BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32520.1
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320991 jgi|Araly1|320991|fgenesh1_pm.C_scaffold_4001048 1153 0.0
> Ahg320991 jgi|Araly1|320991|fgenesh1_pm.C_scaffold_4001048
Length=720
Score = 1153 bits (624), Expect = 0.0
Identities = 689/721 (96%), Gaps = 2/721 (0%)
Strand=Plus/Plus
Query 95 ATGGCGGATTC-AGCTTTCAGGAAAATTCAGATCCAAAGAGATGACACTACATTTGATGC 153
||||| ||||| | |||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCCGATTCTA-CTTTCAAGAAAATCCAGATCCAAAGAGATGACACTACATTCGATGC 59
Query 154 CTATGTGGTCGGTAAAGATGATGCGCCTGGGATTGTGGTGATTCAAGAATGGTGGGGTGT 213
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 60 CTATGTGGTTGGTAAAGATGATGCACCGGGGATTGTGGTGATTCAAGAATGGTGGGGTGT 119
Query 214 TGACTTTGAGATCAAGAACCATGCTATTAAAATCTCACAACTTGAGCCTGGATTCAAAGC 273
||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 120 TGACTTTGAGATCAAGAACCACGCTATTAAAATCTCACAACTTGAACCTGGTTTCAAAGC 179
Query 274 CCTTATACCTGACTTGTATCGAGGAAAGGTTGGTTTGGATACTGCAGAGGCACAGCATCT 333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CCTTATACCTGACTTGTATCGAGGAAAGGTTGGTTTGGATACTGCAGAGGCACAGCATTT 239
Query 334 AATGGATGGCCTTGATTGGCCAGGTGCTATCAAAGATATCCGCGCTTCTGTTAATTGGCT 393
||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||||||
Sbjct 240 AATGGATGGCCTTGACTGGCCTGGTGCCATCAAAGATATCCGCGCTTCTGCTAATTGGCT 299
Query 394 AAAATCCAATGGCTCAAAAAAGGTTGGTGTCACTGGAATGTGCATGGGAGGTGCATTAGC 453
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 AAAATCCAATGGCTCTAAAAAGGTTGGTGTGACTGGAATGTGCATGGGAGGTGCATTAGC 359
Query 454 TATAGCTAGCTCTGTATTGGTTCCTGAGGTGGATGCTGTTGTTGGATTCTATGGAACCCC 513
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 360 TATAGCTAGCTCTGTTTTGGTTCCAGAGGTGGATGCTGTTGTTGGATTTTATGGAACCCC 419
Query 514 TTCCTCAGAGCTCGCAGATCCAGCACAAGCTAAGGCACCTATTCAGGCTCATTTTGGAGA 573
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTCCTCAGAGCTTGCAGATCCGGCACAAGCCAAGGCACCTATTCAGGCTCATTTTGGAGA 479
Query 574 GCTCGACAATTTTGTCGGTTTTTCTGATGTCACGGCAGCAAAGAATCTCGAAGAGAAGCT 633
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 480 GCTTGACAATTTTGTCGGTTTCTCTGATGTCACGGCAGCAAAGAATCTAGAAGAGAAGCT 539
Query 634 GAAAGCGTCTGGAGTAGCACATGAAGTTCACATCTATCCAGGTAATGGACACGCGTTCTT 693
||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 540 GAAAGCGTCGGGAGTAGCACATGAAGTTCACATCTATCCAGGAAACGGGCACGCGTTCTT 599
Query 694 GAACAGGAGTCCAGAAGGAGTGAGCAGAAGGAAAAGCATGGGACTTTCTGATGAAGATGA 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAACAGGAGTCCAGAAGGAGTGAGCAGAAGGAAAAGCATGGGACTTTCTGATGAAGATGA 659
Query 754 AGCCGCAGTGGAGCTTGCTTGGTCTCGCTTCACCTCCTGGATGAAACAGTACTTGGCTTA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCCGCAGTGGAGCTTGCTTGGTCTCGCTTCACCTCCTGGATGAAACAGTACTTGGCTTA 719
Query 814 A 814
|
Sbjct 720 A 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41668348281
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5