BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32150.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901023 jgi|Araly1|901023|Al_scaffold_0004_1673 1227 0.0
> Ahg901023 jgi|Araly1|901023|Al_scaffold_0004_1673
Length=795
Score = 1227 bits (664), Expect = 0.0
Identities = 754/797 (95%), Gaps = 7/797 (1%)
Strand=Plus/Plus
Query 90 ATGGA-TT-T-CTCTCCGATCAACTGCCTCATTTTCGATTTGGATGACACATTATACCCT 146
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTCTCCTCTCCGATCAACTGCCTCATTTTCGATTTGGATGACACATTATACCCT 60
Query 147 CTAAAAACTGGAATAGCGCCAGCTGTCAAGAAGAATATTGACGATTTTCTAGTGGAGAAA 206
|| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 61 CTGAAAACCGGAATAGCGCCAGCTGTCAAGAAGAATATCGACGATTTTCTGGTGGAGAAA 120
Query 207 TTTGGATTCTCAGAAAGTAAAGCTTCAAGCTTAAGAGTTGAACTCTTCAAGACTTATGGA 266
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTGGATTCTCAGAAAGTAAAGCTTCAAGTTTAAGAGTTGAACTCTTCAAGACTTATGGA 180
Query 267 AGTACTCTCGCTGGTCTTAGGGCGTTAGGTCATGATGTTCATCCTGATGAATATCACAGT 326
|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTACTCTTGTTGGTCTCAGGGCGTTAGGTCATGATGTTCATCCTGATGAATATCACAGT 240
Query 327 TTCGTGCACGGAAGGTTACCGTATGGGTCGATCGAACCAAACAACAAGCTACGTAACCTT 386
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TTCGTGCACGGAAGATTACCGTATGGCTCGATCGAACCAAACAACAAGCTACGTAACCTT 300
Query 387 CTCAACAAAATCAAACAGAGAAAAATTATATTTACGAATTCGGACAAGAATCATGCGGTG 446
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTCAACAATATCAAACAGAGAAAAATTATATTTACGAATTCGGACAGGAATCATGCGGTG 360
Query 447 AAGGTCCTCAAGAAACTT-GGTTTAGAAGATTGTTTCGAAGAGATGATTTGTTTTGAGAC 505
|| || || ||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGTTCTTGAGAAA-TTGGGTTTACAAGATTGTTTCGAAGAGATGATTTGTTTTGAGAC 419
Query 506 AATGAACCCAAATTTATTCGGGTCAACAACCCGACCCGATGAATACCCGGTTGTTCTCAA 565
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 420 AATGAACCCGAATTTATTCGAGTCAACAACCCGACCCGATGAACACCCGGTTGTTCTCAA 479
Query 566 GCCTTCGTTGACCGCAATGGATATTTGCATTCGTGTAGCCAACGTTGATCCTCGCCGAAC 625
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCCGTCGTTGACTGCAATGGATATTTGCATTCGTGTAGCCAACGTTGATCCTCGCCGAAC 539
Query 626 AGTATTTTTGGATGATAATATCCACAATATTACCGCGGGTAAATCTGTCGGGCTTCGCAC 685
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 AGTATTTTTGGATGATAATATCCACAATATTACCGCGGGTAAGTCTGTCGGGCTTCGCAC 599
Query 686 AATCCTGGTGGGAAGAGCAGAAAAGACGAAAGATGCGGATTATGCGGTGGAGACGGTTAC 745
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 AATACTGGTGGGAAGAGCAGAAAAGACGAAAGATGCGGATTATGCGGTGGAGACGGTGAC 659
Query 746 TGAGATAGCTACGGCGGTGCCAGAGATTTGGGCTACGGCGACGGCGACAGGCGGATTTGA 805
|||||||||||||||||| || ||||||||| ||||| ||||| || ||||| |||||
Sbjct 660 TGAGATAGCTACGGCGGTACCGGAGATTTGGAAGACGGCAACGGCTACGGGCGGGTTTGA 719
Query 806 CGTTGGTGGTGAGAGGATCAGACGGAGCAAGAGTGAGCTGGAGGGTATGGCTTCAAT-AG 864
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 CGTCGGCGGTGAGAGGATCAGACGGAGCAAGAGTGAGCTGGAGGGTATGGCTTCAATCA- 778
Query 865 CAGCCGTCGGTGCGTGA 881
|||||||||||||||||
Sbjct 779 CAGCCGTCGGTGCGTGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5