BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30520.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481966 jgi|Araly1|481966|fgenesh2_kg.4__1026__AT2G30520.1 2924 0.0
> Ahg481966 jgi|Araly1|481966|fgenesh2_kg.4__1026__AT2G30520.1
Length=1940
Score = 2924 bits (1583), Expect = 0.0
Identities = 1831/1951 (94%), Gaps = 16/1951 (1%)
Strand=Plus/Plus
Query 1 ATCTCCTTCAATAGAGAACCaaaaaaaaTGGCAACAGAAGGAAAAAACCCCATCAACATG 60
||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATCTCCTTCAATACATAACCAAAAAAAATGGCGACAGAAGGAAAAAACCCCATCAACATG 60
Query 61 AACTCTATGTCTTCAAGTCTTGCAAGAACCGGTCAATGGGTTTTTTCTCAAGATATTCCG 120
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACACTATGTCTTCGAGTCTTGCAAGAACCGGTCAATGGGTTTTTTCTCAAGATATTCCG 120
Query 121 ACCGATGTTGTTGTTGAAGTCGGAGAAGCCAATTTCTCTCTTCATAAGTTCATGTTAGTG 180
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGATGTTATAGTTGAAGTCGGAGAAGCCAATTTCTCTCTTCATAAGTTCATGTTAGTG 180
Query 181 GCTAAGAGTAACTACATAAGGAAGCTAATAATGGAATCCAAAGATAGCGACGTGACAAGA 240
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 GCGAAGAGCAACTACATAAGGAAGCTAATAATGGAATCCAAAGACAGCGACGTGACGAGA 240
Query 241 ATCAATCTCTCGGATATACCCGGAGGTCCTGAGATATTTGAGAAAGCTGCCAAGTTCTGT 300
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGATCTCTCAGATATCCCCGGAGGTCCTGAGATATTTGAGAAAGCTGCCAAGTTCTGT 300
Query 301 TACGGTGTTAACTTCGAGATCACCGTTCAGAACGTGGCGGCTCTTCATTGCGCAGCCGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 301 TACGGTGTTAACTTCGAGATCACCGTTCAGAACGTGGCGGCTCTTCATTGCGCCGCAGAG 360
Query 361 TTTCTTCAGATGACCGATAAGTACTGCGACAACAACCTTGCTGGTCGGACACAAGACTTC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCTTCAGATGACCGACAAGTACTGCGACAACAACCTTGCTGGTCGGACACAAGACTTC 420
Query 421 CTTTCTCAAGTAGCTCTCTCTAGCCTCTCTGGAGCTATCGTTGTCCTCAAGTCTTGCGAG 480
||||| || || ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 421 CTTTCACAGGTGGCTCTCTCTAGCCTCTCTGGAGCCATTGTCGTCCTCAAGTCTTGCGAG 480
Query 481 ATTCTCCTTCCTATTTCTCGTGATCTTGGTA-TTGTCCGCCGTTGTGTCGACGTCGTCGG 539
||||||||||||||||||||||||||||| | |||| |||||||| ||||| ||||| ||
Sbjct 481 ATTCTCCTTCCTATTTCTCGTGATCTTGG-ACTTGTACGCCGTTGCGTCGATGTCGTTGG 539
Query 540 TGCTAAGGCTTGCAACGAGGCAATGTTTCCATGTCGAACACCACCAAATTGGTGGACAGA 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TGCTAAGGCTTGCAACGAGGCAATGTTTCCATGTCGAACACCACCAAACTGGTGGACAGA 599
Query 600 GGAACTCTGTATCTTAGACGTCGACTTCTTCTCCGATGTCGTATCTTCAATGAAGCAGAG 659
||| || |||||||||||||||||||||||| |||| || |||||||| |||||||||||
Sbjct 600 GGAGCTTTGTATCTTAGACGTCGACTTCTTCGCCGACGTTGTATCTTCCATGAAGCAGAG 659
Query 660 AGGTGTCAAACCTTCTTCCTTAGCCTCTGCAATCATCACCTACACAGAGAAATCCTTAAG 719
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 AGGAGTCAAACCTTCTTCCTTAGCCTCTGCAATCATCACCTACACTGAGAAATCCTTAAG 719
Query 720 AGATCTCGTCAGAGACCATTCAGGCAGAGGAGTCAAATATTCCGATCCCGGAGATAACGA 779
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 720 AGATCTCGTCAGAGACCATTCCGGCAGAGGAGTCAAGTTTTCCGATCCCGGAGATAACGA 779
Query 780 ATCCGACGAAAGATCCCAACAGAGAGATCTTGTTCAATCTATCGTCTCTCTTTTACCTTC 839
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCCGACGAAAGATCGCAACAGAGAGATCTTGTTCAATCTATCGTCTCTCTTTTACCTTC 839
Query 840 AGACAAAGGGCTGTTCCC-AGTCAATTTCCTCTGTTCTCTCCTCCGTTGCGCGGTCTTCT 898
||||||||| || ||||| | ||||||||||||||||||| |||||||| || |||||||
Sbjct 840 AGACAAAGGACTTTTCCCCA-TCAATTTCCTCTGTTCTCTTCTCCGTTGTGCTGTCTTCT 898
Query 899 TAGACACTTCCTTGACCTGCAAGAACGAGCTCGAGAAGCGAATCTCAGTCGTTCTAGAAC 958
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 899 TGGACACTTCCTTGACCTGCAAGAATGAGCTCGAGAAGCGAATCTCGGTCGTTCTCGAAC 958
Query 959 ACGTCTCCGTCGACGATCTTTTGATCCCGTCTTTCACCTACGACGGCGAACGGTTACTAG 1018
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 959 ACGTCTCTGTCGACGATCTTTTGATCCCGTCTTTCACCTATGACGGCGAACGGTTACTAG 1018
Query 1019 ATCTCGATAGTGTCAGAAGAATCATCTCTGCTTTCGTGGAAAAAGAGAAAAACGTTGGTG 1078
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1019 ATCTCGATAGTGTCAGAAGAATCATCTCTGCTTTCGTTGAAAAAGAGAAAAACGTCGGTG 1078
Query 1079 TTTTCAACGGTGGAGACTTCAACAGAGGAGTCTGCTCTGTTTCACTACAAAGAGTAGCTA 1138
||||||| || |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1079 TTTTCAATGGCGGAGACTTCAACAGAGGAGTCTGCTCTGTTTCGCTTCAAAGAGTAGCTA 1138
Query 1139 AAACAGTTGATTCTTACTTAGCGGAGATCGCTACTTACGGAGACCTAACAATCTCCAAAT 1198
|||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||
Sbjct 1139 AAACCGTTGATTCTTATTTAGCGGAGATAGCTACTTACGGAGAGCTAACGATCTCAAAAT 1198
Query 1199 TCAACGCGATTGCGAATCTTGTCCCGAAATCCGCTAGAAAATCAGACGACGATCTCTACA 1258
|||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCAACGCGATAGCTAATCTTGTTCCGAAATCCGCTAGAAAATCAGACGACGATCTCTACA 1258
Query 1259 GAGCTATAGACATCTTCTTGAAAGCTCATCCGAATCTAGACGAGATCGAAAGGGAAAAAG 1318
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1259 GAGCGATAGACATCTTCTTGAAAGCTCATCCGAATCTAGACGAGATCGAAAGAGAGAAAG 1318
Query 1319 TGTGTAGCTCAATGGATCCCTTAAAGCTTTCTTACGACGCACGTCTTCACGCTTCACAGA 1378
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 TATGTAGCTCAATGGATCCTTTAAAGCTTTCTTACGACGCACGTCTCCACGCTTCACAGA 1378
Query 1379 ACAAGAGATTACCAGTAAACATTGTTCTTCACGCTCTTTACTACGATCAGTTAAAGCTAA 1438
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACAAGAGATTACCGGTGAACATCGTTCTTCACGCTCTTTACTACGATCAGTTAAAGCTAA 1438
Query 1439 GAAGTGGAGTCGCAGAACAAGAAGAAAGAGCAGTAGTTGTTCTCCCTGAAGCTTTAAAGA 1498
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAAGCGGAGTCGAAGAACAAGAAGAAAGAGCAGTAGTTGTTCTCCCTGAAGCTTTAAAGA 1498
Query 1499 CACGTAGCCAACTGCAAGCTGATACTACGTTAGCTAAAGAAAACGAAGCGTTGAGAAGTG 1558
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CACGTAGCCAGCTTCAAGCTGATACTACGTTAGCTAAAGAAAACGAAGCGTTGAGAAGTG 1558
Query 1559 AGCTGATGAAGATGAAAATGTATGTTTCGGATATGCAGAAGAATAAGAACGGTGCAGGAG 1618
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 1559 AGCTGATGAAGATGAAGATGTATGTTTCGGATATGCAGAAGAATAAGAATGGCGCAGGAG 1618
Query 1619 CTTCTTCTTCGAATTCGTCGTCGTTGGTGAGTAGTAAGAAGAGCAAACATACTTTCTTCT 1678
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1619 CTTCTTCTTCGAATTCGTCGTCGTTGGTGAGTACTAAGAAGAACAAACATACTTTCTTCT 1678
Query 1679 CTTCTGTTTCCAAGAAACTTGGGAAGTTAAATCCGTTTAAAAATGGGTCTAAGGATACTT 1738
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CTTCTGTTTCAAAGAAACTTGGGAAGTTAAATCCGTTTAAAAATGGGTCTAAGGATACTT 1738
Query 1739 CGCACATAGATGAAGATCTTGGAGGTGTTGACATTACTAAGCCAAGGAGACGAAGATTCT 1798
|| |||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 1739 CGAACATAGATGAAGATCTTGCAGGTGTTGATATTACTAAACCAAGGAGACGAAGATTCT 1798
Query 1799 CAATCTCTTAAAAGAAAACGTTTGATC-TAAGTGCTTT-TGTG-TGTTGTGTATAACTCT 1855
||||||| | || ||||| |||||||| | |||| | | || | | |||||||||||||
Sbjct 1799 CAATCTCATGAA-GAAAATGTTTGATCATTAGTG-TGTGTGGGCTTTTGTGTATAACTCC 1856
Query 1856 TTTAGACTAGTGTGCTTATTGTTCCCTTCTTGATGCGTGAtttttttttttGGGTGTGTG 1915
||||||||||||||||| || || || | ||||||||||||||||| |||||||||
Sbjct 1857 TTTAGACTAGTGTGCTTTTT-TTA--TT-T-GATGCGTGATTTTTTTTG--GGGTGTGTG 1909
Query 1916 TGTTTATTGTTTAATGAGCTTGGTTAATAAA 1946
|||||||||||||||||| |||| |||||||
Sbjct 1910 TGTTTATTGTTTAATGAGATTGGATAATAAA 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5