BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32080.1 Length=1500 Score E Sequences producing significant alignments: (Bits) Value Ahg901018 jgi|Araly1|901018|Al_scaffold_0004_1668 1367 0.0 Ahg333180 jgi|Araly1|333180|fgenesh1_pm.C_scaffold_103000004 1367 0.0 > Ahg901018 jgi|Araly1|901018|Al_scaffold_0004_1668 Length=864 Score = 1367 bits (740), Expect = 0.0 Identities = 827/865 (96%), Gaps = 21/865 (2%) Strand=Plus/Plus Query 155 ggaggagctgaaggcggaagagcggtaaccggaggaggaggaggaggaggagggagCGAT 214 ||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 19 GGAGGAGCTGAAGGCGGAAGAGCGGCAACC---------GGAGGAGGAGGAGGGAGCGAT 69 Query 215 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTATTCTATTTTGATCTTAAG 274 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 70 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTTTTCTATTTTGATCTTAAG 129 Query 275 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 189 Query 335 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAACTACTATGTCAAT 394 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 190 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAATTACTATGTCAAT 249 Query 395 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 309 Query 455 GATATCGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 514 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GACATTGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 369 Query 515 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 429 Query 575 AGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGGTG 634 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 430 AGGAATATATTGGCTGAGATTCATGAAGCATCAGGACTTTTTGTGATGCCAAATAAGGTG 489 Query 635 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGAGCTGGTTTTATACCTGGA 694 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 490 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGGGCTGGATTTATACCTGGC 549 Query 695 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGAACAATTGACTCGCCA 754 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 550 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGATCAGTTGACTCGCCA 609 Query 755 GGCCAGGAAGAAACCGGAATGACTGGTGTTTCTAAAGTAATCAGAGCTGACCAGAAACGG 814 |||||||||||||| || | | | ||||||||||||||||||||||||||||| Sbjct 610 GGCCAGGAAGAAAC-----TG--T--T-T--CTAAAGTAATCAGAGCTGACCAGAAACGG 657 Query 815 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCTTAAGGATATCTGAGGTGGCA 874 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 658 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCCTGAGGATATCTGAGGTAGCA 717 Query 875 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 777 Query 935 ATTGGTCACTTTGTGGAGATCACCAAAGATAAAATTGAAGGTATGACAGGTGCAAATGTC 994 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 778 ATTGGTCACTTTGTGGAGATCACCAAAGATAAGATTGAAGGTATGACGGGTGCAAATGTC 837 Query 995 AGGACAGTTGATCCTCCTCAGAGAT 1019 ||||||||||||||||||||||||| Sbjct 838 AGGACAGTTGATCCTCCTCAGAGAT 862 > Ahg333180 jgi|Araly1|333180|fgenesh1_pm.C_scaffold_103000004 Length=864 Score = 1367 bits (740), Expect = 0.0 Identities = 827/865 (96%), Gaps = 21/865 (2%) Strand=Plus/Plus Query 155 ggaggagctgaaggcggaagagcggtaaccggaggaggaggaggaggaggagggagCGAT 214 ||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 19 GGAGGAGCTGAAGGCGGAAGAGCGGCAACC---------GGAGGAGGAGGAGGGAGCGAT 69 Query 215 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTATTCTATTTTGATCTTAAG 274 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 70 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTTTTCTATTTTGATCTTAAG 129 Query 275 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 189 Query 335 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAACTACTATGTCAAT 394 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 190 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAATTACTATGTCAAT 249 Query 395 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 309 Query 455 GATATCGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 514 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 GACATTGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 369 Query 515 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 429 Query 575 AGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGGTG 634 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 430 AGGAATATATTGGCTGAGATTCATGAAGCATCAGGACTTTTTGTGATGCCAAATAAGGTG 489 Query 635 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGAGCTGGTTTTATACCTGGA 694 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 490 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGGGCTGGATTTATACCTGGC 549 Query 695 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGAACAATTGACTCGCCA 754 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 550 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGATCAGTTGACTCGCCA 609 Query 755 GGCCAGGAAGAAACCGGAATGACTGGTGTTTCTAAAGTAATCAGAGCTGACCAGAAACGG 814 |||||||||||||| || | | | ||||||||||||||||||||||||||||| Sbjct 610 GGCCAGGAAGAAAC-----TG--T--T-T--CTAAAGTAATCAGAGCTGACCAGAAACGG 657 Query 815 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCTTAAGGATATCTGAGGTGGCA 874 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| Sbjct 658 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCCTGAGGATATCTGAGGTAGCA 717 Query 875 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 934 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 777 Query 935 ATTGGTCACTTTGTGGAGATCACCAAAGATAAAATTGAAGGTATGACAGGTGCAAATGTC 994 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 778 ATTGGTCACTTTGTGGAGATCACCAAAGATAAGATTGAAGGTATGACGGGTGCAAATGTC 837 Query 995 AGGACAGTTGATCCTCCTCAGAGAT 1019 ||||||||||||||||||||||||| Sbjct 838 AGGACAGTTGATCCTCCTCAGAGAT 862 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56145021130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5