BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31010.1
Length=3054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482025 jgi|Araly1|482025|fgenesh2_kg.4__1085__AT2G31010.1 4169 0.0
Ahg938858 jgi|Araly1|938858|scaffold_503049.1 536 3e-151
> Ahg482025 jgi|Araly1|482025|fgenesh2_kg.4__1085__AT2G31010.1
Length=2721
Score = 4169 bits (2257), Expect = 0.0
Identities = 2613/2774 (94%), Gaps = 67/2774 (2%)
Strand=Plus/Plus
Query 120 GTGCAGAAACAAGAGCAGATGGGTCTAATTCTACACCAATCAAAGCTTTGTTCTCGATTT 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 4 GTGCAGAAACAAGAGCAGATGGGTTTAATTCTACACCAATCAAAGCTTTGTTCTCGATTT 63
Query 180 AGAAAGCCTCTTTTGGGGTAAAGAGATGGTGAGAAA--A-T-A-A-GTTATA-CAAATTA 232
||||||||||||||||||| || ||||||||||||| | | | | || | |||||||
Sbjct 64 AGAAAGCCTCTTTTGGGGT-AACAGATGGTGAGAAAGTAGTGATACAATACATCAAATTA 122
Query 233 TCTGGAAGATGGAAGAGAGACGAGATGATGAATCAAGCCCTACACACCAGGGATCAGAAC 292
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 TCTGAAAGATGGAAGAGAGACGAGATGATGAATCAAGCCCTACACACCAGGGATCAGAAC 182
Query 293 TTGCGGAAAGGGTGAAGTTGCTTTCTTTTGAATCTCAAGGTGAAGCTTTGAGTAAGGACT 352
||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 183 TTGTGGAAAGGGTTAAGTTGCTTTCTTTTGAATCTCAAGGTGATGCTTTGAGTAAGGATT 242
Query 353 CCCCTAGAAGTGTTGAACAGGATTGCTCTCCAGGTCAAAGAGCATCACAGCATCTTTGGG 412
| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 243 CTCCTACAAGTGTTGAGCAGGATTGCTCTCCAGGGCAAAGAGCATCACAGCATCTTTGGG 302
Query 413 ATACTGGAATACTCTCTGAACCTATTCCTAATGGTTTCTACTCAGTTGTTCCGGATAAGA 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 303 ATACTGGAATACTCTCTGAACCGATTCCTAATGGTTTCTACTCAGTTGTTCCGGATAAGA 362
Query 473 GAGTAAAGGAGCTATATAATAGACTACCTACTCCGAGTGAGCTTCATGCTTTGGGAGAGG 532
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GAGTAAAGGAACTATATAATAGACTACCTACTCCGAGTGAGCTTCATGCTTTGGGAGAGG 422
Query 533 AAGGTGTCAGAATTGAAGTTATTCTTGTTGATTTTCAAAAAGATAAGAAGCTCGCAATGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AAGGTGTCAGAATTGAAGTTATTCTTGTTGATTTTCAAAAAGATAAGAAGCTCGCAATGC 482
Query 593 TTAAACAGTTGATCACTACACTTGTCAGCGGCAGCGGCACAAATCCTGCTTTGGTGATTA 652
| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||
Sbjct 483 TAAAACAGTTGATCACTACGCTTGT------CAGCGGCTCAAATCCTGCTTTGGTGATTA 536
Query 653 AGAAAATAGCAGGAACGGTCTCTGACTTTTACAAACGTCCAACACTAGAAAGCCCTTCAA 712
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 537 AGAAAATAGCTGGAACGGTATCTGACTTTTACAAACGTCCAACACTGGAAAGCCCTTCAA 596
Query 713 AACTTGCTCTAGAGGAAAATGCGTTCTTGTTTGAAAACCATGGTGCTCAGTTGCTTGGCC 772
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 AACTTGCCCTAGAGGAAAATGCGTTTTTGTTTGAAAACCATGGTGCTCAGTTGCTTGGCC 656
Query 773 AGATTAAGCGTGGTTGCTGTCGAGCTCGGGCAATTTTGTTCAAAGTTCTAGCTGATACTG 832
| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 AAATTAAGCGTGGGTGCTGTCGAGCTCGGGCTATTTTGTTCAAAGTTCTAGCTGATACTG 716
Query 833 TAGGACTTGAAAGTCGGCTGGTGGTGGGTTTGCCTAGTGATGGGACTGTGAATTGCATGG 892
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 TAGGACTTGAAAGTCGGCTGGTGGTGGGTCTGCCTAGTGATGGGACTGTGAATTGCATGG 776
Query 893 ACTCTAACAAACACATGTCTGTTATAGTTGTGCTGAATTCCGTTGAACTACTAGTCGATC 952
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 777 ACTCTAACAAACACATGTCTGTTATAGTTGTGCTAAATTCCGTTGAACTACTAGTCGATC 836
Query 953 TTATTCGGTTTCCTGGTCAGTTGGTACCGCGATCAGCCAAGGCAATTTTCATGTCACACA 1012
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 837 TAATTCGGTTTCCTGGTCAGCTGGTACCGCGATCAGCCAAGGCAATTTTCATGTCACACA 896
Query 1013 TCTCGCCTGCTGGAGAGAGTGATTCTGCAGAAAACGACTCTTGTGACTCACCTTTGGAGC 1072
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 TCTCACCTGCTGGAGAGAGTGATTCTGCAGAAAACGACTCTTGTGACTCGCCTTTGGAGC 956
Query 1073 CAAATAGTCCTTTATATGAGAGAAGAGATCCTGAGA-GTACAGAAAAAGATGAAAATCTT 1131
|||||||||||||||||||||||||||||||||||| || | | | |||
Sbjct 957 CAAATAGTCCTTTATATGAGAGAAGAGATCCTGAGAGGT-C-------G--G-----CTT 1001
Query 1132 CAATT-TTATCGGAAGTTAGAAGGATATCCAAATGCATCTGGTTCATCACTGCGTAGTTT 1190
| || ||| | |||| | ||||||||||||||||| |||||||||||| |||
Sbjct 1002 CCCTTGTTA-C-------AGAA--A-ATCCAAATGCATCTGGTCCATCACTGCGTAATTT 1050
Query 1191 GATGCTCAGACCTTCTACAGCTATTGAAAGGAAATTGAGCAACACCTCGCATAGTGAACC 1250
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1051 GATGCTCAGACCTGCTACAGCTATTGAAAGGAAATTGAGCAACACTTCGCATAGTGAACC 1110
Query 1251 AAATGTTGCTACTGTATTCTGGAGGCGTAGCCGCAGAAAAGTAATTGCTGAACAGAGAAC 1310
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1111 AAATGTTGCCACTGTATTCTGGAGACGTAGCCGCAGAAAAGTAATTGCTGAACAGAGAAC 1170
Query 1311 AGCTAGCTCAAGCCCAGAACACCCATCTATGCGACGTGGACGATCAATGTTGAGCACTGG 1370
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 AGCTAGTTCAAGCCCAGAACACCCATCTATGCGACGTGGACGATCAATGTTGAGCACTGG 1230
Query 1371 TAGGAATTCTTTTAGGGATTACACTGGTGAAGCATCATCTCCTTCAAGTTCATCCACATC 1430
|||||||| | |||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 1231 AAGGAATTCATACCGGGATTACGCTGGTGATG---CATCTCCTTCAAGTTCATCCACATC 1287
Query 1431 AGAAATTCGTAAAACTAGACGGCGAAGTTTTAGGATCACACCAGAAATTGGCGATGACAT 1490
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1288 AGAAATTCGTAAAACTAGACGGCGAAGTTTTAGGATCACCCCAGAGATTGGCGATGACAT 1347
Query 1491 TGCAAGCGCTGTACGAGAAATGTATGAGAAATCAAAGCAAAACCGTCTCTTGCAGGGTCG 1550
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1348 TGCAAGCGCTGTAAGAGAAATGTATGAGAAATCAAAGCAAAACCGTCTCTTGCAGGGCCG 1407
Query 1551 AGAGGATGAAAACAGCTCAGTTATCGATAACAACGTGTCTGGTCTCCATCTTGATGATGA 1610
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1408 AGATGATGAAAACAGCTCAGGTATCGATAACAACGTGTCTGGTCTCCATCTTGATGATGA 1467
Query 1611 GTTAAATTCTAAGAAGACAATGTCATTGCCCTCATCTCCCCATGCTTACAGGTGTCAAAC 1670
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1468 GTTAAACTCAAAGAAGACAATGTCATTGCCATCATCTCCCCATGCTTACAGGTGTCAAAC 1527
Query 1671 ATTTGGACGAAGAGGGCCTTCAGAATTTGCCGTGAAGGATACATGGAATAAAGTGGTTGA 1730
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 ATTTGGAAGAAGAGGGCCTTCAGAATTTGCCGTGAAGGATACATGGAATAAAGTGGTTGA 1587
Query 1731 GTCTTCCACATTGCAGAATCAGCCTTTATTACCCTATCAAGAATGGGACATTGACTTCTC 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 GTCTTCCACATTGCAGAATCAGCCTTTATTACCCTATCAAGAATGGGACATTGACTTCTC 1647
Query 1791 AGAGCTGACTGTTGGAACTCGGGTGGGGATTGGtttttttGGTGAAGTTTTTCGTGGAGT 1850
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1648 AGAGCTGACTGTTGGAACTCGGGTGGGGATTGGGTTTTTTGGTGAAGTTTTTCGTGGAGT 1707
Query 1851 ATGGAATGGGACAGATGTTGCAATCAAATTGTTTCTGGAGCAAGATCTTACTGCCGAAAA 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 ATGGAATGGGACAGATGTTGCAATCAAATTGTTTCTGGAGCAAGATCTTACTGCCGAAAA 1767
Query 1911 CATGGAAGATTTCTGCAATGAGATATCAATTCTCAGCCGTGTTCGCCACCCAAATGTTGT 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 CATGGAAGATTTCTGCAATGAGATATCAATTCTCAGCCGTGTTCGCCACCCAAATGTTGT 1827
Query 1971 ACTATTT-TTGGGTGCATGCACAAAACCTCCACGCTTATCCATGATCACGGAGTACATGG 2029
| |||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1828 ATTATTCCTTGG-TGCATGCACAAAACCTCCACGCTTATCTATGATCACGGAATACATGG 1886
Query 2030 AGCTGGGATCGTTGTATTATTTGATCCACATGAGTGGTCAGAAGAAGAAACTTAGCTGGC 2089
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 AGCTGGGATCTTTGTATTATTTGATCCACATGAGTGGTCAGAAGAAGAAACTTAGCTGGC 1946
Query 2090 ACAGAAGGCTCAGGATGCTTAGAGACATCTGCAGGGGTTTGATGTGCATACACCGGATGA 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 ACAGAAGGCTCAGGATGCTTAGAGACATCTGCAGGGGTTTGATGTGCATACACCGGATGA 2006
Query 2150 AGATAGTCCACCGCGACCTAAAGAGTGCCAACTGTCTAGTGGACAAACATTGGACAGTCA 2209
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2007 AGATAGTCCACCGTGACCTAAAAAGTGCCAACTGTCTAGTGGACAAACATTGGACAGTCA 2066
Query 2210 AGATCTGTGATTTTGGGCTGTCAAGAATAATGACTGATGAAAACATGAAGGACACTTCAT 2269
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2067 AGATCTGTGATTTTGGGCTCTCAAGAATAATGACTGACGAAAACATGAAGGACACTTCAT 2126
Query 2270 CTGCTGGGACACCAGAGTGGATGGCTCCAGAGCTCATTCGCAACAGGCCTTTTACAGAGA 2329
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2127 CTGCTGGTACACCAGAGTGGATGGCTCCAGAGCTCATTCGCAACAAGCCTTTTACAGAGA 2186
Query 2330 AATGTGATATCTTTAGTCTTGGGGTCATAATGTGGGAACTTTCAACTTTACGTAAACCAT 2389
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 AGTGTGATATCTTTAGTCTTGGGGTCATAATGTGGGAACTTTCAACTTTACGTAAACCAT 2246
Query 2390 GGGAAGGAGTTCCACCTGAGAAGGTTGTCTTTGCTGTTGCACATGAAGGGTCACGTTTGG 2449
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2247 GGGAAGGAGTTCCACCTGAGAAGGTTGTCTTTGCTGTTGCGCATGAAGGGTCACGTTTGG 2306
Query 2450 AGATTCCTGATGGTCCACTCAGCAAACTAATTGCAGATTGTTGGGCAGAGCCTGAAGAAC 2509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2307 AGATTCCTGATGGTCCACTCAGCAAACTAATTGCAGATTGTTGGGCAGAGCCTGAAGAAC 2366
Query 2510 GCCCAAATTGTGAAGAGATACTTAGAGGCTTACTCGATTGTGAGTACACACTGTGCTAAC 2569
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2367 GCCCAAATTGTGAAGAGATACTTAGAGGCTTGCTCGATTGTGAGTACACACTGTGCTAAC 2426
Query 2570 AACACTTCTCTTT-CGGGGGGATATGAGCCGGAAGATGTTTTAGCTCAGAAAACATCCCA 2628
||||||| ||| |||| ||| |||||| || ||||||||||||||||| || ||||
Sbjct 2427 GCCACTTCTTTTTTCGGGA--ATACGAGCCGAAAAATGTTTTAGCTCAGAAAGCAGCCCA 2484
Query 2629 GCTTCTTTTAAATCTCGGCTCTTAAATTATCAACCTGAGTGGCATAATTTTTTAAGATCA 2688
|||||||| |||||||||||||||||||||| || ||||| ||||| ||||| |||||||
Sbjct 2485 GCTTCTTT-AAATCTCGGCTCTTAAATTATCCACATGAGTAGCATACTTTTTAAAGATCA 2543
Query 2689 TGAGAACTTAGAGGCTATAATGAGACAAGTTCATAGTTCAGTTTTGATAGCTGTGGAACA 2748
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 2544 TGAGAACTTAGAGGCTATAATGAGATAAATTCATAGTTCAGTTTTGATAGCTGTGGAAGA 2603
Query 2749 GGCAGAGACACCAAATGTAGGATACAAACAAGCATGTCTATTAAGCTGCCACTGGTGTGA 2808
||||||| ||||||||||||||||||||||||||||||| | || || |
Sbjct 2604 GGCAGAGGCACCAAATGTAGGATACAAACAAGCATGTCT-----G-TG----TG-----A 2648
Query 2809 TTCATGTTCTCACAGGCAATACTTCTTTTGTTGGCTATTGAAGAGCATTTTGGTCTATCT 2868
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2649 TTCATGTTCTCACAGGCAATG-TTCTTTTGTTGGCTATCGAAGAGCATTTTGGTCTATCT 2707
Query 2869 TAAGAAAATATATA 2882
||||||||||||||
Sbjct 2708 TAAGAAAATATATA 2721
> Ahg938858 jgi|Araly1|938858|scaffold_503049.1
Length=2471
Score = 536 bits (290), Expect = 3e-151
Identities = 645/811 (80%), Gaps = 46/811 (6%)
Strand=Plus/Plus
Query 1744 CAGAATCAGCCTTTATTACCCTATCAAGAATGGGACATTGACTTCTCAGAGCTGACTGTT 1803
|||||| |||| |||||||| ||| |||||||| |||| |||||||| ||| ||||||||
Sbjct 1627 CAGAATAAGCCATTATTACCATATGAAGAATGGAACATAGACTTCTCTGAGTTGACTGTT 1686
Query 1804 GGAACTCGGGTGGGGATTGGtttttttGGTGAAGTTTTTCGT-GGAGTATGGAATGGGAC 1862
|| || || || || ||||| ||||| || ||||| || ||| ||| | ||||| |||||
Sbjct 1687 GGGACACGTGTCGGAATTGGATTTTTCGGAGAAGTATTCCGTGGGA-TCTGGAACGGGAC 1745
Query 1863 AGATGTTGCAATCAAATTGTTTCTGGAGCAAGATCTTACTGCCGAAAACATGGAAGATTT 1922
||| ||||| |||||| |||| || |||||||| ||||| || || |||||||| || ||
Sbjct 1746 AGACGTTGCGATCAAAGTGTTCCTTGAGCAAGACCTTACAGCTGAGAACATGGAGGACTT 1805
Query 1923 CTGCAATGAGATATCAATTCTCAGCCGTGTTCGCCA-CCCAAATGTTGTACTATT-TTTG 1980
||||||||||||||||||||| ||||| || | || ||| |||||| |||| || ||
Sbjct 1806 CTGCAATGAGATATCAATTCTTAGCCGACTTAGACATCCC-AATGTTATACTGTTCCTT- 1863
Query 1981 GGTGCATGCACAAAACCTCCACGCTTATCCA-TGATCACGGAGTACATGGAGCTGGGATC 2039
|| ||||||||||| |||||||| |||| || ||||||| ||||||||||| |||||||
Sbjct 1864 GGAGCATGCACAAAGCCTCCACGATTAT-CATTGATCACTGAGTACATGGAAATGGGATC 1922
Query 2040 GTTGTATTATTTGATCCACATGAGTGGTCAGAAGAAGAAACTT-AGCTGGCACA-GAAGG 2097
|||||||||||| ||||||||||||| || || ||| | || ||||||| | ||| |
Sbjct 1923 TTTGTATTATTTGCTCCACATGAGTGGACAAAAAAAG-AGGTTAAGCTGGCGGAGGAA-G 1980
Query 2098 CTCAGGATGCTTAGAGACATCTGCAGGGGTTTGATGTGCATACACCGGATGAAGATAGTC 2157
|| | |||||| | ||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 1981 CTAAAGATGCTGCGTGACATTTGCAGGGGCTTGATGTGCATACACCGGATGGGGATAGTA 2040
Query 2158 CACCGCGACCTAAAGAGTGCCAACTGTCTAGTGGA-CAAAC-ATTGGACAGTCAAGATCT 2215
||||| || ||||||| || |||||||| | || | ||| | ||||||||||||||||
Sbjct 2041 CACCGTGATATAAAGAGCGCAAACTGTCT-TTTGAGC-AACAAATGGACAGTCAAGATCT 2098
Query 2216 GTGATTTTGGGCTGTCAAGAATAATGACTGATGAA-AACA-TGA-AGGACACT-TCATCT 2271
||||||||||||| || ||||||||||| | | | |||| ||| || |||| || ||
Sbjct 2099 GTGATTTTGGGCTCTCGAGAATAATGACAG--GCACAACAATGAGAG-ACACAGTC-TCA 2154
Query 2272 GCTGGGACACCAGAGTGGATGGCTCCAGAGCTCATTCGCAAC-AGGCCTTTTACAGAGAA 2330
|| || || ||||||||||||||||| || || || ||||| || |||| | |||| ||
Sbjct 2155 GCAGGAACTCCAGAGTGGATGGCTCCTGAACTTATCCGCAATGAGCCCTTCT-CAGA-AA 2212
Query 2331 A-TGTGATATCTTTAGTCTTGGG-GTCATAATGTGGGAACTTT-CAACTTTA-CGTAAAC 2386
| ||||||||||| || ||| || || |||||||||||||| | || ||||| | | ||
Sbjct 2213 AGTGTGATATCTTCAG-CTTAGGTGTAATAATGTGGGAACTCTGCA-CTTTAACC-AGAC 2269
Query 2387 CATGGGAAGGAGTTCCACCTGAGAAGG-TTGTCTT-TGCTGTTGCACATGAAGG-GTCAC 2443
| ||||||||||| || ||||| | || |||| || |||| |||| | || || | | |
Sbjct 2270 CTTGGGAAGGAGTACCGCCTGA-ACGGGTTGT-TTATGCTATTGCTTACGAGGGAG-CTC 2326
Query 2444 GT-TTGGAGATTCCTGATGGTCCACTCAGCAAA-CTAATTGCAGATTGTTGGGCAGAGCC 2501
| ||| |||||||||| || || || | ||| || ||||||||||||||| |||| ||
Sbjct 2327 GGCTTG-AGATTCCTGAAGGACCGCTGGG-AAAGCTTATTGCAGATTGTTGGACAGAACC 2384
Query 2502 TGAAGAACGCCCAAATTGTGAA-GAGATACT 2531
||| || | || | ||| || ||||||||
Sbjct 2385 GGAACAAAGACCGAGTTGC-AATGAGATACT 2414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115337261860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5