BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32690.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482197 jgi|Araly1|482197|fgenesh2_kg.4__1257__AT2G32690.4 599 1e-170
> Ahg482197 jgi|Araly1|482197|fgenesh2_kg.4__1257__AT2G32690.4
Length=757
Score = 599 bits (324), Expect = 1e-170
Identities = 456/516 (88%), Gaps = 24/516 (5%)
Strand=Plus/Plus
Query 7 CTGTCTTCGATCTCTCTTTCATATACACCATATAAAA--CGAACCAGTTAATTATGGGTT 64
|||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 1 CTGTCTTCGATCTCTCTTTCATATTCATCATATAAAACTCGAACCAGTTAATTATGGGTT 60
Query 65 TAATTTCCGGGAAGGTGTGTGTGTTTATCTTTGTATTCGCTCTAGTCGCTGAATTTTCGT 124
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 61 TAATTTCCGGGAAGGTGTGTGTGTTTATCTTTGTATTCGCTCTAGTCGCCGAATTTGCGT 120
Query 125 TCGGAAATGTTGAGGTTAACGACGACAAACACTTTTTCCACAAACCTCGTCCATTTTTAC 184
||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |
Sbjct 121 TCGGAAATGTTGAGGTTAACGACGACAAACACTTTTTTCACAAACCACGTCCATTCTTGC 180
Query 185 ACAAACCTCGTCCATTCCTCCACAAGCATGGCATTTACAAGAAAGGTTTCGGTAAGGGTT 244
||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 181 ACAAACCTCGTCCATTCTTCCACAAACATGGCATTTACAAGAAGGGTTTTGGTAAGGGTT 240
Query 245 TGggcggtggaggcggtctaggcggcggaggtggtctaggaggcggtggtggcctaggag 304
||||||| |||||||||||||| ||||| ||| ||| | | ||||||
Sbjct 241 TGGGCGGCGGAGGCGGTCTAGGAGGCGG---TGG---AGG------T-----C-TAGGAG 282
Query 305 gcggtggaggtttaggcggtggtggaggtttaggcggcggtggtggtctaggaggcggta 364
||||||||||||||||||||||||| ||| |||| || || || ||||||||||||||||
Sbjct 283 GCGGTGGAGGTTTAGGCGGTGGTGGCGGTCTAGGAGGAGGAGGGGGTCTAGGAGGCGGTA 342
Query 365 gcggtttgggaggaggagggggtctaggaggcggtagcggtttgggaggaggagggggtc 424
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 343 GTGGTTTGGGAGGAGGAGGGGGTCTAGGAGGCGGTAGCGGTTTAGGAGGAGGAGGGGGTC 402
Query 425 taggaggtggtggtggtggtggt-ttaggaggaggaggtggattgggtggtggag-ctgg 482
|||| || ||||||||||||||| || ||||||||||| ||||| || ||||| | | ||
Sbjct 403 TAGGCGGAGGTGGTGGTGGTGGTGTT-GGAGGAGGAGGAGGATTTGGCGGTGGTGGC-GG 460
Query 483 aggaggatacggtggtggtgctggaggaggacttgg 518
|||||| | ||| ||||| || || || ||| ||||
Sbjct 461 AGGAGGTTTCGGCGGTGGAGCCGGTGGTGGATTTGG 496
Score = 475 bits (257), Expect = 2e-133
Identities = 457/548 (83%), Gaps = 36/548 (7%)
Strand=Plus/Plus
Query 331 ggtttaggcggcggtggtggtctaggaggcggtagcggtttgggaggaggagggggtcta 390
||||| |||||||| || ||||||||||||||| | ||| | ||||| || || ||| ||
Sbjct 237 GGTTTGGGCGGCGGAGGCGGTCTAGGAGGCGGTGGAGGTCTAGGAGGCGGTGGAGGTTTA 296
Query 391 ggaggcggtagcggtttgggaggaggagggggtctaggaggtggtggtggtggtggttta 450
|| || ||| ||||| | ||||||||||||||||||||||| ||| ||||| ||| |
Sbjct 297 GGCGGTGGTGGCGGTCTAGGAGGAGGAGGGGGTCTAGGAGGCGGTAGTGGT-TTGG--GA 353
Query 451 ggaggaggaggtggattg-ggtggtggagctggaggaggatacggtggtggtgctggagg 509
|||||||| ||| | | || ||| | | | |||||| | || || ||| || |||
Sbjct 354 GGAGGAGGGGGTCTA-GGAGGCGGTAGCGGTTTAGGAGG--A-GGAGGGGGT-CT--AGG 406
Query 510 aggacttggaggcggaggtggaattggaggaggaggaggctttggcggtggagggggagg 569
||| || || || ||||| |||||||||||||||| ||||||||||| || |||||
Sbjct 407 CGGA---GGTGGTGGTGGTGGTGTTGGAGGAGGAGGAGGATTTGGCGGTGGTGGCGGAGG 463
Query 570 aggattcgggggcggagccggtggtggaTTTGGTAAAGGCATTGGTGGTGGAGGAGGTCT 629
||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 AGGTTTCGGCGGTGGAGCCGGTGGTGGATTTGGTAAAGGCATTGGTGGTGGAGGAGG--- 520
Query 630 TGGAGGAGGTTATGTTGGTGGTGGCCATCACTGATGA--G---T-GGTGAGGCTCATGCT 683
| || || |||||||||||||||||||||| | | | |||||||||||
Sbjct 521 T--------TT-TGGTGGTGGTGGCCATCACTGATGACGGCATTAATTAAGGCTCATGCT 571
Query 684 CATGCATTCGTAACGTTGTTATATTATTTAATTAAATGGA-AAATGATAAATTAATTATT 742
|||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||
Sbjct 572 CATGCATTCGTAACGTTGTTATATTATTTAATCAAAT-GATAAATGAT-AATTAATTATT 629
Query 743 GCAATAAAATGATACATTAGCAATTGTGTATGTCGTTATTTTTATTTTGAGTCGCATTGT 802
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 630 ACAATAAAATGATACATTAGCAATTGTGTATGTCGTTATTTT-ATTTTGAGTCGCATTGT 688
Query 803 ATGCTGATTCCATATGTTCGGCTTTGGTCGGTTTCAAGTGTGGTTAATAAAATGGTTATT 862
||| ||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |
Sbjct 689 ATGATGATTCCATATGTTCTGCTTTGGTTGGTTTCAAGTTTGGTTAATAAAATGGTTACT 748
Query 863 TTACTTTT 870
||||||||
Sbjct 749 TTACTTTT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5