BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32710.1 Length=1411 Score E Sequences producing significant alignments: (Bits) Value Ahg901082 jgi|Araly1|901082|Al_scaffold_0004_1732 1000 0.0 > Ahg901082 jgi|Araly1|901082|Al_scaffold_0004_1732 Length=837 Score = 1000 bits (541), Expect = 0.0 Identities = 739/826 (89%), Gaps = 47/826 (6%) Strand=Plus/Plus Query 130 ggaggtggaggtgAATCCTCTATTGCTTTAATGGATGTTGTTTCACCTTCTTC--C-TCT 186 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| Sbjct 34 GGAGGTGGAGGTGAATCCTCTATAGCTTTAATGGATGTTGTTTCACCTTCTTCTTCTTCT 93 Query 187 TCTTCACTTGGTGTTTTAACTCGAGCTAAATCTCTAGCTCT------TCAACAACAACAA 240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 94 TCTTCACTTGGTGTTTTAACTCGAGCTAAATCTCTAGCTCTCCAACAACAACAACAACAA 153 Query 241 CAACGCTGTCTTCTTCAAAAACCCTCTTCTCCTTCTTCGTTACCACCGACTTCTGCTTCT 300 |||||| ||||||||| ||| ||||| | | |||| |||||||||||||||||| ||||| Sbjct 154 CAACGCCGTCTTCTTCCAAAGCCCTC-T-T-CTTCGTCGTTACCACCGACTTCTCCTTCT 210 Query 301 CCTAATCCACCGTC-AAAGCAGAAGATGAAGAAGAAGCAGCAGCAGATGAACGATTGTGG 359 |||||||||||||| ||| ||| | | ||| |||||| |||||||||| ||||||||||| Sbjct 211 CCTAATCCACCGTCGAAA-CAG-A-A-GAATAAGAAGAAGCAGCAGATTAACGATTGTGG 266 Query 360 TTCGTATCTTCAGCTACGGAGTCGTCGGCTTCAGAAGAAACCACCAATTGTTGTGATTCG 419 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 267 TTCGTATCTTCAGCTACGGAGTCGTCGTCTTCAGAAGAAACCTCCAATTGTTGTGATTCG 326 Query 420 TTCTACTAAACGGAGGAAACAGCAACGGAGGAATGAGACATGCGGAAGAAACCCTAACCC 479 ||||||||||| | | | ||| || ||||||||||||| |||||||||||| Sbjct 327 TTCTACTAAAC----G-----G--A-GGA--AA-GAGACATGCGGAACAAACCCTAACCC 371 Query 480 TAGGAGTAATTTGGATTCGA----T---TCG---TG-G-TGATGGGTCTAGGTCTGATTC 527 ||| |||||||||||||| | ||| || | ||||||||||||||||||||| Sbjct 372 TAGTTCTAATTTGGATTCGATTCGTGGCTCGATTTGTGCTGATGGGTCTAGGTCTGATTC 431 Query 528 TGTTTCTGAAAGTGTTGTCTTTGGTAAAGACAAGGATTTGATTTCTGAAATCAATAAAGA 587 |||||||| |||||||||||||||||||| ||||| ||| ||| |||||||| ||||| Sbjct 432 GGTTTCTGAGAGTGTTGTCTTTGGTAAAGATAAGGAATTGGTTTGTGAAATCAGCAAAGA 491 Query 588 TCCAACCTTTGGCCAAAATTTCTTCGACCTT---GAAGAAGAACACACTCAAAGCTTCAA 644 ||| ||||||| |||||||||||||| ||| |||||||||| ||||||||||||||| Sbjct 492 TCCTTCCTTTGGGCAAAATTTCTTCGAGCTTGAAGAAGAAGAACCCACTCAAAGCTTCAA 551 Query 645 CAGGACCACAAGGGAATCCACACCATGCAGTTTGATAAGAAGGCCTGAAATCATGACAAC 704 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 552 TAGGACCACAAGGGAATCCACACCATGCAGTTTGATAAGAAGGCCTGAAATCATCACAAC 611 Query 705 CCCGGGATCGTCTACAAAGCTTAACATTTGTGTAAGTGAAAGCAACCAGAGAGAAGACAG 764 ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| || Sbjct 612 CCCGGGATCGTCTACAAAGCTTAACATCTGTGTAAGTGACAGCACCCAGAGAGAAGAGAG 671 Query 765 TTTGTCACGCAGCCATCGTCGCCGACCAACTACACCTGAAATGGACGAGTTTTTCTCGGG 824 |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 672 TTTGTCTCGCAGCCATCGTCGCCTACCAACCACACCTGAAATGGACGAGTTTTTCTCGGG 731 Query 825 TGCTGAAGAAGAACAACAGAAGCAATTCATTGAGAAGTACAACTTTGATCCTGTGAACGA 884 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 732 GGCTGAAGAAGAACAACAGAAACAATTCATTGAGAAGTACAACTTTGATCCTGTGAACGA 791 Query 885 ACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAG 930 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 ACAACCACTACCAGGACGGTTTGAATGGACGAAGGTAGATGATTAG 837 Score = 69.4 bits (37), Expect = 7e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 61 ATGGGGAAATACATAAGAAAGAGCAAAATCGACggagctggag 103 |||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1 ATGGGGAAATACATAAGAAAGAGCAAAATCGATGGAGGTGGAG 43 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52754989325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5