BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32100.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482142 jgi|Araly1|482142|fgenesh2_kg.4__1202__AT2G32100.1 1232 0.0
Ahg497258 jgi|Araly1|497258|fgenesh2_kg.103__3__AT2G32100.1 736 0.0
> Ahg482142 jgi|Araly1|482142|fgenesh2_kg.4__1202__AT2G32100.1
Length=928
Score = 1232 bits (667), Expect = 0.0
Identities = 856/944 (91%), Gaps = 26/944 (3%)
Strand=Plus/Plus
Query 1 ATGCCAAAAATCTTGTGGAAAAGCCTCCATCTTTGCTTCCCGTCAAATCTCACCAAATGC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCCAAAAATCTTGTGGAAAAGCCTCCATCTTTGCTTCCCGTCGAATCTCACCAAATGC 60
Query 61 TATTCTTCGCCGTGTATTCCTCCGTCCTCCGCCGATCCCGACGGTATC-ATCCAACCTAA 119
|||||||||||||||||||| |||||||||||||||| ||| || | | ||||||||
Sbjct 61 TATTCTTCGCCGTGTATTCCCCCGTCCTCCGCCGATCAAGACTTTACCGA-CCAACCTAG 119
Query 120 CCGTCCCTCCATCGTTCTTCTCAATAACTTCAACCTCCTTTACCACAATGACAACCACCA 179
||||||||| |||||||| |||||||||||||||||||| |||||| ||||||| || |
Sbjct 120 CCGTCCCTCTATCGTTCTCCTCAATAACTTCAACCTCCTCTACCACCATGACAA-CA--A 176
Query 180 CCACCCCCATCGTGTCATTGACTTACCTTCTTCCTCCACCACAACCACTCCGGCCGCCAC 239
||| | ||| ||||||| |||||||||||| ||||| |||| ||||||||||| |||||
Sbjct 177 CCAACACCACCGTGTCACTGACTTACCTTCCTCCTCTGCCACCACCACTCCGGCAGCCAC 236
Query 240 CTCCTCCTCATCCACGTCATCATATGAATCTGATATCTCTCCTGATGTATCCGCCGCTTT 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 CTCCTCGTCATCCACGTCATCATATGAATCTGATATCTCTCCTGATGTATCCGCGGCTTT 296
Query 300 TGCTTCCCGTCGCTTCTTCTTCTCTTCCCCTGGTCGGTCCAATGCAATCACCGACTCACC 359
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 297 CGCTTCTCGTCGCTTCTTCTTCTCTTCCCCTGGCCGGTCCAATGCAATCACCGACTCACC 356
Query 360 AGAACCCCGGTCAAGAGAATTCTCTGATAATTACGATGATGCCACTATCACGTCGACAAA 419
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 AGAAACCCGGTCAAGAGAATTCTCTGATAACTACGATGATGCCACTATCACGTCGACAAA 416
Query 420 GAAGAAGAAAAAGAAGGTTTATGATAATTCCGTGACTACTACTACTACGAGGCTTATAAG 479
||| ||||| ||||| |||||||| | ||||| |||||||||||||||||||||||
Sbjct 417 GAAAAAGAAGAAGAA---TTATGATACTACCGTG---ACTACTACTACGAGGCTTATAAG 470
Query 480 CGGAGGAACCGCCGTAACTCAACACGTGGACTCACCGGATCCGTTAACTGACTTCCGGCG 539
||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 471 CGGAGGAACCGCCGTGACTCAAAACGTGGACTCACCGGATCCGTTAACGGACTTCCGGCG 530
Query 540 ATCCATGCAAGAGATGATTGACGCCGCCATCGACGCCGGAGAACTTAGTCGTGATCCGAA 599
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 531 ATCAATGCAAGAGATGATTGACGCCGCCATTGACGCCGGAGAACTTAGCCGTGATCCGAA 590
Query 600 CGACGGTTACGATTTCTTGGATGAACTGCTACTCACTTATCTCTCTTTAAATCCAGCCGA 659
||| |||||||||||||||||||| || ||||||||||||||||| || |||||| ||||
Sbjct 591 CGATGGTTACGATTTCTTGGATGAGCTCCTACTCACTTATCTCTCCTTGAATCCAACCGA 650
Query 660 CACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCGGAAGA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 651 CACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCTGAAGA 710
Query 720 ACGCCGGATATGCTGACGTGGTGATGGCCGCCGGGATaaaaaaaaaaCTCCCGTGCAATG 779
|||||| |||||||||||||| | |||||||||||||||| | |||||| | ||
Sbjct 711 ACGCCGAATATGCTGACGTGGCGGCAGCCGCCGGGATAAAAA-----CGCCCGTGTATTG 765
Query 780 AATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCT-TTTTTCCA----A-T--G 831
||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
Sbjct 766 AATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCTCTTTTTCCATTGTAATTTG 825
Query 832 TACGTCTTCATGGAAGAGTAACTAAGCAAACCAGAAAAAATTATTACTGACAATTTCATA 891
|||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||| |||
Sbjct 826 TACGTCTTCATGGAAGAGTAGCTAAGCAACCCA-AAAAAATTAATACTGACAATTTTATA 884
Query 892 TTTTGTATGTTTTATTAA-AATAATTGAATGATGCAAAGGATAG 934
||||||||||||| || ||| ||||||||||| |||||||||
Sbjct 885 TTTTGTATGTTTTTTTTTTAATTATTGAATGATGAAAAGGATAG 928
> Ahg497258 jgi|Araly1|497258|fgenesh2_kg.103__3__AT2G32100.1
Length=760
Score = 736 bits (398), Expect = 0.0
Identities = 528/588 (90%), Gaps = 20/588 (3%)
Strand=Plus/Plus
Query 356 CACCAGAACCCCGGTCAAGAGAATTCTCTGATAATTACGATGATGCCACTATCACGTCGA 415
||||| || | ||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 184 CACCA-AA-CTCGGTCAAGAGAATTCTCGGATAATTACGACGATGCCACTGTCACGTCGA 241
Query 416 CAAAGAAGAAGAAAAAGAAGGTTTATGATAATTCCGTGACTACTACTACTACGAGGCTTA 475
||||||||||||| |||||| | |||||| | ||||| |||||||||||||||||||
Sbjct 242 CAAAGAAGAAGAAGAAGAAGAATGATGATACTGCCGTG---ACTACTACTACGAGGCTTA 298
Query 476 TAAGCGGAGGAACCGCCGTAACTCAACACGTGGACTCACCGGATCCGTTAACTGACTTCC 535
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 299 TAAGCGGAGGAACCGCCGTGACGCAAAACGTGGACTCACCGGATCCGTTAACTGACTTCC 358
Query 536 GGCGATCCATGCAAGAGATGATTGACGCCGCCATCGACGCCGGAGAACTTAGTCGTGATC 595
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 359 GGCGATCAATGCAAGAGATGATTGACGCCGCCATTGACGCCGGAGAACTTAGCCGTGATC 418
Query 596 CGAACGACGGTTACGATTTCTTGGATGAACTGCTACTCACTTATCTCTCTTTAAATCCAG 655
||||||| |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 419 CGAACGATGGTTACGATTTCTTGGATGAGCTCCTACTCACTTATCTCTCCTTGAATCCAA 478
Query 656 CCGACACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCGG 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CCGACACACACAAGTTCGTCATCAGGGCTTTCTCCGACATATTGGTCTCACTCTTGTCTG 538
Query 716 AAGAACGCCGGATATGCTGACGTGGTGATGGCCGCCGGGATaaaaaaaaaaCTCCCGTGC 775
|||||||||| |||||||||||||| | |||||||||||||||| | ||||||
Sbjct 539 AAGAACGCCGAATATGCTGACGTGGCGGCAGCCGCCGGGATAAAAA-----CGCCCGTGT 593
Query 776 AATGAATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCT-TTTTTCCA----A- 829
| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 594 ATTGAATGCAACACGTGACTATTAGTTCAGTGAACCTAACTTTCTCTTTTTCCATTGTAA 653
Query 830 T--GTACGTCTTCATGGAAGAGTAACTAAGCAAACCAGAAAAAATTATTACTGACAATTT 887
| ||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||||||
Sbjct 654 TTTGTACGTCTTCATGGAAGAGTAGCTAAGCAACCCA-AAAAAATTAATACTGACAATTT 712
Query 888 CATATTTTGTATGTTTTATTAA-AATAATTGAATGATGCAAAGGATAG 934
|||||||||||||||| || ||| ||||||||||| |||||||||
Sbjct 713 TATATTTTGTATGTTTTTTTTTTAATTATTGAATGATGAAAAGGATAG 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5