BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31070.1
Length=2017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933639 jgi|Araly1|933639|scaffold_401627.1 1663 0.0
> Ahg933639 jgi|Araly1|933639|scaffold_401627.1
Length=1125
Score = 1663 bits (900), Expect = 0.0
Identities = 1051/1121 (94%), Gaps = 22/1121 (2%)
Strand=Plus/Plus
Query 518 TCATTTTGAAAGGTaaaaaaaTAATGGGACTTAAAGGATATAGCGTCGGAGAAGGAGGAG 577
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TCATTTTGAAAGGTAACAAAA-AATGGGACTTAAAGGTTATAGCGTCGGAGAAGGAGGAG 59
Query 578 GAGAGATAGTTGAGGTTCAAGGCGGTCACATAATCCGAGCCACTGGACGCAAAGACCGTC 637
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
Sbjct 60 GAGAGATAGTTGAGGTTCAAGGCGGTCATATAATCCGAGCCACGGGACGCAAAGATCGCC 119
Query 638 ATAGCAAAGTGTTCACATCAAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCACA 697
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATAGCAAAGTCTTCACATCAAAGGGTCCACGTGACCGGCGCGTGAGACTCTCAGCTCACA 179
Query 698 CGGCGATTCAATTCTACGATGTGCAAGACCGGTTAGGTTATGACCGGCCTAGCAAAGCCG 757
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 CGGCGATTCAATTCTACGATGTGCAAGACCGGTTAGGGTATGACCGGCCTAGCAAAGCCG 239
Query 758 TTGATTGGCTCATCAAGAAAGCCAAAACCGCTATTGATAAGCTTGAACTCGGGGAGacta 817
| ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||||
Sbjct 240 TAGATTGGCTCATCAAGAAAGCCAAAACCGCCATCGATAAGCTCGAAATCGGGGAGACTA 299
Query 818 ctactactactactCGTCAAGAACCGGTGAATACTAAACCGGAATCTCCCACTTTGGTTT 877
||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 300 CTACTACTA-T--TCGTCAAGAACCTGTGAATACTAAACCGGAATCTCCCAATTTGGTTT 356
Query 878 TCCAAAGAGAGAACAATGACCAAA--C-G------CAGTTCGTGGCGGCCAATCTTGATC 928
|||||||||| || |||||||||| | | ||||| ||||||||||||||||||
Sbjct 357 TCCAAAGAGAAAATAATGACCAAACGCAGCAAACACAGTTTGTGGCGGCCAATCTTGATT 416
Query 929 CTGAAGACGCAATGAAAACGTTTTTCCCGGCGACGACAACAACAAACGGTGGTGGTGGTA 988
||||||||||||||||||||||||| || |||||||||||||||||| | || ||||||
Sbjct 417 CTGAAGACGCAATGAAAACGTTTTTTCCTGCGACGACAACAACAAAC-G-GG-GGTGGTT 473
Query 989 CAAACATCAATTTCCAAAACTACCCTCATCAGGATGACAACAACATGGTCTCAAGAACAA 1048
||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 474 CAAACATGAATTTCCAAAACTACCCCCATCATGATGACGACAACATGGTCTCAAGAACAA 533
Query 1049 CAACACCACCACCAAACCTTAGCCAAGATCTTGGTCTCTCTCTTCACCCATTTCAAGGGA 1108
||||| || |||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 534 CAACAACAACACCGAACCTTAGCCAAGATCTTGGTCTCTCTCTTCACCCATTCCAAGGAA 593
Query 1109 ACAACAACACAGTCGTAGTTCCCGAGACCAACAATTTCACCACGACTCATTTCGACACGT 1168
||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| |
Sbjct 594 ACAACAACACAGTCGTAGTCCCCGAGAACAACAATTTCACCACGAATCATTTCGACACAT 653
Query 1169 TCGGGAGAATCTCTGGATGGAATCATCACGACTTAACTATGACGTCATCATCCTCATCAG 1228
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 654 TCGGGAGAATCTCTGGATGGAATCATCCCGACTTAACGATGACGTCATCATCCTCATTAG 713
Query 1229 AACATCAACAACAAGAACAAGAAGAAAGGAGTAATGGTGGTTTCATGGTGAatcatcatc 1288
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 714 AACATCAACAACAAGAACAAGAAGAAAGGAGTAACGGTGGATTCATGGTGAATCATCA-- 771
Query 1289 ctcaccatcatcatcatcaACCGTCGATGATGACATTGCTTAATAGTCAGCAACAACAAG 1348
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 -TCATCATCATCAGCATCAACCGTCGATGATGACATTGCTTAATAGTCAGCAACAACAAG 830
Query 1349 TGTTTCTTGGTGGCcaacaacaacaacaacaaAGGGGTACCCTTCAGTCCAGTTTATTCC 1408
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGTTTCTTGGTGGCCATCAACAACAACAACAAAGGGGTACCCTTCAGTCCAGTTTATTCC 890
Query 1409 CTCATTCGTTTCGTTCTTGGGatcatcatcaaacgacgtcggatcatcatcatcatcaga 1468
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 891 CTCATTCGTTTCGTTCTTGGGATCATCATCAAACGGTGTCGGATCATCATCATCA---GA 947
Query 1469 atcaAGCTTCTTCGATGTTTGCTTCATCATCACAGTATGGTTCTCATGGGATGATGATGA 1528
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 948 ATCAAGCTTCTTCGATGTTTGCTTCATCATCACAGTTTGGTTCTCATGGGATGATGATGA 1007
Query 1529 TGCAAGGCCTTAGTTTCCCCAACACTACAAGACTACTCCACGGAGAAGAAGCTACTCAAC 1588
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1008 TGCAAGGCCTTAGTTTCCCCAACACTACAAGACTACTCCATGGAGAAGAATCTACTCAAC 1067
Query 1589 CAAACTCTTCTTCTTCTCCTCCAAACTCACACCTCTAAACT 1629
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CAAACTCTTCTTCTTCTCCTCCAAACTCACACCTCTAAACT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75837677795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5