BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31280.3 Length=3043 Score E Sequences producing significant alignments: (Bits) Value Ahg900935 jgi|Araly1|900935|Al_scaffold_0004_1585 3219 0.0 Ahg311694 jgi|Araly1|311694|fgenesh1_pm.C_scaffold_1000474 981 0.0 > Ahg900935 jgi|Araly1|900935|Al_scaffold_0004_1585 Length=2163 Score = 3219 bits (1743), Expect = 0.0 Identities = 1966/2077 (95%), Gaps = 2/2077 (0%) Strand=Plus/Plus Query 592 ATGGGTTCTACTTCTCAAGAGATACTGAAGAGCTTTTGCTTTAACACGGACTGGGACTAT 651 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| Sbjct 1 ATGGGTTCTACTTCTCAAGAGATACTGAGGAGCTTTTGCTCTAACACGGACTGGAACTAT 60 Query 652 GCTGTGTTCTGGCAACTTAATCATCGAGGATCTCGAATGGTACTTACCTTGGAGGATGCT 711 |||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 61 GCTGTGTTCTGGCAACTTAAACACCAAGGATCTCGAATGGTACTTACCTTGGAGGATGCT 120 Query 712 TACTATGACCATCATGGGACGAATATGCATGGAGCACATGACCCCCTTGGGTTAGCTGTG 771 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 TACTATGACCATCATGGGACGAATATTCATGGAGCACATGACCCCCTTGGGTTAGCTGTG 180 Query 772 GCAAAGATGTCTTATCATGTCTATTCTCTAGGGGAAGGGATTGTAGGACAAGTTGCAGTT 831 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 GCAAAGATGTCTTATCATGTCTATTCTCTAGGGGAAGGGATTGTAGGACAAGTCGCAGTT 240 Query 832 TCTGGAGAACACCAATGGGTATTTCCCGAAAATTATAACAACTGTAACTCAGCATTTGAG 891 ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| Sbjct 241 TCTGGAGAACACCAATGGGTATTCCCCGAAAATTATGACAACTGTCACTCAGCATTTGAG 300 Query 892 TTTCATAACGTTTGGGAAAGTCAAATTTCTGCTGGAATTAAGACCATTCTTGTAGTAGCT 951 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTTCATAACGTTTGGGAGAGTCAAATTTCTGCTGGAATTAAGACCATTCTTGTAGTAGCT 360 Query 952 GTTGGTCCATGTGGAGTTGTTCAGCTAGGCTCTTTGTGTAAAGTTAATGAAGATGTGAAT 1011 ||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTGGTCGATATGGAGTAGTGCAGCTAGGCTCTTTGTGTAAAGTTAATGAAGATGTGAAT 420 Query 1012 TTTGTGAATCATATCCGACATTTATTTCTGGCACTTAGGGATCCATTGGCAGACCATGCA 1071 || ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 TTGGTGAATCATATGCGACATTTATTTCTGGCACTTAGGGATCCATTGGCAGATCATGCA 480 Query 1072 GCAAATTTAAGGCAATGTAATATGAACAATTCGTTATGTCTGCCAAAAATGCCTTCTGAA 1131 |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 481 GCAAATTTAATGCAATGTAATATGAACAATTCGTTGTGTCTGCCAAATATGCCTTCTGAA 540 Query 1132 GGTTTACATGCTGAGGCTTTCCCTGATTGCTCTGGAGAAGTTGACAAAGCTATGGACGTG 1191 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 541 GGCTTACATGCCGAGGCTTTCCCTGATTGCTCTGGAGAAGTTGACAAAGCTATGGATGTG 600 Query 1192 GAAGAGTCCAATATTCTAACTCAATACAAAACTAGAAGAAGTGATAGCATGCCTTACAAT 1251 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GAAGAATCCAATATTTTAACTCAATACAAAACTAGAAGAAGTGATAGCATGCCTTACAAT 660 Query 1252 ACTCCTTCGTCATGTCTTGTCATGGAGAAGGCAGCCCAAGTTGTTGGTGGTCGTGAAGTT 1311 |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 661 ACTCCTTCGTCATGTCTTGTCATGGAGAAGACAGCTCAAGTTGTTGGTGGTCGTGAAGTG 720 Query 1312 GTGCAAGGATCTACTTGTGGGAGTTATAGTGGTGTTACGTTTGGCTTTCCAGTTGACTTG 1371 |||||||||||||| |||||||| ||||| |||||||| | ||||||||||||||||||| Sbjct 721 GTGCAAGGATCTACGTGTGGGAGCTATAGCGGTGTTACATGTGGCTTTCCAGTTGACTTG 780 Query 1372 GTTGGTGCCAAACATGAGAATCAAGTAGGTACTAATATAATCAGGGATGCACCTCATGTG 1431 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 781 GTTGGTGCCAAACATGAGAATCAAGTAGGTACAAATATAATCAGTGATGCACCTCATGTG 840 Query 1432 GGAATGACTAGTGGCTGCAAAGATTCAAG-GGATTTAGATCCTAATTTACATCTGTATAT 1490 |||||||||||||||||||||||| |||| ||||| |||||||||||| ||| |||||| Sbjct 841 GGAATGACTAGTGGCTGCAAAGATCCAAGAGGATT-AGATCCTAATTTTCATAAGTATAT 899 Query 1491 GAAGAATCATGTGCTCAATGATACAAGCACATCTGCTTTAGCAATTGAGGCTGAAAGATT 1550 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 900 GAAGAATCATGTGCTCAATAATACAAGCTCATCTGCTTTAGCAATTGAGGCTGAAAGATT 959 Query 1551 GATAACAAGCCAATCATATCCACGCCTGGACTCAACTTTTCAGGCTACCTCGAGAACAGA 1610 ||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||| Sbjct 960 GATAACAGGCCAATCATATCCAGGCCTGGACTCAACTCTTCAGGCTATGTCGAGAACAGA 1019 Query 1611 TAAAGAAAGTTCTTACCATAATGAAGTGTTCCAACTATCTGAGAACCAAGGAAATAAATA 1670 ||||||||||||||| || || ||||| ||||||||||| |||||||| ||||||||| | Sbjct 1020 TAAAGAAAGTTCTTATCAAAACGAAGTATTCCAACTATCGGAGAACCACGGAAATAAAGA 1079 Query 1671 CATAAAAGAGACTGAGCGTATGCTGGGGAGGAACTGCGAGTCTAGTCAATTTGATGCTTT 1730 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1080 CATAAAAGAGACTGACCGTATGCTGGGGAGGAACTGCGAGTCTAGTCGATTTGATGCTTT 1139 Query 1731 GATCTCATCTGGGTATACTTTTGCTGGCAGCGAGCTACTAGAAGCGTTAGGCTCTGCTTT 1790 ||| |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1140 GATGTCATCTGGTTATACTTTTGGTGGCAGCGAGCTACTAGAGGCGTTAGGCTCTGCTTT 1199 Query 1791 CAAGCAAACGAACACTGGTCAGGAGGAGCTACTGAAGTCTGAACATGGTTCAACAATGAG 1850 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CAAGCAAGCGAGCACTGGTCAGGAGGAGCTACTGAAGTCTGAACATGGTTCAACAATGAG 1259 Query 1851 ACCAACAGACGATATGAGTCATAGCCAGCTCACGTTTGACCCTGGCCCTGAGAATCTTCT 1910 ||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||||| Sbjct 1260 ACCAACAGATGATATGAGTCATAGCCAGCTGACATTTGACTCTGGCCCTGAGAATCTTCT 1319 Query 1911 AGATGCTGTGGTTGCTAATGTGTGTCAAAGAGATGGTAATGCGAGGGATGATATGATGTC 1970 |||||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||| Sbjct 1320 AGATGCTGTGGTTGCTAATGTGTGTCAAAGCGATGGTAATTCCAGGGATGATATGTTGTC 1379 Query 1971 GAGCAGATCGGTACAATCATTGCTTACTAACATGGAACTGGCAGAACCCTCAGGTCAGAA 2030 ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| || Sbjct 1380 GAGCAGATCGGTACAATCATTGCTTACCAGCATGGAACTTGCAGAACCCTCAGGTCAAAA 1439 Query 2031 GAAGCATAATATTGTTAACCCAATTAATAGTGCTATGAATCAGCCACCAATGGCAGAGGT 2090 |||||||||||||||| |||||||| |||||||||||||||||| |||| | |||||||| Sbjct 1440 GAAGCATAATATTGTTTACCCAATTGATAGTGCTATGAATCAGCTACCACTTGCAGAGGT 1499 Query 2091 GGATACCCAACAAAATTCATCAGATATTTGTGGAGCGTTTTCTTCAATTGGATTCTCATC 2150 ||||| ||||||||||||||||||||| |||||||| |||||||| ||||| |||||||| Sbjct 1500 GGATATCCAACAAAATTCATCAGATATCTGTGGAGCATTTTCTTCGATTGGGTTCTCATC 1559 Query 2151 TACGTACCCCAGCTCCTCTAGTGATCAGTTTCAGACATCCCTGGACATACCCAAGAAGAA 2210 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1560 TACGTATCCCAGCTCCTCTAGTGATCAGTTTCAGACATCCCTGGACATGCCCAAGAAGAA 1619 Query 2211 CAAAAAGAGGGCCAAACCTGGTGAAAGTTCTCGACCTCGCCCAAGAGACAGGCAACTTAT 2270 ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1620 CAAAAAGAGGGCCAAGCCTGGTGAAAGTTCTCGACCTCGCCCAAGAGACAGACAACTCAT 1679 Query 2271 TCAAGATCGAATCAAGGAACTTAGAGAACTTGTGCCTAATGGATCTAAGTGCAGTATCGA 2330 ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 1680 TCAGGATCGAATCAAGGAACTTAGAGAACTTGTACCTAATGGAGCTAAGTGCAGTATTGA 1739 Query 2331 TTCTTTGCTAGAACGAACGATCAAACACATGCTCTTTTTGCAGAATGTTACTAAGCATGC 2390 ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1740 TTCTTTGCTCGAACGCACGATCAAGCACATGCTCTTTTTGCAGAATGTTACTAAGCATGC 1799 Query 2391 TGAAAAGCTCAGTAAAAGTGCTAATGAAAAGATGCAACAAAAGGAAACTGGTATGCAAGG 2450 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1800 TGACAAGCTCAGTAAAAGTGCTAATGCAAAGATGCAACAAAAGGAAACTGGTATGCAAGG 1859 Query 2451 TTCAAGCTGCGCAGTGGAGGTTGGAGGTCATCTTCAAGTAAGCTCGATCATCGTGGAGAA 2510 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1860 TTCAAGCTGCGCAGTGGAGGTTGGAGGCCATCTTCAAGTATGCTCGATCATCGTGGAGAA 1919 Query 2511 TCTGAACAAGCAGGGGATGGTGCTTATCGAGATGTTATGTGAAGAATGTGGCCATTTTCT 2570 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1920 TCTGAACAAGCAGGGGATGGTGCTCATCGAGATGTTATGTGAAGAATGTAGCCATTTTCT 1979 Query 2571 TGAGATAGCAAACGTCATAAGGAGCTTAGACCTCGTCATCCTAAGAGGTTTCACCGAGAC 2630 ||||||||||||||| || ||||||||||||||| ||||| ||||||| |||||||||| Sbjct 1980 TGAGATAGCAAACGTGATTAGGAGCTTAGACCTCATCATCTTAAGAGGAATCACCGAGAC 2039 Query 2631 TCAGGGCGAGAAAACATGGATATGCTTTGTAACTGAG 2667 ||||||||||||||||||||||||||||||||||||| Sbjct 2040 TCAGGGCGAGAAAACATGGATATGCTTTGTAACTGAG 2076 Score = 141 bits (76), Expect = 3e-32 Identities = 76/76 (100%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2719 AGCCAAAACAGCAAAGTAATGCAGAGGATGGACATTTTGTGGTCTCTGGTGCAAATATTT 2778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2077 AGCCAAAACAGCAAAGTAATGCAGAGGATGGACATTTTGTGGTCTCTGGTGCAAATATTT 2136 Query 2779 CAACCAAAGGCCAATG 2794 |||||||||||||||| Sbjct 2137 CAACCAAAGGCCAATG 2152 > Ahg311694 jgi|Araly1|311694|fgenesh1_pm.C_scaffold_1000474 Length=3990 Score = 981 bits (531), Expect = 0.0 Identities = 1534/2001 (77%), Gaps = 138/2001 (7%) Strand=Plus/Plus Query 745 GCACATGACCCCCTTGGGTTAGCTGTGGCAAAGATGTCTTATCATGT-CTATTCTCTAGG 803 |||||||| |||||||||||||||||||| |||||||| |||||||| | | ||||| || Sbjct 175 GCACATGATCCCCTTGGGTTAGCTGTGGCTAAGATGTCATATCATGTAC-ACTCTCTTGG 233 Query 804 GGAAGGGATTGTAGGACAAGTTGCAGTTTCTGGAGAACACCAATGGGTAT-TTC-CCGAA 861 |||||||| |||||||||||| ||| | |||||| |||| |||| || || ||| | ||| Sbjct 234 GGAAGGGACTGTAGGACAAGTGGCAATCTCTGGACAACATCAAT-GG-ATCTTCTCTGAA 291 Query 862 AATTAT-AACAACTGTAAC-TCAG-CATTTGAGTTTCATAACGTTTGGGAAAGTCAAATT 918 ||| | || ||| | | || | || || || |||| |||| ||||| ||||||||| Sbjct 292 TATT-TGAATGACTCT-CCTTC-GACACTTCAGGTTCACAACGGCTGGGAGAGTCAAATT 348 Query 919 TCTGCTGGAATTAAGACCATTCTTGTAGTAGCTGTTGGTCCATGTGGAGTTGTTCAGCTA 978 ||||||||||||||||| |||||| |||||||||||||| | ||||||||||| ||||| Sbjct 349 TCTGCTGGAATTAAGACTATTCTTATAGTAGCTGTTGGTTCTTGTGGAGTTGTGCAGCTT 408 Query 979 GGCTCTTTGTGTAAAGTT-AATGAAGATGTGAATTTTGTGAATCATATCCGACATTTATT 1037 |||||||||||||||||| || ||||| | ||| |||| ||||||| | ||||| || Sbjct 409 GGCTCTTTGTGTAAAGTTGAA-GAAGACCCGGCTTTGGTGACTCATATCAGGCATTTGTT 467 Query 1038 TCTGGCACTTAGGGATCCATTGGCAGACCATGCAGCAAATTTAAG-GCAATGTAATATGA 1096 | ||||||||| ||||||| |||||||||||||| |||| || || || |||| |||| | Sbjct 468 TTTGGCACTTAAGGATCCACTGGCAGACCATGCATCAAA-TTCAGTGCGATGTGATATTA 526 Query 1097 ACAATTCGTTATG-TCTGCCAAAAATGCCTTCTGAAGGTTTACATGCTGAGGCTTTCCCT 1155 || | || | | |||||||| || ||||| || | ||||| | ||||| |||||| Sbjct 527 AC-AGTCCATCGGATCTGCCAACTATACCTTCCAAATGCTTACA--C-GAGGCATTCCCT 582 Query 1156 GATTGCTCTGGAGAAGTTGACAAAGCTATGGACGTGGAAGAGTCCAATATTCTAACTCAA 1215 |||| ||| |||||| |||||||||||||||| ||| || || |||||| || ||||| Sbjct 583 GATTTCTCAGGAGAATTTGACAAAGCTATGGATATGGGAGGGTTAAATATTGTATCTCAA 642 Query 1216 TACAAAACTAGA-AGAAGTGATAG-CATGCCTTACAA--T-ACTCCTTCGTCATGTCTTG 1270 ||| || || | |||||||| | | | || ||||| | ||||| | | |||| | Sbjct 643 AACACAAGTA-ATAGAAGTGA-CGACCTTCCATACAATTTCACTCCAACAT-ATGT-TCA 698 Query 1271 TCATGGAGAAGG-CAGCCCAAGTTGTTGGTGGTCGTGAAGTTGTGCAAGGATCTACT-TG 1328 | |||||| ||| | || ||||| ||||||| | ||||| || ||| || | | | Sbjct 699 T-ATGGAG-AGGACTGCTCAAGTAATTGGTGGGCTTGAAGCAGTCCAACCTTCCA-TGTT 755 Query 1329 TGGGAGTTA-TAGTGGTGTTACGTTTGGCTTTCCAGTTGACT-TGGTTGGTGCCAAACAT 1386 ||| || | || | ||||||| ||| ||| ||||||| | |||||| ||| ||||| Sbjct 756 TGGAAGCAATTA-TTGTGTTACAAGTGGTTTTTCAGTTGA-TGTGGTTGATGCTAAACAC 813 Query 1387 GAGAATCAAGTAGGTACT-AAT-ATAATCAGGGATGCACCTCATG-TG-GGAATGACTAG 1442 ||||||||||| |||| | ||| || || || | | | | ||| || |||| ||| | Sbjct 814 GAGAATCAAGTGGGTA-TAAATGAT-ATGAGTAAGGTAATTTATGATGAGGAA--ACTGG 869 Query 1443 TGGCTGCAAAGATTCAAGGGATTTAGATCCTAATTTACATCTGTATAT-GAAG-AATCAT 1500 ||| | | | | ||||| || | |||||||||||| || | ||| | | || |||||| Sbjct 870 TGGATACCGATACTCAAGAGAATCAGATCCTAATTTCCAACAGTA-CTCG-AGAAATCAT 927 Query 1501 GTGC-TCAATGA-TACAAGCACATCTGCTTTAGCAATTG-AGGCTGAAAGATTGATAA-C 1556 ||| | ||| | | || || ||||||||||||||| || || |||| || | | || | Sbjct 928 CTGCGT-AAT-AGTGCAGGCTCATCTGCTTTAGCAA-TGAAGACTGATAGGCT-AAAAGC 983 Query 1557 AAG-CCAATCATATCCACGCCTGGACTCAACTTTTC-AGGCTACCTCGAGAACAGATAAA 1614 | | || ||||||||||| || || ||| || ||| | || | | | |||||||||| Sbjct 984 AGGTCC-ATCATATCCACAACTTGATTCACCTGTTCTA-ACTGCGTTAATAACAGATAAA 1041 Query 1615 GA-AAGTTCTTA-CCATAATGAAGTGTTCCAACTATCTGAGAACCAAGGAAATAAATACA 1672 || | |||| | | | ||||| || ||||||| |||||||| |||||||| || || Sbjct 1042 GATTA-TTCTCATCGA-AATGAGGTTTTCCAACCATCTGAGAGCCAAGGAAGTATGTATG 1099 Query 1673 TAAAAGAGACTGAGCGTATGCTGGGGAGGAACTGCGAGTCTAGTCAATTTGATGCTTTGA 1732 | ||||| || || | || || || || || | ||||| |||| || |||||||| | Sbjct 1100 TGAAAGATACAGAACATAGGCAGGAGAAAAAAAGTGAGTCAAGTCGGTTGGATGCTTT-A 1158 Query 1733 TCT-CATCTGGGTATACTTTTGCTGGCAGCGAGCTACTAGAAGCGTTA-GGCTCTGCTTT 1790 || ||||| || | ||||| ||||||| ||||| ||||| || ||| ||| | ||||| Sbjct 1159 ACTGCATCTTTGTCTTCTTTTTCTGGCAGTGAGCTGCTAGAGGCATTAGGGC-CAGCTTT 1217 Query 1791 CAAG-CAAACGAACACTGGTCAGGAGGAGCTA-CTGAAGTCTGAA-CATGGTTCAACAAT 1847 | || |||||| ||||||| | || |||||| | |||| |||| | || | || | || Sbjct 1218 C-AGTAAAACGAGCACTGGTTATGAAGAGCTAGC-AAAGTTTGAATC-TGCTGCAGCTAT 1274 Query 1848 GAGACCAACAGACGATATGAGTCATAGCCAGCTCACGTTTGAC-CCTGGCCCTGAGAATC 1906 |||| |||| | |||||||| ||||| || || || |||||| || |||| ||||||| Sbjct 1275 AAGACGAACAAATGATATGAGCCATAGTCACCTGACATTTGACTCC-AGCCCCGAGAATC 1333 Query 1907 TTCTAGATGCTGTGGTTGCTAATGTGTGTCAA-AGAGATGGTAATG-CGAGG-GATGATA 1963 |||||||||| || ||||||| | || || || | |||||||||| | ||| | ||| | Sbjct 1334 TTCTAGATGCCGTTGTTGCTAGTATGAGT-AATGGTGATGGTAATGTC-AGGCG-TGAAA 1390 Query 1964 TGAT-GTCGAGCAGATC-GGTACAATCATTGCTT---A---CT-AACATGGAACTGGCAG 2014 | || ||| || || || | || ||||| ||| | || || |||| | ||||| Sbjct 1391 T-ATCGTCAAGTAGGTCAACT-CAGTCATTACTTACAACTGCTCAA-ATGGCAGAGGCAG 1447 Query 2015 AACCCTCAGGTCAGAAGAAGCATAA-TATTGTTAACCCAATTAATAGTGCT-ATGAATCA 2072 |||| | ||||| || ||||| || | |||||| | || || |||||| | || | || Sbjct 1448 AACCTTTTGGTCATAATAAGCA-AAGTCTTGTTAGCACAGTTGATAGTG-TGATTAGCCA 1505 Query 2073 GCCACCAAT-GGCAGAGGTGG-ATACCCAACAAAATTCATCAGATATTTGTGGAGCGTTT 2130 ||| || | ||||||| || || || ||| ||| ||||| |||| |||||||| ||| Sbjct 1506 GCCGCC-TTCAGCAGAGG-GGCGTATCCTACAGAATCCATCAAATATCTGTGGAGCATTT 1563 Query 2131 TCTTCAATTGGATTCTCATCTACGTACCCCAGCTCCTCTAGTGATCAGTTTCAGACATCC 2190 ||||| ||||| || ||||| || | | ||| || || || || ||||||| ||| ||| Sbjct 1564 TCTTCCATTGGGTTTTCATCAACATGTCTCAGTTCATCCAGCGACCAGTTTCCGACGTCC 1623 Query 2191 CTGGACATACCCAAGAAGAACAAAAAGAGGGCCAAACCTGGTGAAAGTTCTCGACCTCGC 2250 ||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 1624 CTGGAAATTCCCAAGAAGAACAAAAAGAGAGCTAAACCTGGTGAAAGTTCTCGGCCTCGT 1683 Query 2251 CCAAGAGACAGGCAACTTATTCAAGATCGAATCAAGGAACTTAGAGAACTTGTGCCTAAT 2310 ||||| ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||| Sbjct 1684 CCAAGGGACAGGCAACTTATTCAGGATCGTATCAAAGAACTAAGGGAGCTTGTGCCTAAT 1743 Query 2311 GGATCTAAGTGCAGTATCGATTCTTTGCTAGAACGAACGATCAAACACATGCTCTTTTTG 2370 ||||||||||||||||| |||||||||||||| | |||||||| |||||||||||| || Sbjct 1744 GGATCTAAGTGCAGTATTGATTCTTTGCTAGAGTGCACGATCAAGCACATGCTCTTTCTG 1803 Query 2371 CAGAATGT-TACTAAGCATGCTGAAAAGCTCAGTAAAAGTGCTAA-TGAAAAGATGCAAC 2428 |||||||| | |||||||||| || ||||||| ||||||||| || | ||||||||| | Sbjct 1804 CAGAATGTCT-CTAAGCATGCCGACAAGCTCACTAAAAGTGC-AAGTTCAAAGATGCAGC 1861 Query 2429 AAAAGGA-AA---C----T-GG-T-AT---GCA--AG----G-------TTCAAGCTGCG 2461 | ||||| || | | || | || ||| || | ||| ||||| | Sbjct 1862 ACAAGGATAATGGCACCCTAGGATCATCTAGCACTAGCACTGAACAAGGTTCGAGCTGGG 1921 Query 2462 CAGTGGAGGTTGGAGGTCATCTTCAAGTAAGCTCGATCATCGTGGAGAATCTGAACAA-G 2520 |||||||| ||||||| ||||||||||| | || ||||| |||||||||||| |||| | Sbjct 1922 CAGTGGAGATTGGAGGCCATCTTCAAGTGTGTTCAATCATGGTGGAGAATCTGGACAAAG 1981 Query 2521 CAGGGGATGGTGCTTATCGAGATGTTATGTGAAGAATGTGGCCATTTTCTTGAGATAGCA 2580 ||| | || ||||||||||||||||||| ||||||||| |||| ||||| ||||||||| Sbjct 1982 AAGGAG-TGATGCTTATCGAGATGTTATGCGAAGAATGTAGCCACTTTCTCGAGATAGCA 2040 Query 2581 AACGTCATAAGGAGCTTAGACCTCGTCATCCTAAGAGGTTTCACCGAGACTCAGGGCGAG 2640 ||||| ||||||||||| || || ||||||| ||||| |||| |||| || |||||| Sbjct 2041 AACGTGATAAGGAGCTTGGAACTTATCATCCTCAGAGGCATCACTGAGAAACAAGGCGAG 2100 Query 2641 AAAACATGGATATGCTTTGTA 2661 ||||||||||||||||||||| Sbjct 2101 AAAACATGGATATGCTTTGTA 2121 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114918269165 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5