BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G31570.1 Length=853 Score E Sequences producing significant alignments: (Bits) Value Ahg952462 jgi|Araly1|952462|scaffold_76200001.1 867 0.0 Ahg933705 jgi|Araly1|933705|scaffold_401693.1 867 0.0 > Ahg952462 jgi|Araly1|952462|scaffold_76200001.1 Length=554 Score = 867 bits (469), Expect = 0.0 Identities = 523/549 (95%), Gaps = 4/549 (1%) Strand=Plus/Plus Query 83 AGAAAGAGACCA-ACGACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 141 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAGAGAGACCATA-GACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 59 Query 142 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGGACCAATACAAAGGCAAAACTCT 201 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 60 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGAACCAATACAAAGGCAAAACTCT 119 Query 202 TTTGGTTGTAAACGTTGCTTCCAAATGTGGTCTGACGGATGCGAACTACAAGGAACTGAA 261 | || |||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 120 TCTGATTGTCAATGTTGCTTCCAAATGTGGTCTGACTGATGCCAACTACAAGGAACTGAA 179 Query 262 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCGTGTAATCA 321 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 180 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCTTGTAACCA 239 Query 322 GTTCTTAGGACAAGAACCAGGAAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 381 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 GTTCTTAGGACAAGAACCAGGTAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 299 Query 382 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGTAAGAACACGGCACCATT 441 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 300 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGGAAAAACACGGCGCCATT 359 Query 442 ATACAAGTACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCTATCAAATGGAACTT 501 |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 360 ATACAAATACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCCATCAAATGGAATTT 419 Query 502 CACCAAATTCTTGGTTTCTCCTGATGGCAAGGTCTTACAGAGATATTCTCCCAGAACCTC 561 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 CACCAAATTCTTGGTTTCTCCTGATGGCAAAGTCTTACAGAGATATTCTCCCAGAACCTC 479 Query 562 TCCTCTTCAATTCGAGAAGGACATTCAAACTGC-GTTGGGACAGGCCTCTTCTTAATCAC 620 ||||||||||||||||||||||||||||| | | |||||||||||| ||||||| |||| Sbjct 480 TCCTCTTCAATTCGAGAAGGACATTCAAAAT-CTGTTGGGACAGGCTTCTTCTTGATCAT 538 Query 621 CAGAAGAAG 629 ||||||||| Sbjct 539 CAGAAGAAG 547 > Ahg933705 jgi|Araly1|933705|scaffold_401693.1 Length=554 Score = 867 bits (469), Expect = 0.0 Identities = 523/549 (95%), Gaps = 4/549 (1%) Strand=Plus/Plus Query 83 AGAAAGAGACCA-ACGACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 141 ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGAGAGAGACCATA-GACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 59 Query 142 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGGACCAATACAAAGGCAAAACTCT 201 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 60 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGAACCAATACAAAGGCAAAACTCT 119 Query 202 TTTGGTTGTAAACGTTGCTTCCAAATGTGGTCTGACGGATGCGAACTACAAGGAACTGAA 261 | || |||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 120 TCTGATTGTCAATGTTGCTTCCAAATGTGGTCTGACTGATGCCAACTACAAGGAACTGAA 179 Query 262 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCGTGTAATCA 321 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 180 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCTTGTAACCA 239 Query 322 GTTCTTAGGACAAGAACCAGGAAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 381 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 GTTCTTAGGACAAGAACCAGGTAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 299 Query 382 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGTAAGAACACGGCACCATT 441 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 300 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGGAAAAACACGGCGCCATT 359 Query 442 ATACAAGTACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCTATCAAATGGAACTT 501 |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 360 ATACAAATACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCCATCAAATGGAATTT 419 Query 502 CACCAAATTCTTGGTTTCTCCTGATGGCAAGGTCTTACAGAGATATTCTCCCAGAACCTC 561 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 CACCAAATTCTTGGTTTCTCCTGATGGCAAAGTCTTACAGAGATATTCTCCCAGAACCTC 479 Query 562 TCCTCTTCAATTCGAGAAGGACATTCAAACTGC-GTTGGGACAGGCCTCTTCTTAATCAC 620 |||||||||||||||||||||| |||||||| | |||||||||||| ||||||| |||| Sbjct 480 TCCTCTTCAATTCGAGAAGGACGTTCAAACT-CTGTTGGGACAGGCTTCTTCTTGATCAT 538 Query 621 CAGAAGAAG 629 ||||||||| Sbjct 539 CAGAAGAAG 547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31565775276 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5