BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32480.1 Length=1557 Score E Sequences producing significant alignments: (Bits) Value Ahg482175 jgi|Araly1|482175|fgenesh2_kg.4__1235__AT2G32480.1 2431 0.0 > Ahg482175 jgi|Araly1|482175|fgenesh2_kg.4__1235__AT2G32480.1 Length=1541 Score = 2431 bits (1316), Expect = 0.0 Identities = 1480/1557 (95%), Gaps = 20/1557 (1%) Strand=Plus/Plus Query 1 AATCGTACCACTTCACCGTAGTACTCCAAAATCTCCACTTCTCACGAAACAATGCTATTA 60 ||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| Sbjct 1 AATCGTACCACTTCACCGTAGTACTCCAAAACCTCCGCTTC-CACGAAACAATGCTATTA 59 Query 61 AACATTTCTTCTTCTCCAATCTCTCATCGAAACCCTCACTTCCTCTCCAATTTCAACAAC 120 |||||||||||||||||||||||||||||||||||||| || | | ||||||||| Sbjct 60 AACATTTCTTCTTCTCCAATCTCTCATCGAAACCCTCA----CT-T-C---TTCAACAAC 110 Query 121 CCCATCTCTTATTTCCCTCGACGATCCAAAACCCATCTCTCAAAATCTCATTTTTTCCCC 180 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 111 CCCATCTCTTATTTCCCTCGGCGATCCAAAACCCATCTCTCAAAATCTCATCTTTTCCCC 170 Query 181 AAGTTCACTCCTTTATCCAACCAAAGTCTCAAAAACAGAGTCTTGTTCGGAAACAAGAGG 240 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 171 AAGTTCACTCCTTTATCGAACCAGAGTCTCAAAAACAGAGTCTTGTTCGGAAACAAGAGG 230 Query 241 TACCCAGATGGAGAAAGGTTTGATTTTAGATCAAGAGCTATCTCCGGGATTGATTTGGGA 300 | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 231 TGCCCAGATGGAGAAAGGTTTGATTTTAGGGCAAGAGCAATCTCCGGGATTGATTTGGGA 290 Query 301 AGCTTTGAATCTGTTCTTGAAGCTATTGCTGTTCTCACAACGATCATCGTCGTCCATGAA 360 |||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||| Sbjct 291 AGCTTTGAATCTGTTCTTGAAGCTATTGCTGTTCTCACTACGATCATCGTTGTTCACGAA 350 Query 361 TCAGGTCATTTCCTTGCGGCTTCTCTCCAAGGGATCCATGTGAGTAAATTCGCAATTGGG 420 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 351 TCAGGTCATTTCCTAGCGGCTTCTCTTCAAGGGATCCATGTGAGTAAATTCGCAATTGGG 410 Query 421 TTTGGTCCGATTCTAGCTAAGTTCGATTACAACAATGTTGAGTATTCGCTTAGGGCTTTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 TTTGGTCCGATTCTAGCTAAGTTCGATTACAACAATGTTGAGTATTCGCTTAGGGCTTTT 470 Query 481 CCTTTAGGTGGGTTTGTTGGTTTCCCTGATAATGATCCAGATAGTGAGATTCCTATTGAC 540 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 471 CCTTTAGGTGGGTTTGTTGGTTTCCCTGATAATGATCCTGACAGTGAGATTCCTATTGAT 530 Query 541 GATGAGAATCTTCTTAAGAACAGACCAACTCTAGATAGATCAATTGTTGTTTCAGCTGGA 600 ||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||| Sbjct 531 GATGAGAATCTGCTTAAGAACAGACCAACTTTAGACAGATCGATTGTTGTTTCAGCTGGA 590 Query 601 ATTATCGCCAATGTGATCTTTGCTTATGCTATAATCTTTGTTCAAGTGTTATCTGTTGGT 660 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 591 ATTATCGCCAATGTGATCTTTGCTTACGCTATAATCTTTGTTCAAGTGCTATCTGTTGGT 650 Query 661 TTACCTGTACAAGAAGCGTTTCCTGGTGTTCTTGTTCCTGAAGTTAAGACCTTTTCTGCT 720 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 651 TTGCCTGTACAAGAAGCGTTTCCTGGTGTTCTTGTTCCTGAAGTTAAGACCTTTTCTGCT 710 Query 721 GCTTCTCGTGATGGGTTGCTTTCTGGTGATGTAATTC-TCGCTGTGGACGGTACTGAGCT 779 |||||||||||||| |||||||| |||||||||| || |||||||||||||| || |||| Sbjct 711 GCTTCTCGTGATGGATTGCTTTCGGGTGATGTAA-TCATCGCTGTGGACGGTGCTCAGCT 769 Query 780 GTCTAAAACCGGGCCTGACGCTGTTTCGAAGATTGTTGACATTGTTAAAAGAAACCCGAA 839 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 770 GTCTAAAACCGGGCCTGACGCTGTTTCCAAGATTGTTGACATTGTCAAAAGAAACCCGAA 829 Query 840 GAGTAATGTGGTGTTT-AGAATCGAAAGAGGGGGTGAAGATTTCGATATTCGGGTTACAC 898 |||| ||||| ||||| || |||| |||||| | ||||||||||||||||||| |||| Sbjct 830 GAGTGATGTGTTGTTTAAG-GTCGAGAGAGGGAATAAAGATTTCGATATTCGGGTAACAC 888 Query 899 CGGATAAGAACTTTGATGGGACGGGGAAGATCGGTGTTCAGTTGTCTCCAAATGTTAGAA 958 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 889 CGGATAAGAACTTTGATGGGACGGGGAAGATTGGTGTTCAGTTGTCTCCAAATGTTAGAA 948 Query 959 TCACTAAGGTGAGACCGAGGAACATTCCGGAAACGTTTAGATTTGTGGGAAGGGAGTTTA 1018 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 949 TCACTAAGGTGAGACCGAGGAACATTCCGGAAACGTTTAGATTCGTGGGAAGGGAGTTTA 1008 Query 1019 TGGGGCTATCTTCTAATGTTTTGGACGGTTTAAAACAAACATTCTTTAACTTCTCTCAGA 1078 |||||||||| |||||||||||||| ||| |||||||||| ||||| ||||| ||||| | Sbjct 1009 TGGGGCTATCGTCTAATGTTTTGGATGGTCTAAAACAAACGTTCTTCAACTTTTCTCAAA 1068 Query 1079 CAGCAAGTAAAGTAGCAGGTCCTGTGGCAATTATTGCAGTGGGAGCAGAAGTGGCAAGAT 1138 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1069 CTGCAAGTAAAGTAGCAGGTCCTGTGGCAATTATTGCAGTGGGAGCAGAAGTGGCAAGAT 1128 Query 1139 CAAATATCGACGGGCTTTACCAATTCGCAGCGTTGCTGAATATCAACCTTGCGGTGATCA 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 CAAATATCGACGGGCTTTACCAATTCGCAGCGTTGCTGAATATCAACCTTGCGGTGATCA 1188 Query 1199 ATCTCTTGCCGTTACCGGCTCTTGACGGTGGAACATTGGCATTGATATTGTTGGAAGCTG 1258 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1189 ATCTCTTGCCATTACCGGCTCTTGACGGTGGAACTTTGGCATTGATATTGTTGGAAGCTG 1248 Query 1259 TTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGGATAATGTCTTCAGGGATCA 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1249 TTAGAGGAGGGAAGAAGCTTCCTGTAGAGGTAGAACAAGGGATAATGTCTTCAGGGATCA 1308 Query 1319 TGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGACACACTTAGCCTTGATTTCA 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1309 TGCTTGTGATATTCCTTGGATTGTTTCTCATCGTTAAGGACACACTTAGCCTTGATTTTA 1368 Query 1379 TCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAGAAACTTTAGTGTGAAGAGG 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1369 TCAAAGAAATGTTGTAGTTATCTCTTTGAGGAGGAAGAGAGAAACTTTAGTGTGAAGAGG 1428 Query 1439 TTGAGAGTTTAGAACAAATTTGGCTATCCAACACAAAGA--TGGTGATGAATTTATGGTA 1496 ||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||| Sbjct 1429 TTGAGAGTTTAGATCAAATTTGGTTATCCAACACAAACACATGGTGATGAATTTATGGTA 1488 Query 1497 CATACATATTCATGTAATAGTTCTACTCTTGTTATCCCTTATAAAAGATGTGTTTGT 1553 |||| | | ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1489 CATA--T-T-CATGTAATAGTTCTACTCTTGTTATCCATTATAAAAGATGTGTTTGT 1541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58316165095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5