BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30840.1 Length=1256 Score E Sequences producing significant alignments: (Bits) Value Ahg482001 jgi|Araly1|482001|fgenesh2_kg.4__1061__AT2G30840.1 1615 0.0 > Ahg482001 jgi|Araly1|482001|fgenesh2_kg.4__1061__AT2G30840.1 Length=1163 Score = 1615 bits (874), Expect = 0.0 Identities = 1032/1108 (93%), Gaps = 12/1108 (1%) Strand=Plus/Plus Query 7 GAAGAAGAAGATGGAAGCAACATACGATCGTGCTAGTGAGGTAAAAGCTTTTGACGAGTT 66 |||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| | Sbjct 1 GAAGAAGAAGATGGAAGCAAAAAACGATCGTGCTAGTGAGGTAAAAGCTTTCGACGAGAT 60 Query 67 GAAGATCGGCGTAAAAGGTCTCCTAGACGCCGGAGTTACTCAGATCCCACGTATCTTCCA 126 ||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||| Sbjct 61 GAAGATCGGCGTAAAGGGTCTCGTCGACACCGGAGTTACTCAGATCCCACGTATCTTCCA 120 Query 127 TCATCCACATCTTAATTTAACCGACTCAAATCTACTTCTTTCCTCTACAACGATGGTTAT 186 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCACCCACATCTCAGTTTAACCGACTCAAATCTACTTCTTTCCTCTACAACGATGGTTAT 180 Query 187 ACCAACAATCGATCTTAAAGGAGGCGTGTTCGACGAGTACACAGTCACGCGAGAGAGCGT 246 |||||| |||||||| || ||||||||||||||||||| ||||||||||||||||| ||| Sbjct 181 ACCAACGATCGATCTCAATGGAGGCGTGTTCGACGAGTCCACAGTCACGCGAGAGAACGT 240 Query 247 CATCGCGATGATCAGAGACGCGGTTGAG-AGATTCGGGTTTTTCCAGGTGATTAACCATG 305 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 241 GATCGCGATGATCAGAGACGCGGTTGAGAAG-TTCGGGTTTTTCCAGGTGATTAACCATG 299 Query 306 GGATTAGTAATGATGTTATGGAGAAGATGAAAGATGGGATTCGTGGGTTTCATGAGCAAG 365 ||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 300 GGATTCCTATTGATGTTATGGAGAAGATGAAATATGGGATTCGTGGGTTTCATGAGCAAG 359 Query 366 ACTCAGACGTTAGGAAAAAGTTTTATACTCGTGACGTCACCAAAACA-GTTAAGTATAAC 424 |||||||||| |||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct 360 ACTCAGACGTGAGGAAAAAGTTTTATACTCGTGACATCACCAAAA-AGGTCAAGTATAAC 418 Query 425 AGTAATTTTGATCTTTATAGCTCTCCTTCAGCGAACTGGAGAGATACCTTGAGTTGCTTT 484 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 419 AGTAATTTCGATCTTTATAGCTCTCCTTCAGCTAATTGGAGAGATACCTTGAGTTGTTTT 478 Query 485 ATGGCTCCTGATGTTCC-AGAAACAGAGGACTTACCAGATATTTGTGGGGAAATCATGTT 543 ||| | ||||||||||| | |||||||||||||||||||||||||||||||||| ||||| Sbjct 479 ATGTCCCCTGATGTTCCTA-AAACAGAGGACTTACCAGATATTTGTGGGGAAATTATGTT 537 Query 544 GGAATATGCGAAACGAGTGATGAAACTAGGGGAACTAATCTTTGAGCTTTTATCAGAAGC 603 ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GGAGTATTCGAGACGAGTGATGAAACTAGGGGAACTAATCTTTGAGCTTTTATCAGAAGC 597 Query 604 TTTAGGGCTGAATCCTAACCACTTGAAAGAAATGGATTGCACAAAAGGTTTATTGATGCT 663 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TTTAGGGCTGGATCCTAACCACTTGAAAGAAATGGATTGCACAAAAGGTTTATTGATGCT 657 Query 664 TTCTCATTACTACCCGCCTTGTCCTGAGCCTGGT-TTAACTTTTGGCACAAGTCCGCATT 722 ||||||||| |||||||||||||||||||||| | || ||||| || ||||||| ||||| Sbjct 658 TTCTCATTATTACCCGCCTTGTCCTGAGCCTGATCTT-ACTTTCGGTACAAGTCAGCATT 716 Query 723 CAGACAGATCTTTTCTCACTATTCTTCTTCAAGATCACATTGGTGGGCTTCAAGTTCGTC 782 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 717 CAGACAGATCTTTTCTCACTATTCTTCTTCAAGATCACATTGGTGGGCTTCAAGTTCTTC 776 Query 783 AGAATGGTTATTGGGTTGATGTTCCTCCTGTTCCGGGAGCTCTTCTCGTTAACCTCGGAG 842 |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 777 AGAATGGTTACTGGGTTGATGTTCCTCCTGTTCCAGGAGCTCTTCTCGTTAATCTCGGAG 836 Query 843 ATCTTTTACAGCTTATGACCAATGATCA-GTTTGTGAGCGTAGAGCATAGAGTTCTGGCT 901 ||||||||||||||||||| ||| | || |||| ||||||| || ||||||||| ||||| Sbjct 837 ATCTTTTACAGCTTATGACGAATAA-CAAGTTTTTGAGCGTGGAACATAGAGTTTTGGCT 895 Query 902 AATAAAGGTGAAAAGCCGCGGATCTCAGTAGCATCTTTCTTTGTGCATCCTTTACCGAGT 961 |||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 896 AATAGAGGGGAAGAGCCGCGGATCTCAGTCGCATCTTTCTTTGTGCATCCTTTACCGAGT 955 Query 962 TTACGAGTTTATGGACCGATAAAAGAACTTTTGTCTGAGCAAAACCTTCCCAAGTATAGA 1021 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 956 TTGCGAGTTTATGGACCGATAAAAGAGCTTTTGTCTGAGCAAAACCTTCCCAAGTATAGA 1015 Query 1022 GACACTACCGTCACTGAGTACACGAGTCATTACATGGCAAGAGGACTTTATGG-AAATTC 1080 |||||||| |||| ||||||||| | ||||||||||| |||||||| |||| |||| | Sbjct 1016 GACACTACAGTCAGTGAGTACACAAACCATTACATGGCGAGAGGACTCGATGGGAAAT-C 1074 Query 1081 TGTGTTGCTTGATTTCAAGATCTGATAA 1108 |||||||||||||||||||||||||||| Sbjct 1075 TGTGTTGCTTGATTTCAAGATCTGATAA 1102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46929310827 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5