BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31380.1 Length=1125 Score E Sequences producing significant alignments: (Bits) Value Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1 1439 0.0 Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1 342 3e-93 Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 69.4 5e-11 > Ahg482070 jgi|Araly1|482070|fgenesh2_kg.4__1130__AT2G31380.1 Length=1064 Score = 1439 bits (779), Expect = 0.0 Identities = 1003/1103 (91%), Gaps = 47/1103 (4%) Strand=Plus/Plus Query 29 CCTTCTTATCTTCTTCTCTTCTCCTCAACTTGAATACACAGAAACAAAACTGCTTTTGTC 88 |||||||||||||||||||||| | ||| | | | |||||||||||||||||||||||| Sbjct 1 CCTTCTTATCTTCTTCTCTTCT-C-CAA--TCACT-CACAGAAACAAAACTGCTTTTGTC 55 Query 89 TCTCAAGTCATTTGTCTTATAAAAAGGTTCTGTTCTTGAACAAGGGAAAG-AAACAAAAG 147 ||||||||| |||||||| |||||||||| |||||||||||||| | ||| |||||| || Sbjct 56 TCTCAAGTCCTTTGTCTTTTAAAAAGGTTTTGTTCTTGAACAAGAG-AAGAAAACAAGAG 114 Query 148 GCTGATAACTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCTTACTTCTCAGGAAAAC 207 |||||| |||||||||||||||||||||||||||||||||| |||||||| | Sbjct 115 GCTGAT-TTTCCTGTTTTGTAGATTCCTCTGATATTCAGATTCCCACTTCTCA-G----- 167 Query 208 CCTAAAGAAAATTTCTGtttttttttGAGAAATATGAAGATACAATGTGATGTGTGTGAG 267 | ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 168 ------G-AAA--------TTTTTTTGAGAAATATGAAGATACAATGTGATGTGTGTGAG 212 Query 268 AAAGCTCCGGCCACGCTTATATGTTGTGCTGATGAAGCTGCTCTCTGCGCTAAATGTGAC 327 ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 213 AAAGCTCCGGCCACGCTTATATGTTGTGCCGATGAAGCTGCTCTGTGCGCTAAATGTGAT 272 Query 328 GTTGAGGTTCATGCTGCTAATAAACTCGCTAGCAAACACCAACGCCTTTTTCTTGACTCT 387 ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct 273 GTTGAGGTTCATGCTGCTAATAAGTTAGCTAGTAAACACCAACGCCTTTTTCTTGACTCT 332 Query 388 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 CTCTCAACTAAATTCCCTCCCTGCGACATCTGCCTTGAGAAGGCAGCTTTCATATTCTGT 392 Query 448 GTAGAGGATAGGGCTCTGCTCTGCAGAGATTGCGATGAGGCGACCCATGCGCCAAATACT 507 ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 393 GTAGAGGATAGGGCTCTGCTCTGCAGAGACTGCGACGAGGCGACCCATGCACCAAATACT 452 Query 508 CGCTCTGCTAATCACCAGAGGTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 567 |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 453 CGCTCTGCTAATCACCAGCGTTTCTTAGCCACTGGAATCCGAGTTGCTCTTAGTTCCACT 512 Query 568 AGTTGCAATCAAGAAGTGGAAAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 627 | ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 513 ATTTGCAGTCAAGAAGTGGAGAAGAATCACTTTGACCCATCTAATCAGCAGAGTCTCTCT 572 Query 628 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 573 AAACCGCCAACTCAGCAACCCGCTGCTCCATCTCCTTTGTGGGCTACCGATGAATTCTTC 632 Query 688 AGCTACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGGAGCTG 747 |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| Sbjct 633 CGCTACTCTGATCTTGAGTGCAGTAATAAGCAGAAAGAGCAACTCGACCTCGGGGAGCTG 692 Query 748 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGTA 807 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 693 GATTGGCTTGCAGAGATGGGTCTGTTTGGTGACCAGCCTGATCAAGAGGCTCTACCGGCA 752 Query 808 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGCTCATTCCTACAACAGACCT 867 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 753 GCCGAAGTTCCCGAGCTTTCCTTTTCACATTTGGCTCATGTTCATTCCTACAATAGACCT 812 Query 868 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTTGAGTACCGGTATGATGATGAAGAA 927 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 813 ATGAAGTCCAATGTACCCAACAAGAAGCAGAGACTTGAGTACCGGTATGATGATGATGAA 872 Query 928 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATGGATGAATCTAC-TAAGCT-TTA-T 984 ||||||||||||||||||||||||||||||||||| |||||| ||| || || ||| | Sbjct 873 GAGCACTTCCTAGTCCCCGACCTAGGCTAAACTATAGATGAA-CTAAATA-GCACTTAGT 930 Query 985 AAT-ATATAG-CACTTGATTCGC--ATAGTCTTCGGCTCTTCGCCTTGCTTTCTCCATGA 1040 |||| | | || | || ||| | || | | ||||||||||||||||||||| Sbjct 931 TCGCATAT-GTCTCTACACGGGCTCATA-TATT-GT-T-TTCGCCTTGCTTTCTCCATGA 985 Query 1041 TCTGATATGTGTATCACTGTAAGTAGCAGGCTAAAACTTGGAAAAACCTTATCATTTTAT 1100 |||| | |||||||||||||| || ||||||||||||||||||| |||||||||||||| Sbjct 986 TCTGGTTTGTGTATCACTGTA--TA-CAGGCTAAAACTTGGAAAA-CCTTATCATTTTAT 1041 Query 1101 TAGCAAGTGAAGCCTTAAATTGC 1123 |||||||||| ||||| |||||| Sbjct 1042 TAGCAAGTGATGCCTTGAATTGC 1064 > Ahg470616 jgi|Araly1|470616|fgenesh2_kg.1__570__AT1G06040.1 Length=1094 Score = 342 bits (185), Expect = 3e-93 Identities = 581/763 (76%), Gaps = 63/763 (8%) Strand=Plus/Plus Query 241 ATGAAGATACAATGTGATGTGTGTGAGAAAGCTCCGGCCACGCTTATATGTTGTGCTGAT 300 ||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| || Sbjct 165 ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATATGTTGTGCCGAC 224 Query 301 GAAGCTGCTCTCTG-CGCTAAATGTGACGTTGAGGTTCATGCTGCTAATAAACTCGCTAG 359 |||||||||||||| | || | || ||||| ||| ||||||| ||||| ||||||||||| Sbjct 225 GAAGCTGCTCTCTGTC-CTCACTGCGACGTCGAGATTCATGCCGCTAACAAACTCGCTAG 283 Query 360 CAAACACCAACGCCTTTTTCTTGACTCTCTCTCAACTAAATTCCCTCCCTGCGACATCTG 419 ||| |||||||| ||| |||| | |||||||| || ||||||||| ||||| ||||| Sbjct 284 CAAGCACCAACGTCTTCATCTTAATTCTCTCTCCACCGAATTCCCTCGTTGCGATATCTG 343 Query 420 CCTTGAGAAGGCAGCTTTCATATTCTGTGTAGAGGATAGGGCTCTGCTCTGCAGAGATTG 479 || ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || || Sbjct 344 CCAAGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTG 403 Query 480 CGATGAGGCGACCCATG-CGCCAAATACTCGCTCTGCTAATCACCAGAGGTTCTTAGCCA 538 |||||| | | ||| | | | ||| |||| |||||||||||||||||||||||||||| Sbjct 404 CGATGAATCCATCCACGTTG-CTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCA 462 Query 539 CTGGAATCCGAGTTGCTCTTAGTTCCACTAGTTGCAATCAAGAAGTGGAAAAGAATCA-C 597 |||| ||| ||| ||||| | || || || |||||| ||||| |||| ||||| || | Sbjct 463 CTGGGATCAAAGTAGCTCTGACCTCAACGAGCTGCAATAAAGAAATGGAGAAGAACCAAC 522 Query 598 -T-----TTG-A-C--CCATCTAAT-C--AG-CAGAGTCTCT-CTAAA-CCGCCAA-CT- 639 | || | | ||| | || | | |||| || | ||||| || |||| | Sbjct 523 CTGAGCCTTCCAACAACCAACAAAAACCTAATCAGATTC-CGGCTAAATCC-CCAAGCCA 580 Query 640 -CAGCAACC-CGCTGCTCCA--T-CTCCT-TT--GTGGGCTACCGATGAATTCTTC-AGC 690 ||||||| | || || || | |||| || ||||||| || || |||||| | | Sbjct 581 GCAGCAACAAC-CTTCTTCAGCTACTCCGCTTCCGTGGGCTGTTGACGATTTCTTCCA-C 638 Query 691 TACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGG-AGC---- 745 | ||| ||| | || | || | || || | || | ||| || |||||||||| || Sbjct 639 TTCTCCGATATCGAATCCACTGATCAG-A-AAGG-GCAGCTTGATCTCGGGGCAGGGGAG 695 Query 746 T-GGATTGGCTTGCAGAGATGGG-TCTGTTTGGTGACCAGCCTGATCA-AGAGGCTCTAC 802 | ||||||| || |||| ||||| | | || ||||| || | |||| | ||||||| | Sbjct 696 TTGGATTGGTTTTCAGACATGGGAT-TCTTCGGTGATCAAATTAATCACA-AGGCTCTTC 753 Query 803 CGGTAGCCGAAGTTCCCGAGCTTTCCT-TTTCACATTT-GGCTCATGCTCATTCCTACAA 860 | | ||| |||||||| |||||||| | |||| ||||| || ||||| |||||| ||||| Sbjct 754 CTGCAGCTGAAGTTCCTGAGCTTTC-TGTTTCGCATTTAGG-TCATGTTCATTCATACAA 811 Query 861 CAGACCTATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTT-GAGTACC-G-G-T-AT 915 | || |||||||| ||||| || ||||||||| |||| | ||| | | | | | || Sbjct 812 -AC-CC-ATGAAGTCGAATGTTTCCTACAAGAAGCCGAGG-TACGAG-ATCAGAGATGAT 866 Query 916 GATGATGAAGAAGAGCACTTCCTAGTCCCCGACCTAGGCTAAA 958 |||||||| || |||||||| | ||||| || || ||||||| Sbjct 867 GATGATGATGAGGAGCACTTTATTGTCCCTGATCTTGGCTAAA 909 > Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 Length=1239 Score = 69.4 bits (37), Expect = 5e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 1083 AAAACCTTATCATTTTATTAGCAAGTGAAGCCTTAAATTGCAA 1125 |||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1239 AAAACCTTATCATTTTATTAGCAAGTGATGCCTTGAATTGCAA 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41935208700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5