BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30540.1
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933555 jgi|Araly1|933555|scaffold_401543.1 551 3e-156
Ahg952138 jgi|Araly1|952138|scaffold_3900004.1 189 2e-47
Ahg935776 jgi|Araly1|935776|scaffold_403764.1 189 2e-47
> Ahg933555 jgi|Araly1|933555|scaffold_401543.1
Length=349
Score = 551 bits (298), Expect = 3e-156
Identities = 332/349 (95%), Gaps = 0/349 (0%)
Strand=Plus/Plus
Query 198 GAGACCTCCTTCAAGAAACCATGGACAAAGTTGTGAGAATGTCGTCAGAGAAAGGAGTGG 257
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GAGACTTCCTTCAAGAAACCATGGACAAAGTTGTGAGAATGTCGTCAGACAAAGGAGTGG 60
Query 258 TTATTTTCAGCAAGAGCTCGTGTTGCATGTCCTATGCGGTCCAAGTACTTTTCCAAGACC 317
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 61 TTATTTTCAGCAAGAGCTCGTGTTGCCTGTCCTATGCGGTCCAAGTCCTCTTCCAAGACC 120
Query 318 TTGGGGTTCACCCAACAGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGA 377
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGGGGTTCACCCAACAGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGA 180
Query 378 AAGCCCTAATGAGGTTAGGGTGTTCCACGCCGGTCCCAGCCATCTTTGTGGGTGGGAAGC 437
|||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 181 AAGCTCTAATGAGGCTCGGGTGTTCCACGCCGGTCCCAGCTATCTTTGTGGGTGGGGAGC 240
Query 438 TCATTGGTTCGACCAATGAAGTCATGTCGCTTCACTTAAGCGGCTCGCTGGTTCCGCTAG 497
||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |
Sbjct 241 TCATTGGTTCGACCAATGAAGTCATGTCGCTGCACCTAAGCGGCTCGTTGGTTCCGCTGG 300
Query 498 TTAAGCCGTTTCAAGCCAATCTATGTTAAAAAGGTGTTCTAATTTTCTA 546
||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 301 TTAAGCCGTTTCAGGCCAATCTATGTTAAAAAGGTGTTCTAACTTTCTA 349
> Ahg952138 jgi|Araly1|952138|scaffold_3900004.1
Length=350
Score = 189 bits (102), Expect = 2e-47
Identities = 218/273 (80%), Gaps = 12/273 (4%)
Strand=Plus/Plus
Query 217 CATGGACAAAGTTG-TGAGAATGTCGTCAGAGAAAGGAGTGGTTATTTTCA-GCAAGAGC 274
||||||| ||| || |||||||||||||||||||||||||||| || |||| | ||||||
Sbjct 20 CATGGAC-AAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGGTGATCTTCACG-AAGAGC 77
Query 275 TCGTGTTG-CATGTCCTATGCGGTCCA-AGTACTTTTCCAAGACCTTGGGGTTCACCCAA 332
|| ||||| | | | ||| || || || | | || |||| |||||| ||||||| ||||
Sbjct 78 TCATGTTGTC-TCTGCTACGCCGTTCAGA-TCCTGTTCCGTGACCTTAGGGTTCAACCAA 135
Query 333 C-AGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGAAAGCCCTAATGAGG 391
| | |||| |||||||| || ||||| || || |||||||||||||| || || | ||
Sbjct 136 CCA-TCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGAAGGCTCTTCTCCGG 194
Query 392 TTAGGGTGTTCCACGCCGGTCCCAGCCATCTTTGTGGGTGGGAAGCTCATTGGTTCGACC 451
| || ||||||||| |||| ||||| ||||||| || || ||||| |||| || |||
Sbjct 195 CTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGCTTGTTGGCTCCACC 254
Query 452 AATGAAGTCATGTCGCTTCAC-TTAAGCGGCTC 483
|||||||||||||| |||||| ||| | |||||
Sbjct 255 AATGAAGTCATGTCCCTTCACCTTA-GTGGCTC 286
> Ahg935776 jgi|Araly1|935776|scaffold_403764.1
Length=350
Score = 189 bits (102), Expect = 2e-47
Identities = 218/273 (80%), Gaps = 12/273 (4%)
Strand=Plus/Plus
Query 217 CATGGACAAAGTTG-TGAGAATGTCGTCAGAGAAAGGAGTGGTTATTTTCA-GCAAGAGC 274
||||||| ||| || |||||||||||||||||||||||||||| || |||| | ||||||
Sbjct 20 CATGGAC-AAGGTGATGAGAATGTCGTCAGAGAAAGGAGTGGTGATCTTCACG-AAGAGC 77
Query 275 TCGTGTTG-CATGTCCTATGCGGTCCA-AGTACTTTTCCAAGACCTTGGGGTTCACCCAA 332
|| ||||| | | | ||| || || || | | || |||| |||||| ||||||| ||||
Sbjct 78 TCATGTTGTC-TCTGCTACGCCGTTCAGA-TCCTGTTCCGTGACCTTAGGGTTCAACCAA 135
Query 333 C-AGTCCATGAGATCGATAAAGACCCTGAATGTCGTGAGATCGAGAAAGCCCTAATGAGG 391
| | |||| |||||||| || ||||| || || |||||||||||||| || || | ||
Sbjct 136 CCA-TCCACGAGATCGACAACGACCCGGACTGCCGTGAGATCGAGAAGGCTCTTCTCCGG 194
Query 392 TTAGGGTGTTCCACGCCGGTCCCAGCCATCTTTGTGGGTGGGAAGCTCATTGGTTCGACC 451
| || ||||||||| |||| ||||| ||||||| || || ||||| |||| || |||
Sbjct 195 CTCGGCTGTTCCACGGCGGTTCCAGCTGTCTTTGTCGGAGGCAAGCTTGTTGGCTCCACC 254
Query 452 AATGAAGTCATGTCGCTTCAC-TTAAGCGGCTC 483
|||||||||||||| |||||| ||| | |||||
Sbjct 255 AATGAAGTCATGTCCCTTCACCTTA-GTGGCTC 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24970510635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5