BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30670.1 Length=789 Score E Sequences producing significant alignments: (Bits) Value Ahg933572 jgi|Araly1|933572|scaffold_401560.1 1186 0.0 Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1 732 0.0 Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 195 6e-49 Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 156 3e-37 > Ahg933572 jgi|Araly1|933572|scaffold_401560.1 Length=830 Score = 1186 bits (642), Expect = 0.0 Identities = 745/794 (94%), Gaps = 10/794 (1%) Strand=Plus/Plus Query 1 ATGGATAAAAGATGGAGTCTTCAGGGTATGACCGCTCTTGTAACTGGTGGAGCCAGCGGA 60 |||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 21 ATGGATCAAAGATGGAGTCTTCAGGGTATGACTGCTCTTGTAACCGGTGGAGCCAGCGGA 80 Query 61 ATCGGGCATGCTATAGTAGAGGAGCTAGCCGGTCTTGGAGCTAGAATCTATGTATGCGAT 120 |||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 81 ATCGGGTATGCCATAGTAGAGGAGCTAGCTGGTCTTGGAGCTAGAATCCATGTATGCGAT 140 Query 121 ATATCTGAAACACTGCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTA 180 |||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||| Sbjct 141 ATATCTGAAACACTCCTCAACCAAAGTTTAAGCGAATGGGAAAAGAAACGGTTTCAAGTA 200 Query 181 AGTGGTTCAATATGTGATGTATCCTCTCATTCCGAGAGGGAAACACTTATGC-AAACAGT 239 ||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct 201 AGTGGTTCAATCTGTGATGTAACCTCTCATTCCGAGAGGGAAACACTTATGCAAAAC-GT 259 Query 240 CTCAAAGATGTTCGATGGCAAGCTGAACATTCTTGTGAACAATGTTGGCGTAGTTAATC- 298 ||||| |||||| |||||||| |||||||||||||||||||| | ||||||| || | Sbjct 260 CTCAACGATGTTTGATGGCAAACTGAACATTCTTGTGAACAACGCTGGCGTAATT-CGCA 318 Query 299 CAAAGCCAACAATAGAATATGTGGCAGC-CGATTTCTCGTT-CAGTATTTCAACAAACTT 356 |||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||| Sbjct 319 CAAAGCCAACAATAGAATATGTGGCA-CACGATTTCTCGTTCCA-TATTTCAACAAACTT 376 Query 357 GGAATCTGCTTATCACCTTAGCCAACTTTCACATCCTCTCCTAAAAGCTTCAGAATTTGG 416 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 377 GGAATCTGCTTATCACCTTAGCCAACTTTCTCATCCTCTCCTAAAAGCTTCGGAATTTGG 436 Query 417 AAGCATCATCTTCATTTCTTCTGTTGGAGGGGTTGTGTCAATGGAGTGTGGATCTATCTA 476 ||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 437 AAGCATCGTCTTTATTTCCTCTGTTGGAGGAGTTGTATCAATGGAGTGTGGATCTATATA 496 Query 477 TAGTTTAACGAAAGGAGCTTTGAATCAACTAGCAAAAACTTTGGCATGTGAATGGGCAAG 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 TAGTTTAACGAAAGGAGCTTTGAATCAACTAGCAAAAACTTTGGCATGTGAATGGGCAAG 556 Query 537 AGATGGCATAAGAGCCAACTCTGTTGCTCCTAATTTTATCTACACTGCTATGGCTCAACC 596 ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| Sbjct 557 AGATGGCATAAGAACCAACTCTGTTGCTCCTAATTTTATCCATACTGCTATGGCTCAACT 616 Query 597 TTTTTTCAAAGACGCCGATTACGAGAAGAGTTTGGTTAGTAGAACTCCACTTGGTCGCGC 656 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 617 TTTTTTCAAAGACGCCGATTATGAGAAGAGTTTGGTTAGTAGAACTCCACTTGGTCGCGC 676 Query 657 TGGAGAGCCAA-ATGAGGTTTCATCACTTGTGGCTTTTCTGTGTCTACCTGCAGCTTCAT 715 ||||||||||| | |||||| ||||||||||||||||||| ||||||||||| ||||||| Sbjct 677 TGGAGAGCCAAGA-GAGGTTGCATCACTTGTGGCTTTTCTATGTCTACCTGCTGCTTCAT 735 Query 716 ATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAATGGTTTCTCCTATA 775 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 736 ATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAACGGTTTCTCCTATA 795 Query 776 AGCCACAGGCTTGA 789 |||||||||| ||| Sbjct 796 AGCCACAGGCCTGA 809 > Ahg481846 jgi|Araly1|481846|fgenesh2_kg.4__906__AT2G29310.1 Length=809 Score = 732 bits (396), Expect = 0.0 Identities = 665/796 (84%), Gaps = 14/796 (2%) Strand=Plus/Plus Query 1 ATGGATAAAAGATGGAGTCTTCAGGGTATGACCGCTCTTGTAACTGGTGGAGCCAGCGGA 60 ||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||||| Sbjct 9 ATGGATAAAAGATGGAGTCTTCAATGTATGACTGCTCTTGTGACCGGTGGAGCCAGCGGA 68 Query 61 ATCGGGCATGCTATAGTAGAGGAGCTAGCCGGTCTTGGAGCTAGAATCTATGTATGCGAT 120 || || |||| |||||||||||| |||| || |||||||||||||| ||||||| || Sbjct 69 ATTGGTTATGCCATAGTAGAGGAGTTAGCTAGTTTTGGAGCTAGAATCCATGTATGTGAC 128 Query 121 ATATCTGAAACACTGCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTA 180 || |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 ATCTCTGAAACTCTTCTCAATCAAAGTTTAAGTGAATGGGAAAAGAAAGGGTTTCAAGTG 188 Query 181 AGTGGTTCAATATGTGATGTATCCTCTCATTCCGAGAGGGAAACACTTATGCAAACAGTC 240 ||||||||| | ||||||||| | |||| | |||| || |||| ||| |||||||| || Sbjct 189 AGTGGTTCAGTCTGTGATGTAACTTCTCGTCCCGATAGAGAAAAACTGATGCAAACCGTT 248 Query 241 TCAAAGATGTTCGATGGCAAGCTGAACATTCTTGTGAACAATGTTGGCGTAGTTAATCCA 300 || | |||| |||||||| || ||||||||||| ||||||||||| ||| || | Sbjct 249 TCCTCGCTGTTTGATGGCAAACTCAACATTCTTGTAAACAATGTTGGTGTACTTCG-CGG 307 Query 301 -AAGCCAACAATAGAATATGTGGCAGCCGATTTCTCGTT-CAGTATTTCAACAAACTTGG 358 |||| ||||| ||||||||||||| |||||||| || || || |||||||| |||| Sbjct 308 GAAGCTAACAACGGAATATGTGGCAGATGATTTCTCTTTTCAC-ATCTCAACAAATTTGG 366 Query 359 AATCTGCTTATC-ACCTTAGCCAACTTTCACATCCTCTCCTAAAAGCTTCAGAATTTGGA 417 || |||||| || | ||||||| ||||||||||||||| |||| ||||||| ||||||| Sbjct 367 AAGCTGCTT-TCCATTTTAGCCAGCTTTCACATCCTCTCTTAAAGGCTTCAGGATTTGGA 425 Query 418 AGCATCATCTTCATTTCTTCTGTTGGAGGGGTTGTGTCAATGGAGTGTGGATCTATCTAT 477 |||||| |||| || || ||||| |||| |||| ||| | || |||||||| || ||| Sbjct 426 AGCATCGTCTTTATGTCCTCTGTCACAGGGATTGTATCAGTTGAATGTGGATCCATTTAT 485 Query 478 AGTTTAACGAAAGGAGCTTTGAATCAACTAGCAA-AAACTTTGGCATGTGAATGGGCAAG 536 || |||||||||||||||||||||| || | | ||| |||||||||||||||||||| Sbjct 486 GGTCTAACGAAAGGAGCTTTGAATCAGTTAACTAGAAA-TTTGGCATGTGAATGGGCAAA 544 Query 537 AGATGGCATAAGAGCCAACT-CTGTTGCTCCTAATTTTATCTACACTGCTATGGCTCAAC 595 |||||||||||||||||| | ||||||| |||||| || || | ||| || || ||||| Sbjct 545 AGATGGCATAAGAGCCAA-TGCTGTTGCACCTAATGTTGTCAAGACTCCTCTGTCTCAAT 603 Query 596 CTTTTTTCAAAGACGCCGATTACGAGAAGAGTTTGGTT-AGTAGAACTCCACTTGGTCGC 654 ||| | || | |||| || || | || || | ||| || |||||||||||||||||||| Sbjct 604 CTTATCTCGAGGACGTCGGTTTCAAGGAGGGATTG-TTGAGTAGAACTCCACTTGGTCGT 662 Query 655 GCTGGAGAGCCAAATGAGGTTTCATCACTTGTGGCTTTTCT-GTGTCTACCTGCAGCTTC 713 | ||||||||||||||| ||| ||||||| |||| | |||| |||||||||||||||||| Sbjct 663 GTTGGAGAGCCAAATGAAGTTGCATCACTAGTGG-TCTTCTTGTGTCTACCTGCAGCTTC 721 Query 714 ATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAATGGTTTCTCCTA 773 |||||||||||||| ||||||||| ||||||| ||| ||||||| ||||| |||||||| Sbjct 722 TTATATTACTGGTCAAACCATTTGTATTGATGGTGGTTTCACTGTTAATGGATTCTCCTA 781 Query 774 TAAGCCACAGGCTTGA 789 | |||||||||||||| Sbjct 782 TCAGCCACAGGCTTGA 797 > Ahg481843 jgi|Araly1|481843|fgenesh2_kg.4__903__AT2G29290.2 Length=1329 Score = 195 bits (105), Expect = 6e-49 Identities = 127/138 (92%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 652 CGCGCTGGAGAGCCAAATGAGGTTTCATCACTTGTGGCTTTTCTGTGTCTACCTGCAGCT 711 |||| ||||||| ||||||| |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 1152 CGCGTTGGAGAGGCAAATGAAGTTTCATCGCTTGTGGCATTTCTCTGTCTTCCTGCAGCT 1211 Query 712 TCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTCAATGGTTTCTCC 771 || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1212 TCTTATATTACTGGTCAGACCATTTGTGTTGATGGAGGTCTCACTGTTAATGGCTTCTCC 1271 Query 772 TATAAGCCACAGGCTTGA 789 ||| |||||||||||||| Sbjct 1272 TATCAGCCACAGGCTTGA 1289 > Ahg481850 jgi|Araly1|481850|fgenesh2_kg.4__910__AT2G29350.1 Length=1118 Score = 156 bits (84), Expect = 3e-37 Identities = 244/318 (77%), Gaps = 23/318 (7%) Strand=Plus/Plus Query 465 TGGATCTATCTATAGTTTAACGAAAGGAGCTTTGAATCAACTAGC-AAAAACTTTGGCAT 523 |||||| |||||| | ||| |||||||| ||||||| || || | |||| || || | Sbjct 592 TGGATCCATCTATGGAGCAACCAAAGGAGCCATGAATCAGCTGGCTAGAAAC-TTAGCTT 650 Query 524 GTGAATGGGCAAGAGATGGCATAA-GAGCCAACTCTG-TTGCTCCTAATTTTATCTAC-A 580 | |||||||| || || ||||| || | ||||||| ||| |||| | |||| || | Sbjct 651 GCGAATGGGCGAGCGACAACATAAGGA-CTAACTCTGTTTG-TCCTTGGTATATC-ACAA 707 Query 581 CTGCTATG-GCTCAAC-CTTTTTTCAAAGACGCCGATTACGAGAAG-AGTTTGGTTAGTA 637 || || || | | ||| ||||||| | || | | ||| || ||| || ||| ||| Sbjct 708 CTTCTTTGAG-T-AACGATTTTTTCGATGAAG-AGTTTAAGA-AAGAAG--CGGTGCGTA 761 Query 638 GAACTCC-ACTTGGTCGCGCTGGAGAGCCAAATGAGGTTTCATCACTTGTGGCTTTTCTG 696 | || || | | || || | ||||||| ||||||| || ||||| |||||||| ||||| Sbjct 762 GGACACCGA-TGGGACGTGTTGGAGAGGCAAATGAAGTCTCATCGCTTGTGGCATTTCTT 820 Query 697 TGTCTACCTGCAGCTTCATATATTACTGGTCAGACCATTTGTGTTGATGGAGGT-CTCAC 755 ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | ||| Sbjct 821 TGTCTTCCTGCAGCTTCTTATATTACTGGTCAGACCATTTGTGTTGACGGAGGTGC-CAC 879 Query 756 TGTCAATGGT-TTCTCCT 772 |||||||||| || |||| Sbjct 880 TGTCAATGGTCTT-TCCT 896 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29125908588 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5