BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G31380.1

Length=1125
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1        1439    0.0  
  Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1          342    3e-93
  Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1        69.4    5e-11


> Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1
Length=1064

 Score = 1439 bits (779),  Expect = 0.0
 Identities = 1003/1103 (91%), Gaps = 47/1103 (4%)
 Strand=Plus/Plus

Query  29    CCTTCTTATCTTCTTCTCTTCTCCTCAACTTGAATACACAGAAACAAAACTGCTTTTGTC  88
             |||||||||||||||||||||| | |||  | | | ||||||||||||||||||||||||
Sbjct  1     CCTTCTTATCTTCTTCTCTTCT-C-CAA--TCACT-CACAGAAACAAAACTGCTTTTGTC  55

Query  89    TCTCAAGTCATTTGTCTTATAAAAAGGTTCTGTTCTTGAACAAGGGAAAG-AAACAAAAG  147
             ||||||||| |||||||| |||||||||| |||||||||||||| | ||| |||||| ||
Sbjct  56    TCTCAAGTCCTTTGTCTTTTAAAAAGGTTTTGTTCTTGAACAAGAG-AAGAAAACAAGAG  114

Query  148   GCTGATAACTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCTTACTTCTCAGGAAAAC  207
             ||||||   ||||||||||||||||||||||||||||||||||  |||||||| |     
Sbjct  115   GCTGAT-TTTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCCCACTTCTCA-G-----  167

Query  208   CCTAAAGAAAATTTCTGtttttttttGAGAAATATGAAGATACAATGTGATGTGTGTGAG  267
                   | |||        |||||||||||||||||||||||||||||||||||||||||
Sbjct  168   ------G-AAA--------TTTTTTTGAGAAATATGAAGATACAATGTGATGTGTGTGAG  212

Query  268   AAAGCTCCGGCCACGCTTATATGTTGTGCTGATGAAGCTGCTCTCTGCGCTAAATGTGAC  327
             ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| 
Sbjct  213   AAAGCTCCGGCCACGCTTATATGTTGTGCCGATGAAGCTGCTCTGTGCGCTAAATGTGAT  272

Query  328   GTTGAGGTTCATGCTGCTAATAAACTCGCTAGCAAACACCAACGCCTTTTTCTTGACTCT  387
             |||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||
Sbjct  273   GTTGAGGTTCATGCTGCTAATAAGTTAGCTAGTAAACACCAACGCCTTTTTCTTGACTCT  332

Query  388   CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT  447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333   CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT  392

Query  448   GTAGAGGATAGGGCTCTGCTCTGCAGAGATTGCGATGAGGCGACCCATGCGCCAAATACT  507
             ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct  393   GTAGAGGATAGGGCTCTGCTCTGCAGAGACTGCGACGAGGCGACCCATGCACCAAATACT  452

Query  508   CGCTCTGCTAATCACCAGAGGTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT  567
             |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  453   CGCTCTGCTAATCACCAGCGTTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT  512

Query  568   AGTTGCAATCAAGAAGTGGAAAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT  627
             | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  513   ATTTGCAGTCAAGAAGTGGAGAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT  572

Query  628   AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC  687
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  573   AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC  632

Query  688   AGCTACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGGAGCTG  747
              |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct  633   CGCTACTCTGATCTTGAGTGCAGTAATAAGCAGAAAGAGCAACTCGACCTCGGGGAGCTG  692

Query  748   GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTA  807
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  693   GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGCA  752

Query  808   GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGCTCATTCCTACAACAGACCT  867
             |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  753   GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGTTCATTCCTACAATAGACCT  812

Query  868   ATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTTGAGTACCGGTATGATGATGAAGAA  927
             |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  813   ATGAAGTCCAATGTACCCAACAAGAAGCAGAGACTTGAGTACCGGTATGATGATGATGAA  872

Query  928   GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATGGATGAATCTAC-TAAGCT-TTA-T  984
             ||||||||||||||||||||||||||||||||||| |||||| |||  || ||  ||| |
Sbjct  873   GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATAGATGAA-CTAAATA-GCACTTAGT  930

Query  985   AAT-ATATAG-CACTTGATTCGC--ATAGTCTTCGGCTCTTCGCCTTGCTTTCTCCATGA  1040
                 |||| | | ||  |   ||  ||| | || |  | |||||||||||||||||||||
Sbjct  931   TCGCATAT-GTCTCTACACGGGCTCATA-TATT-GT-T-TTCGCCTTGCTTTCTCCATGA  985

Query  1041  TCTGATATGTGTATCACTGTAAGTAGCAGGCTAAAACTTGGAAAAACCTTATCATTTTAT  1100
             |||| | ||||||||||||||  || ||||||||||||||||||| ||||||||||||||
Sbjct  986   TCTGGTTTGTGTATCACTGTA--TA-CAGGCTAAAACTTGGAAAA-CCTTATCATTTTAT  1041

Query  1101  TAGCAAGTGAAGCCTTAAATTGC  1123
             |||||||||| ||||| ||||||
Sbjct  1042  TAGCAAGTGATGCCTTGAATTGC  1064


> Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1
Length=1094

 Score =  342 bits (185),  Expect = 3e-93
 Identities = 581/763 (76%), Gaps = 63/763 (8%)
 Strand=Plus/Plus

Query  241  ATGAAGATACAATGTGATGTGTGTGAGAAAGCTCCGGCCACGCTTATATGTTGTGCTGAT  300
            ||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| || 
Sbjct  165  ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATATGTTGTGCCGAC  224

Query  301  GAAGCTGCTCTCTG-CGCTAAATGTGACGTTGAGGTTCATGCTGCTAATAAACTCGCTAG  359
            |||||||||||||| | || | || ||||| ||| ||||||| ||||| |||||||||||
Sbjct  225  GAAGCTGCTCTCTGTC-CTCACTGCGACGTCGAGATTCATGCCGCTAACAAACTCGCTAG  283

Query  360  CAAACACCAACGCCTTTTTCTTGACTCTCTCTCAACTAAATTCCCTCCCTGCGACATCTG  419
            ||| |||||||| |||  |||| | |||||||| ||  |||||||||  ||||| |||||
Sbjct  284  CAAGCACCAACGTCTTCATCTTAATTCTCTCTCCACCGAATTCCCTCGTTGCGATATCTG  343

Query  420  CCTTGAGAAGGCAGCTTTCATATTCTGTGTAGAGGATAGGGCTCTGCTCTGCAGAGATTG  479
            ||  ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||
Sbjct  344  CCAAGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTG  403

Query  480  CGATGAGGCGACCCATG-CGCCAAATACTCGCTCTGCTAATCACCAGAGGTTCTTAGCCA  538
            ||||||  | | ||| |  | | ||| |||| ||||||||||||||||||||||||||||
Sbjct  404  CGATGAATCCATCCACGTTG-CTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCA  462

Query  539  CTGGAATCCGAGTTGCTCTTAGTTCCACTAGTTGCAATCAAGAAGTGGAAAAGAATCA-C  597
            |||| |||  ||| ||||| |  || || || |||||| ||||| |||| ||||| || |
Sbjct  463  CTGGGATCAAAGTAGCTCTGACCTCAACGAGCTGCAATAAAGAAATGGAGAAGAACCAAC  522

Query  598  -T-----TTG-A-C--CCATCTAAT-C--AG-CAGAGTCTCT-CTAAA-CCGCCAA-CT-  639
             |     ||  | |  ||| | ||  |  |  |||| || |  ||||| || |||| |  
Sbjct  523  CTGAGCCTTCCAACAACCAACAAAAACCTAATCAGATTC-CGGCTAAATCC-CCAAGCCA  580

Query  640  -CAGCAACC-CGCTGCTCCA--T-CTCCT-TT--GTGGGCTACCGATGAATTCTTC-AGC  690
             |||||||  | || || ||  | ||||  ||  |||||||   || || |||||| | |
Sbjct  581  GCAGCAACAAC-CTTCTTCAGCTACTCCGCTTCCGTGGGCTGTTGACGATTTCTTCCA-C  638

Query  691  TACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGG-AGC----  745
            | ||| ||| | || | || | || || | || | ||| || |||||||||| ||     
Sbjct  639  TTCTCCGATATCGAATCCACTGATCAG-A-AAGG-GCAGCTTGATCTCGGGGCAGGGGAG  695

Query  746  T-GGATTGGCTTGCAGAGATGGG-TCTGTTTGGTGACCAGCCTGATCA-AGAGGCTCTAC  802
            | ||||||| || |||| ||||| | | || ||||| ||   | |||| | ||||||| |
Sbjct  696  TTGGATTGGTTTTCAGACATGGGAT-TCTTCGGTGATCAAATTAATCACA-AGGCTCTTC  753

Query  803  CGGTAGCCGAAGTTCCCGAGCTTTCCT-TTTCACATTT-GGCTCATGCTCATTCCTACAA  860
            | | ||| |||||||| |||||||| | |||| ||||| || ||||| |||||| |||||
Sbjct  754  CTGCAGCTGAAGTTCCTGAGCTTTC-TGTTTCGCATTTAGG-TCATGTTCATTCATACAA  811

Query  861  CAGACCTATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTT-GAGTACC-G-G-T-AT  915
             |  || |||||||| |||||  || ||||||||| |||| |  ||| | | | | | ||
Sbjct  812  -AC-CC-ATGAAGTCGAATGTTTCCTACAAGAAGCCGAGG-TACGAG-ATCAGAGATGAT  866

Query  916  GATGATGAAGAAGAGCACTTCCTAGTCCCCGACCTAGGCTAAA  958
            |||||||| || ||||||||  | ||||| || || |||||||
Sbjct  867  GATGATGATGAGGAGCACTTTATTGTCCCTGATCTTGGCTAAA  909


> Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1
Length=1239

 Score = 69.4 bits (37),  Expect = 5e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1083  AAAACCTTATCATTTTATTAGCAAGTGAAGCCTTAAATTGCAA  1125
             |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct  1239  AAAACCTTATCATTTTATTAGCAAGTGATGCCTTGAATTGCAA  1197



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41935208700


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5