BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31670.1
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482092 jgi|Araly1|482092|fgenesh2_kg.4__1152__AT2G31670.1 1227 0.0
> Ahg482092 jgi|Araly1|482092|fgenesh2_kg.4__1152__AT2G31670.1
Length=957
Score = 1227 bits (664), Expect = 0.0
Identities = 874/971 (90%), Gaps = 31/971 (3%)
Strand=Plus/Plus
Query 15 ATGATATGCGCAAGAATCCGACCGCTAATTTCGTCACCACTAGCTTTCACTATCTCAACA 74
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct 1 ATGATATGCGCAAGAATCCGACCGCTAATTTCGTCACCATTAGCCTTCACTATCTCCGCA 60
Query 75 ACCAAACACTC-CAGAATCAATCTCCGATTACTCCCTCGCCGCTCCTTCT---CCGT--- 127
|| |||||||| | |||||||||||||||| ||||||| |||||||||| ||||
Sbjct 61 ACTAAACACTCTC-CAATCAATCTCCGATTATTCCCTCGTCGCTCCTTCTCCGCCGTAAC 119
Query 128 ---CATGTCTTCTTCAACCCCACAGAGTCAGATCATAGAACACATCGTCTTATTCAAAAC 184
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
Sbjct 120 CGCCATGTCTTCTTCAACCCCACCGAGTCAGATCATAGAACACATCGTCTTTTTCAAAGC 179
Query 185 CAAAGACGACGCTGACTCCACCAAAATCACCTCCATGATCAACAACCTCAACGCTCTTGC 244
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CAAAGACGACGCTGACTCCAACAAAATCACTTCCATGATCAACAACCTCAACGCTCTTGC 239
Query 245 ATATCTCGATCAAGTGCTTCACATCTCCACCTCTCCTCTCCACCGT-AT--CTCCTCCGC 301
| |||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 240 CTCTCTCGATCAAGTGCTTCACATCTCCACCGCTCCTCTCCACCGTCTTGGATCCTCCGC 299
Query 302 TACCGCCTTCACTCACGTACTCCATAGCCGTTACGAATCTAAAGAAGATCTAGCCTCCTA 361
| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||
Sbjct 300 CGTCACCTTCACTCACGTCCTCCATAGCCGTTACGGATCTAAAGAAGATCTTGCCTCCTA 359
Query 362 CGCTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCGATCTGTGATGA 421
|| |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 360 CGGTGCACATCCAGATCACGTTCGTGTTGTTAAGGAATCTGTGTTACCGGTCTGCGACGA 419
Query 422 TATCATGGCTGTTGATTGGATCGCTGATCGAATCCCCGGAACCGTAGCGCCGCTTCCTGG 481
||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||
Sbjct 420 CATCATGGCTGTTGATTGGATCGCCGATCGAGTCCCCGGAACCCTAGCGCCGCCTCCTGG 479
Query 482 TTCGGTTGCTAAACTCACATTGCTCAAATTGAAAGAGGATGTAGCAGATGAGGCGAAATC 541
||||||||| |||||||| | || |||||||||||| || | | ||||||||||||||
Sbjct 480 TTCGGTTGCGAAACTCACGCTACTTAAATTGAAAGAGAATCTCTCCGATGAGGCGAAATC 539
Query 542 GGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGGATTGATCAGATTAC 601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GGAGATTACGGGAGTGATTAAGGGACTAAGTGAGAAATTTCCAGGAATTGATCAGATTAC 599
Query 602 TGTTGGAGAAAACTTTTCTCCTGCTAGAGCTAAAGGTTTCTCTATTGCTTCGATTGCGTA 661
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 600 TGTTGGAGAAAACTTTTCTCCAGCTAGAGCTAAAGGTTTCACTATTGCTTCGATTGCGTA 659
Query 662 TTTCAAGGATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAAGAGTTGGTGAATTCGCA 721
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 CTTCAAGAATTTGAGTGAAATGGAAGCTGTGGATGCTCAGAAGGAGTTGGTGAATTCGCA 719
Query 722 AAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCGTTGTGCCGTC 781
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AAAGGATAAGGTTCGTGATTATGTGGATTCTACCATTGTTGTTGAGTTCGTGGTGCCGTC 779
Query 782 TTCTTCACAGTCTTCTAGTCTGTAGAAA--GTTTCAATTTCAATCCCTTGAA-AGCTTTG 838
|| ||||||||||||||||||||| ||| | |||||||||||||| ||||| | |||||
Sbjct 780 TTTTTCACAGTCTTCTAGTCTGTAAAAAAAGGTTCAATTTCAATCCTTTGAACA-CTTTG 838
Query 839 GGACCTGTTTGTTATTTGAGAATAAAGAAACTTGAGTGTGATGAT-ATATGCTTCTGTTT 897
|||||| ||||| | ||||||||||||||| |||||||||||||| |||| | || |||
Sbjct 839 GGACCTATTTGTCACTTGAGAATAAAGAAATTTGAGTGTGATGATGATATA-TGCT-TTT 896
Query 898 CATTATCTTCTTATCTCTCGGTGAGGAACTCTGTTGGAATAAGAATTTTTAAGCACTAAG 957
|| | ||| || | ||||||||||||||||||||||| |||||||||| |||
Sbjct 897 G-TT-T-TTCC---CT-T---TGAGGAACTCTGTTGGAATAAGATTTTTTAAGCAGAAAG 946
Query 958 AAACTTTGAGC 968
|||||||||||
Sbjct 947 AAACTTTGAGC 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35949910731
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5