BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G31680.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933714 jgi|Araly1|933714|scaffold_401702.1 1072 0.0
Ahg919287 jgi|Araly1|919287|scaffold_100568.1 608 2e-173
> Ahg933714 jgi|Araly1|933714|scaffold_401702.1
Length=705
Score = 1072 bits (580), Expect = 0.0
Identities = 647/680 (95%), Gaps = 2/680 (0%)
Strand=Plus/Plus
Query 80 agaaa-ca-aaaaaaaCGATGTCGTCCGATGACGAAGGAGGAGAAGAGTATCTATTCAAG 137
||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 8 AGAAATCAGAAAAAAACGATGTCGTCCGATGACGAAGGAGGAGAGGAGTATCTCTTCAAG 67
Query 138 ATAGTGATAATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTATGCTCGT 197
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 68 ATAGTGATCATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTACGCTCGT 127
Query 198 AACGAGTTCAACGCTCATTCCAAGGCCACGATCGGCGTCGAGTTCCAGACGCAGAATATG 257
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct 128 AACGAGTTCAACGCTCATTCCAAAGCCACGATCGGCGTCGAGTTCCAAACGCAAAACATG 187
Query 258 GAAATCGAAGGTAAAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGGTTT 317
|| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 188 GAGATCGAAGGAAAAGAGGTTAAAGCTCAGATTTGGGATACTGCTGGTCAGGAACGGTTC 247
Query 318 CGTGCCGTCACTTCCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATT 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CGTGCCGTCACTTCCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATT 307
Query 378 AGTCGTCGATCCACGTTTGAGAGTGTTGGTCGTTGGCTTGATGAGCTCAAGACACATTCG 437
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 308 AGCCGTCGATCCACGTTTGAGAGCGTTGGTCGTTGGCTTGATGAGCTTAAGACACATTCG 367
Query 438 GATACAACGGTTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCG 497
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GATACAACAGTTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCG 427
Query 498 GTGAGCGTGGAAGAAGGCAAAGCACTAGCTGAAACCGAAGGACTATTTTTCATGGAAACA 557
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 428 GTGAGCGTGGAGGAAGGCAAAGCACTAGCGGAAACCGAAGGACTATTCTTCATGGAAACA 487
Query 558 TCAGCTCTCGATTCAACAAATGTTAAAACAGCTTTCGAAATGGTAATCCGTGACATCTAT 617
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 TCAGCTCTCGATTCAACAAATGTTAAAACAGCTTTTGAAATGGTAATCCGTGACATCTAC 547
Query 618 ACCAATATAAGCCGGAAACAACTCAACTCCGACACTTATAAAACCGAACTAAGCATGAAA 677
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 548 ACCAATGTTAGCCGGAAACAACTCAATTCCGACACTTATAAAACCGAACTAAGCATGAAG 607
Query 678 AACAGAGTCAGTCTCGTTAAGGACGATAATAAAAGCTCCACACAAGGCTTTGGTTTCTCT 737
||| |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 608 AACCGAGTAAGTCTCGTTAAGGACGATAACAAAGGGTCCACACAAGGCTTTGGTTTCTCT 667
Query 738 TGCTGTTCTTCCTCGTGACC 757
||||||||||||||||||||
Sbjct 668 TGCTGTTCTTCCTCGTGACC 687
> Ahg919287 jgi|Araly1|919287|scaffold_100568.1
Length=697
Score = 608 bits (329), Expect = 2e-173
Identities = 561/672 (83%), Gaps = 19/672 (3%)
Strand=Plus/Plus
Query 92 aaCGATGTCGTCCGATGACGAAGGAGGAGAAGAGTATCTATTCAAGATAG-TGATAATCG 150
||||||||| || || ||||||||| |||| |||||||| |||||||||| || | ||||
Sbjct 17 AACGATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTTCAAGATAGTTG-TCATCG 75
Query 151 GCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTCGCTATGCTCGTAACGAGTTCAACG 210
|||||||||| ||||| ||||| || ||||| ||||| || |||||||||||||||| |
Sbjct 76 GCGACTCTGCGGTCGGTAAATCTAATCTTCTGTCTCGTTACGCTCGTAACGAGTTCAGTG 135
Query 211 CTCATTCCAAGGCCACGATCGGCGTCGAGTTCCAGACGCAGAATATGGAAATCGAAGGTA 270
| |||||||||| |||||||| |||||||| |||||||||| |||||| || |||||||
Sbjct 136 CGAATTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAGTATGGAGATTGAAGGTA 195
Query 271 AAGAAGTTAAAGCTCAGATTTGGGATACTGCTGGTCAAGAACGGTTTCGTGCCGTCACTT 330
|||| ||||| |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 196 AAGAGGTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGGTTTCGTGCCGTCACTT 255
Query 331 CCGCTTATTATCGCGGCGCCGTCGGAGCTCTCGTCGTTTACGATATTAGTCGTCG-ATCC 389
|||||||||| || ||||| ||||| || |||||||||||||| |||| || || | ||
Sbjct 256 CCGCTTATTACCGTGGCGCTGTCGGTGCGCTCGTCGTTTACGACATTACCCGCCGCA-CC 314
Query 390 ACGTTT-GAGAGTGTTGGTCGTTGGCTTGATGAGCTCAAGA-CACATTCGGATACAACGG 447
|| ||| || || ||||| |||||||| |||||||| |||| | ||||||||||||||||
Sbjct 315 AC-TTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATC-CATTCGGATACAACGG 372
Query 448 TTGCGAGGATGCTGGTGGGAAACAAATGCGATCTAGAAAGCATAAGAGCGGTGAGCGTGG 507
| ||||| ||||||||||| ||||| || |||||||||| ||||||||| ||||||||||
Sbjct 373 TGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAAGAGCAGTGAGCGTGG 432
Query 508 AAGAAGGCAAAG-CACTAGCTGAAACCGAAGGACTATT-TTTCATGGAAACATCAGCTCT 565
| ||||| |||| | ||||| ||| | || || || || ||| |||||||||| |||||
Sbjct 433 ACGAAGG-AAAGGCCCTAGCAGAAGCGGAGGGGCTCTTCTTTG-TGGAAACATCGGCTCT 490
Query 566 CGATTCAACAAATGTTAAAACAGCTTTCGAAATGGTAATCCGTGACATCTATACCAATAT 625
||||| || |||||||||||||||||||||||||| || | ||||||||| | || |
Sbjct 491 TGATTCCACCAATGTTAAAACAGCTTTCGAAATGGTGATACTTGACATCTACAATAACGT 550
Query 626 AAGCCGGAAACAACTCAACTCCGACACTTATAAA-ACCGAACTAAGCATGAAAAACAGAG 684
||||| || ||||||||||| |||||||||||| | ||||| | | |||| | | |
Sbjct 551 GAGCCGTAAGCAACTCAACTCAGACACTTATAAAGAT-GAACTCACCGTGAAC--CGG-G 606
Query 685 TCAGTCTCGTTAAGGACGATAATAAAAGC-TCCACACAAGGCTTTGGTTTCTCTTGCTGT 743
| ||||| |||||||| ||||| | || |||| |||| ||| |||||||||||| |||
Sbjct 607 TAAGTCTTGTTAAGGATGATAACACT-GCCTCCAAACAAAGCTCTGGTTTCTCTTGTTGT 665
Query 744 TCTTCCTCGTGA 755
|||||||| |||
Sbjct 666 TCTTCCTCTTGA 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5