BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31230.1
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482050 jgi|Araly1|482050|fgenesh2_kg.4__1110__AT2G31230.1 1219 0.0
> Ahg482050 jgi|Araly1|482050|fgenesh2_kg.4__1110__AT2G31230.1
Length=830
Score = 1219 bits (660), Expect = 0.0
Identities = 761/810 (94%), Gaps = 5/810 (1%)
Strand=Plus/Plus
Query 45 aaaaaaaaaaaaaaaaaaaaaCTTATGGAATATTCCCAATCTTCCATGTATTCATCTCCA 104
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 25 AAAAGAAAAAAAAAAAAAACACTCATGGAATATTCCCAATCTTCCATGTATTCTTCTCCG 84
Query 105 AGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGCTGTTTCTTGGATCAA 164
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 85 AGTTCTTGGAGCTCATCACAAGAATCACTCTTATGGAACGAGAGTTGTTTCTTGGATCAA 144
Query 165 TCATCTGAACCTCAAGCCTTCTTTTGCCCTAATTATGATTACTCCGATGACTTTTTCTCA 224
|| ||||| |||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 145 TCTTCTGATCCTCAATCGTTCTTTTGCCCTAATTATGCTTACTCCGATGACTTTTTCTCA 204
Query 225 TTTGAGTCACCGGAGATGATGATTAAGGAAGAAATTCAAAACGGCGACGTTTCTAACTCC 284
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||
Sbjct 205 TTTGAGTCACCGGAGATGATGAGTAAGGAAGAAATCCAAAACGGTGACGTTTCTAACTCC 264
Query 285 GAAGAAGAAGAAAAGGTTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGG 344
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GAGGAGGAAGAAAAGATTGGAATTGATGAAGAAAGATCATACAGAGGAGTGAGGAAAAGG 324
Query 345 CCGTGGGGGAAATTTGCAGCGGAGATAAGAGATTCAACGAGGAATGGAATTAGGGTTTGG 404
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 325 CCGTGGGGGAAATTTGCAGCGGAGATAAGAGATTCAACGAGGAACGGAATTAGGGTTTGG 384
Query 405 CTCGGGACATTTGACAAAGCCGAGGAAGCCGCTCTTGCTTATGATCAAGCGGCTTTCGCC 464
||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 385 CTCGGGACATTCGACAAAGCTGAGGAAGCCGCCCTTGCTTATGATCAAGCGGCTTTTGCC 444
Query 465 ACAAAAGGATCTCTTGCAACACTTAATTTCCCGGTGGAAGTGGTTAGAGAGTCGCTAAAG 524
|| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 445 ACGAAAGGATCTCTAGCAACACTCAATTTCCCCGTGGAAGTGGTTAGAGAGTCGCTAAAG 504
Query 525 AAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTATGGCCTTGAAGAGAAAA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 AAAATGGAGAATGTGAATCTTCATGATGGAGGATCTCCGGTTATGGCCTTGAAGAGAAAA 564
Query 585 CATTCTCTTCGAAACCGGCCTAGAGGGAAAAAGCGATCCtcttcttcttcttcttcttct 644
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 565 CATTCGCTTCGAAACCGGCCTAGAGGGAAAAAGAGATCTTCTTCTTCTTCTTCTTCTAAT 624
Query 645 tctaattcttcttcttgctcttcttcttcgt-ctacttcttcAACATCAAGAAGTAGTAG 703
||| |||||| || | ||||| ||| || | || | |||||||||||||| | |||||
Sbjct 625 TCTTCTTCTTCGTCGTCCTCTTATTCGTCATCCT-CGTCTTCAACATCAAG-A--AGTAG 680
Query 704 TAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGC 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TAAGCAGAGTGTTGTGAAGCAAGAAAGTGGTACACTTGTGGTTTTTGAAGATTTAGGTGC 740
Query 764 TGAGTATTTAGAACAACTTCTTATGAGCTCATGTTGATCTTGTAATTGATTTCAGCAAAA 823
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||
Sbjct 741 TGAGTATTTAGAACAACTTCTTATGAGCTCATGTTGATCTGGTAATTAATTTCAGCTAAA 800
Query 824 GCCACTATTAAACTTTAATTTTGTGATAAT 853
|| |||||||||||||||||||||||||||
Sbjct 801 GCTACTATTAAACTTTAATTTTGTGATAAT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5