BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31150.1 Length=2049 Score E Sequences producing significant alignments: (Bits) Value Ahg320865 jgi|Araly1|320865|fgenesh1_pm.C_scaffold_4000922 1223 0.0 Ahg951784 jgi|Araly1|951784|scaffold_16300003.1 1061 0.0 > Ahg320865 jgi|Araly1|320865|fgenesh1_pm.C_scaffold_4000922 Length=1191 Score = 1223 bits (662), Expect = 0.0 Identities = 885/985 (90%), Gaps = 45/985 (5%) Strand=Plus/Plus Query 1020 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 274 Query 1080 ACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGT 1139 |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| || | Sbjct 275 ACAGACGAAACGAAGATAGGGATGGTTTAGTAGATGGTGGTCTCGAAGACGACATTTTTT 334 Query 1140 C-------TTCCA----A----A--A-----AC-GA--GA-AA-GAGATAGTGGAGCTTT 1172 | ||||| | | | || || || || |||||||||||||||| Sbjct 335 CCCCGAAATTCCAGGCTACTTCATCACCTGGACCGAAAGAGAAAGAGATAGTGGAGCTTT 394 Query 1173 TCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCTGCTaagaaagaagaaaagaaga 1232 ||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 TCAGGAAAGTTCAAGCTCAGCTCCGGGCTCGAGCTGCTGCTAAGAAAGAAGAAAAGAAGA 454 Query 1233 ctgaagaagCTTCTAAAGGACAGGGAGGAAAAGAGAGTGAGACAGTGGACTCCCTTCTTA 1292 |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct 455 CTGAAGAAGCTTCTAAAGGACAAGGAGGAAAAGATAGCGAGACAGTGGACTCCCTTCTTA 514 Query 1293 AGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAAACAAGTTAGCAATTTCAATTCTG 1352 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 515 AGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAAAAACAAGTTAGCAATTTTAATTCTG 574 Query 1353 AGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAGACAAAATCACAGTTCCAGTCGTT 1412 | |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 575 AAAAGCAGCTACAAAGAGATGATGATGCTTCAGAAAGACAAGATCACAGTTCCAATCGTT 634 Query 1413 TCGATTCGCGAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCA 1472 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 635 TTGATTCGCAAAACAAAGATCATAATGCAACACCCTTTACCAGGCCAGCATCAAGCTTCA 694 Query 1473 AACGTAATTCTCCTGTACCGAGACATAAATCTCAAGCCAGTTATTCTAGTGAGGCCATTT 1532 ||| ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||| Sbjct 695 GACGCAATTCGCCTGTACCAAGACATAAATCCCAAGCCAGCTATTCTAGTGAGGCCATTT 754 Query 1533 TTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGC 1592 ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 755 TTGATCAAGGTTCAAGTTACAGTGTGACTTGGACCCAGAAAAAGGATCAAGTAGAGTCGC 814 Query 1593 GTGATGAACCTGAATACGAGCCTGAGC------CTGAGTCTGCAGCTGAGTATGATGAAC 1646 ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| Sbjct 815 GTGATGAACCTGAATACGAACCTGAGCATGAGTCTGAGTCTGCAGCTGGGTATGATGAAC 874 Query 1647 CTGAACCTGAGGCTGAGTATGAACCTGAATCTGAACCAGAACTTGCTATTCTCGAATCAG 1706 ||||||| |||| |||||||||| ||||||||||||||| |||||||||||| || |||| Sbjct 875 CTGAACCCGAGGGTGAGTATGAATCTGAATCTGAACCAGGACTTGCTATTCTAGATTCAG 934 Query 1707 TGTCAGAGCTGAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGA-G-G-AGGATC 1763 |||||||||| |||| ||| ||||||||||||||||| ||||||||||| | | |||||| Sbjct 935 TGTCAGAGCTAAAACCAGAATCGTTTTACCAAGAGGAGGATGAAGATGAAGAGGAGGATC 994 Query 1764 ATAACTTCGTTATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAG 1823 || || |||| |||||||||||||||||||||||||||||||| ||| | | ||| Sbjct 995 ATGACGCCGTTGTAGATGAGTTATCAGATGATGACGAGTCTCTCGATA-----T-C-GAG 1047 Query 1824 GAAGAGACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAGAGCCATA 1883 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1048 GAAGAAACTGCGAAAGACGAAGATTTGAGTGCACTGAAGTTTGTAGAACTTAGAGCCATA 1107 Query 1884 GCAAAATCAAGAGGACTCAAAG-GAATTTCAAAGATGAAGAAAGTTGAGCTAGTGACTTT 1942 |||||| |||||||||| |||| || |||||||||| ||||||| ||| ||| ||| ||| Sbjct 1108 GCAAAAACAAGAGGACTTAAAGTGA-TTTCAAAGATAAAGAAAGCTGATCTACTGAATTT 1166 Query 1943 ATTGGGTAGTAGTAATAAAGCATGA 1967 ||||||||||| ||||||| ||||| Sbjct 1167 ATTGGGTAGTAATAATAAATCATGA 1191 > Ahg951784 jgi|Araly1|951784|scaffold_16300003.1 Length=1294 Score = 1061 bits (574), Expect = 0.0 Identities = 783/875 (89%), Gaps = 49/875 (6%) Strand=Plus/Plus Query 1151 GAGAAAGAGATAGTGGAGCTTTTCAAGAAAGTCCAAGTTCAGCTCCGGGCTCGAGCTGCT 1210 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 429 GAGAAAGAGATAGTGGAGCTTTTCAGGAAAGTCCAAGCTCAGCTCCGGGCTCGAGCTGCT 488 Query 1211 GCTaagaaagaagaaaagaagactgaagaagCTTCTAAAGGAC-AGGGAGGAAAAGAGAG 1269 ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 489 GCTAAGAAAGAAGAAAAGAAGACTGAAGAAGCTTCTAAAGGACAAGGG-GGAAAAGATAG 547 Query 1270 TGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAA 1329 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 CGAGACAGTGGACTCCCTTCTTAAGTTACTGAGGAAGCACTCAGGAGAACAAAGCAAGAA 607 Query 1330 ACAAGTTAGCAATTTCAATTCTGAGAAGCAGCTCCAAAGAGATGATGATGCTTCAGAAAG 1389 ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 608 ACAAGTTAGCAATTTTAATTCTGAAAAGCAGCTACAAAGAGATGATGATGCTTCAGAAAG 667 Query 1390 ACAAAATCACAGTTCCAGTCGTTTCGATTCGCGAAACAAAGATCATAATGCAACACCCTT 1449 |||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| Sbjct 668 ACAAGATCACAGTTCCAATCGTTTTGATTCGCAAAACAAAGATCATAATGCAACACCCTT 727 Query 1450 TACCAGGCCAGCATCAAGCTTCAAACGTAATTCTCCTGTACCGAGACATAAATCTCAAGC 1509 ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| ||||| Sbjct 728 TACCAGGCCAGCATCAAGCTTCAGACGCAATTCGCCTGTACCAAGACATAAATCCCAAGC 787 Query 1510 CAGTTATTCTAGTGAGGCCATTTTTGATGAAGCTTCAAGTTACAGTGTGACTTGGACCCA 1569 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 788 CAGTTATTCTAGTGAGGCCATTTTTGATCAAGCTTCAAGTTACAGTGTGACTTGGACCCA 847 Query 1570 GAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGC 1629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 848 GAAAAAGGATCAAGTAGAGTCGCGTGATGAACCTGAATACGAGCCTGAGCCTGAGTCTGC 907 Query 1630 AGCTGAGTATGATGAACCTGAACCTGAG---GC---TGAGTATGA--A-CCTGAATCTGA 1680 ||||||||||||||||||||| |||||| || ||||||||| | |||||| |||| Sbjct 908 AGCTGAGTATGATGAACCTGAGCCTGAGTCTGCAGCTGAGTATGATGAACCTGAACCTGA 967 Query 1681 ACC--AG-A--ACT-TG---CT-A--------TT-CT---CGA-AT-CAGTGTCAGAGCT 1716 | || | | | || || | || || | | || ||||||||||||| Sbjct 968 GGCTGAGTATGAATCTGAATCTGAACCAGGACTTGCTATTCTAGATTCAGTGTCAGAGCT 1027 Query 1717 GAAACTAGAGTCGTTTTACCAAGAGGAAGATGAAGATGA-G-G-AGGATCATAACTTCGT 1773 |||| ||| ||||||||||||||||| ||||||||||| | | |||||||| || ||| Sbjct 1028 AAAACCAGAATCGTTTTACCAAGAGGAGGATGAAGATGAAGAGGAGGATCATGACGCCGT 1087 Query 1774 TATAGATGAGTTATCAGATGATGACGAGTCTCTCAATACCGACTACCGAGGAAGAGACTG 1833 | |||||||||||||||||||||||||||||||| ||| | | |||||||| |||| Sbjct 1088 TGTAGATGAGTTATCAGATGATGACGAGTCTCTCGATA-----T-C-GAGGAAGAAACTG 1140 Query 1834 CGAAAGACGAAGATTTGAGTGCACTGAAGTTGGTAGAACTTAGAGCCATAGCAAAATCAA 1893 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1141 CGAAAGACGAAGATTTGAGTGCACTGAAGTTTGTAGAACTTAGAGCCATAGCAAAAACAA 1200 Query 1894 GAGGACTCAAAG-GAATTTCAAAGATGAAGAAAGTTGAGCTAGTGACTTTATTGGGTAGT 1952 ||||||| |||| || |||||||||| ||||||| ||| ||| ||| ||||||||||||| Sbjct 1201 GAGGACTTAAAGTGA-TTTCAAAGATAAAGAAAGCTGATCTACTGAATTTATTGGGTAGT 1259 Query 1953 AGTAATAAAGCATGATGATCAGATTTTTAACATGA 1987 | ||||||| |||||||||||||||| ||||||| Sbjct 1260 AATAATAAATCATGATGATCAGATTT--AACATGA 1292 Score = 228 bits (123), Expect = 1e-58 Identities = 129/132 (98%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1020 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GCCATAGGAGAAATAATCCTGATTTCTCAAGAAACAATAAGCATGGTTTCCGAGGCAGAA 294 Query 1080 ACAGGCGAAACGAAGATAAGGATGGTTTAGTAGATGGTGGTCTTGAAGACGACATGTTGT 1139 |||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| Sbjct 295 ACAGGCGAAACGAAGATAGGGATGGTTTAGTAGATGGTGGTCTCGAAGACGACATTTTGT 354 Query 1140 CTTCCAAAAACG 1151 |||||||||||| Sbjct 355 CTTCCAAAAACG 366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77056565635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5