BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32640.1 Length=2134 Score E Sequences producing significant alignments: (Bits) Value Ahg482188 jgi|Araly1|482188|fgenesh2_kg.4__1248__AT2G32640.2 1757 0.0 > Ahg482188 jgi|Araly1|482188|fgenesh2_kg.4__1248__AT2G32640.2 Length=2075 Score = 1757 bits (951), Expect = 0.0 Identities = 1089/1152 (95%), Gaps = 23/1152 (2%) Strand=Plus/Plus Query 94 TTGTCATGGTGGTTCTGCAAATTCATCAGTTCAATGGGTTCGTTAGTTCCGTATCAAGGG 153 ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| Sbjct 25 TTGTCATGGTGGTTCTGCAAATTCAACAATTCAATGGGTTCGTTAATTCCGTATCAAGGG 84 Query 154 CTCAGACAAACCAAGGAAGAAGGAGAGCTTCGACGACAGTGTGCGTTCAAACACAATTGG 213 ||| |||||||| |||||||||||||||||||| |||||| |||||| || || Sbjct 85 CTCGGACAAACCGAGGAAGAAGGAGAGCTTCGAAGACAGTATGCGTT----CA-AA---- 135 Query 214 CTCCCTCTCTTACACAGAAGATAATGGAG-AGTATTTCAGTTGGTGGAGAAGCTGGAGGT 272 | ||| | |||||||||||| || ||||||||||||||||||||||||||| Sbjct 136 --------C--ACA-A-AAGATAATGGAGAAG-ATTTCAGTTGGTGGAGAAGCTGGAGGT 182 Query 273 GCTGGTGGTGCTTACTCTTATAATGCCTTGAAGAGACTTGACAATATTTGGTCCAACATA 332 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 183 GCTGGTGGTGCTTATTCTTACAATGCCTTGAAGAGACTTGACAATATTTGGTCCAACATA 242 Query 333 TGTACTCAACCAACAGGACCACAAGAAACTCAGCAAATTGTTTCTAGGGTATCTGGTTTT 392 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 243 TGTACTCAACCGACAGGACCGCAAGAAACTCAGCAAATTGTTTCTAGGGTATCTGGTTTT 302 Query 393 TCTCAAGATTATAGTATGGGGAATAATCTCGTTGGAACCTTTGACATAGTGGTTTGTGGG 452 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 TCTCAAGATTATGGTATGGGGAATAATCTCGTTGGAACCTTTGACATAGTGGTTTGTGGG 362 Query 453 GGTACTTTGGGGATTTTTCTAGCCACGGCTCTATGTGCCAAGGGTTTAAGAGTCGCTGTG 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 GGTACTTTGGGGATTTTTCTAGCCACGGCTCTATGTGCCAAGGGTTTAAGAGTCGCTGTG 422 Query 513 GTGGAGAGAAATGCAATCAAAGGGAGAGATCAAGAATGGAATATCTCAAGAAAAGAGATG 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 GTGGAGAGAAATGCAATCAAAGGGAGAGATCAAGAATGGAATATCTCAAGAAAAGAGATG 482 Query 573 AAAGAACTGACTGAAGTCAGAGTTTTAACCGAAGATGAGATCGAAGAAGTAATTGCTGCA 632 ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 483 AAAGAGCTGATTGAAGTCGGAGTTTTAACCGAAGATGAGATCGAAGAAGTAATTGCAGCA 542 Query 633 AAGTTCAATCCGAACAGATGTGGATTTGAGAATCTTGGTGATATATGGGTTGAAGATATT 692 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 543 AAGTTTAATCCGAACAGATGTGGGTTTGAGAATCTTGGTGATATATGGGTTGAAGATATT 602 Query 693 CTTAACCTCGGCGTTTCCCCAGCCAAACTTGTGGAAACTGTAAAACAACGTTTCATTTCT 752 || |||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||| Sbjct 603 CTGAACCTCGGCGTTTCCCCAGCTAAACTTGTGGAAACTGTGAAACGACGTTTTGTTTCT 662 Query 753 CTTGGTGGAGTCATTTTAGAAGACTCCAGCCTCTCGAGCATCGTCATCTACAATGATTTA 812 |||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 663 CTTGGTGGAGTCATATTAGAAGACTGCAGCCTCTCGAGCATCGTCATCTACGATGATTTA 722 Query 813 GCTGTTATGCAACTTTCTAAAGGTGACACATTATCTTCCCGTCTCGTTATTGATGCCATG 872 |||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||| Sbjct 723 GCTGTTATGCAACTTTCTAAAGGTGACACATTATCTTCCCGTCTGGTCATCGATGCAATG 782 Query 873 GGAAACTTTTCTCCTATTCTGAAGCAGATCAAACGTGGTAGAAAGCCAGATGGAATGTGC 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 GGAAACTTTTCTCCTATTCTGAAGCAGATCAAACGTGGTAGAAAGCCAGATGGAATGTGC 842 Query 933 CTTGTTGTTGGATCTTGTGCTCATGGGTTTAAAGAGAACTCATCAAGCGACGTTATATAT 992 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 843 CTTGTTGTTGGATCTTGTGCTCATGGGTTTAAGGAGAACTCATCAAGCGACGTTATATAT 902 Query 993 AGCAGTTCATCGGTGACCAGAGTTGCAGATTCCAATGTACAACTCTTTTGGGAGGCTTTC 1052 || |||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct 903 AGTAGTTCATCGGTGACCAAAGTTGCAGATTCTAATGTACAACTCTTTTGGGAGGCCTTC 962 Query 1053 CCGGCTGGCTCTGGTCCATTAGACCGCACTACTTACATGTTCACTTACACTGAACCGCAA 1112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 CCGGCTGGCTCTGGTCCATTAGACCGCACTACTTACATGTTCACTTACACTGAACCGCAA 1022 Query 1113 TCAACATCTCCGAGTTTAGAGGATTTACTCGAAGAATACTGGAAACTGATGCCAAAATAC 1172 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1023 TCAACATCTCCGAGTTTAGAGGATTTACTCGAAGAATACTGGAAATTAATGCCAAAATAC 1082 Query 1173 CAAGGAGTCTCTCTTGATGAATTGGAAATACTGAGAGTTGTATACGGAATCTTTCCTACA 1232 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 CAAGGAGTCTCTCTTGATGAATTGGAAATACTGAGAGTTGTATACGGAATCTTTCCTACT 1142 Query 1233 TACCGAAATAGT 1244 ||||| |||||| Sbjct 1143 TACCGGAATAGT 1154 Score = 1192 bits (645), Expect = 0.0 Identities = 786/851 (92%), Gaps = 21/851 (2%) Strand=Plus/Plus Query 1242 AGTCCGTTGCCAGCTGCATTTGATCGTGTTCTACAGTTTGGTGATGCTAGCGGTATTCAA 1301 ||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1241 AGTCCATTGCAAGCAGCATTTGATCGTGTTCTACAGTTTGGTGATGCTAGCGGCATTCAG 1300 Query 1302 TCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAAT 1361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 TCACCTGTTTCATTTGGGGGTTTTGGAAGTTTGACCAGACACCTTGGAAGATTGTCCAAT 1360 Query 1362 GGAATCTATGACGCAATAGATGGAGATCTTCTGGACTCTGACAGCTTATCAAAGCTAAAT 1421 ||||||||||| |||||| | || ||| |||||||| ||||||||||||||||||||||| Sbjct 1361 GGAATCTATGAAGCAATAAACGGGGATTTTCTGGACACTGACAGCTTATCAAAGCTAAAT 1420 Query 1422 CCTTATATGCCAAACTTGAGCGCATCATGGCTGTTTCAAAGAGCAATGTCTGCAAAGCAA 1481 |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1421 CCTTATATGCCAAACTTGAGTGCATCATGGTTGTTTCAAAGAGCAATGTCTGCAAAGCAA 1480 Query 1482 CAGCTCGATGTTTCCCGTGGCTTCACCAATGAGCTTCTCCATGTAAATTTCAGTTGCATG 1541 || ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1481 CAACTCGATGTTTCCCCTGGCTTCACCAACGAGCTTCTCCATGTGAATTTCAGTTGCATG 1540 Query 1542 CAGAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATACAGTTTGGTCCT 1601 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1541 CAGAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATTCAGTTTGGTCCT 1600 Query 1602 CTAGCAAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGATAATTCCGTCAATATTC 1661 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1601 CTAGCGAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGATAATTCCGTCAATATTC 1660 Query 1662 AGACAGGTTGGGATACCTGTTCTGCTTGATTGGTCTGTTCATTTTTTCATGCTGGGCTTG 1721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1661 AGACAGGTTGGGATACCTGTTCTGCTTGATTGGTCTGTTCATTTTTTCATGCTGGGCTTG 1720 Query 1722 TATACGCTCCTCTCGGCATACATCGATCCATTGCTAAGGCCGTCTTTGGAAGGACTTCCC 1781 |||||| |||||||||||||||| ||||||||||| ||||||||||| |||||| || || Sbjct 1721 TATACGTTCCTCTCGGCATACATTGATCCATTGCTGAGGCCGTCTTTAGAAGGA-TTACC 1779 Query 1782 T-CAAAGACGAGGTTCGAGTGGAAGAGATGTCTCGAGGCCTGGAAATATGGAGCTGGCCT 1840 | ||||||||| |||||| |||| |||| |||||||||| |||||||||||||||||||| Sbjct 1780 TTCAAAGACGAAGTTCGAATGGATGAGACGTCTCGAGGCTTGGAAATATGGAGCTGGCCT 1839 Query 1841 CGATTATGAGTTGTGATTCTGTTCGTATTTCTGAAGAATGGTACCCTCATCGTCACTGGC 1900 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 1840 CGATTATGAGTTGTGATTCTGTTCGTATTTCTGAAGAATGATACCCTCATCATCACTGGC 1899 Query 1901 TTTTT-GAAAGAATAAAAGTTCATCAGATATCAACATC--TAGTACTTCATAAGCTTCAT 1957 |||| ||||| ||||||||||| || | |||| | || |||||||||| ||||||||| Sbjct 1900 TTTTGAGAAAGTATAAAAGTTCA-CA-ACATCATCGTCCATAGTACTTCACAAGCTTCAT 1957 Query 1958 AAATG-TCTGGCTCATATACACAGAATCAACATCTCAATCCTTAGATTTGATTCACAGGG 2016 ||||| ||||||| ||||||||||||||||||| ||| ||||||||| || | Sbjct 1958 AAATGGTCTGGCTTATATACACAGAATCAACATTTCAGTCCTTAGATCTG-------G-- 2008 Query 2017 TTCTAGAAAACTCCTTCAATATCAGTTTATACACACCTACATTCGAAAAGCTTTGTTCTA 2076 ||||||||||||||||||||||| | |||||| | || |||||||||||||||||||| Sbjct 2009 TTCTAGAAAACTCCTTCAATATCCGCTTATAC-C---TATATTCGAAAAGCTTTGTTCTA 2064 Query 2077 TGAACAGACAA 2087 ||||||||||| Sbjct 2065 TGAACAGACAA 2075 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80294236460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5