATCCTTGTCAATGCTTGGTGGCTAGCAAACAACCCCAACAGCTGGAAG 1314 Query 1321 AAGCCTGAAGAGTTTAGACCAGAGAGGTTCTTTGAAGAAGAATCGCACGTGGAAGCTAAC 1380 || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 1315 AAACCTGAAGAGTTTAGACCAGAGAGGTTCTTGGAAGAAGAAGCGCACGTGGAAGCGAAT 1374 Query 1381 GGTAATGACTTCAGGTATGTGCCATTTGGTGTTGGACGTCGAAGCTGTCCCGGGATTATA 1440 |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1375 GGTAATGACTTCAGGTTTGTGCCGTTTGGTGTTGGACGTAGAAGCTGTCCCGGGATTATA 1434 Query 1441 TTGGCATTGCCTATTTTGGGGATCACCATTGGTAGGATGGTCCAGAACTTCGAGCTTCTT 1500 ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct 1435 TTGGCATTGCCCATTTTGGGAATCACCATTGGAAGGATGGTCCAAAACTTCGAGCTGCTT 1494 Query 1501 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 CCTCCTCCAGGACAGTCTAAAGTGGATACTAGTGAGAAAGGTGGACAATTCAGCTTGCAC 1554 Query 1561 ATCCTTAACCACTCCATAATCGTTATGAAACCAAGGAACTGTTAAACTTTCTGCACaaaa 1620 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 1555 ATCCTTAACCACTCCACAATCGTTATGAAACCAAGGAACTTTTAAATTTTCTGCA-AAAA 1613 Query 1621 aaaaGGATGAAGATGACTTTA-TAAATGTTTGTGAAATCTGTTGAAATATTCCCTTGTTT 1679 | ||| | | | || | | |||||||||||||||||||| ||||||| ||||| Sbjct 1614 A------TGACTTT-A-TATAATGA-TGTTTGTGAAATCTGTTGAA-TATTCCCATGTTT 1663 Query 1680 TGCTTTTGTGAGATGTTTTTGTGTAAAATGTCTTTAAATGGTTCGTTCTA-CGATTGCAA 1738 ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| Sbjct 1664 TGCTTTTGTGAGATGTTTT-GTGTAAAATGTCTTTAAATGGCTCGTTCTATCGATTGCAA 1722 Query 1739 TAATAATTAGTGGTGCTCATTGTTTTGGATGGATCAATGTTATACTTATATCATTTGAAA 1798 |||| | |||||||| |||||||||| ||||| || || || || |||||||| ||| Sbjct 1723 TAAT--T-AGTGGTGCCCATTGTTTTGAATGGA-CATTG--ATG-TTCTATCATTTCAAA 1775 Query 1799 ATCTC 1803 ||||| Sbjct 1776 ATCTC 1780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67686365365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5