BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G32720.1

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482208 jgi|Araly1|482208|fgenesh2_kg.4__1268__AT2G32720.1        1085    0.0  


> Ahg482208 jgi|Araly1|482208|fgenesh2_kg.4__1268__AT2G32720.1
Length=700

 Score = 1085 bits (587),  Expect = 0.0
 Identities = 667/705 (95%), Gaps = 8/705 (1%)
 Strand=Plus/Plus

Query  4    CTCTTGTATAAAGTTTTGAGCTTTAAGTCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG  63
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    CTCTTGTATAAAGTTTTTAGCTTTAAATCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG  60

Query  64   TAGACAAGAATCAAACAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT  123
            |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TAGACAAGAAT----CAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT  116

Query  124  TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG  176

Query  184  ACCAAGTTTCTTGAAGACCATCCAGGTGGGGACGATGTTCTCTTGTCTTCAACAGGTAAG  243
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  177  ACCAAGTTTCTTGAAGACCATCCAGGTGGGGATGATGTTCTCTTGTCTTCAACAGGTAAG  236

Query  244  GATGCAACGGATGATTTTGAGGACGTGGGTCACAGCGAGAGTGCAAGAGAAATGATGGAG  303
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  237  GATGCAACCGATGATTTTGAGGACGTGGGTCATAGCGAGAGTGCAAGAGAAATGATGGAG  296

Query  304  CAGTACTACGTAGGAGAGATTGATCCAACAACAATACCAAAGAAAGTCAAATACACACCT  363
            || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct  297  CAATACTACGTAGGAGAGATTGATCCGACAACAATACCAAAGAAAGTCAAATACGCACCT  356

Query  364  CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGCTCCTCCAG  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  357  CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGATCCTCCAA  416

Query  424  TTCCTCGTACCCCTTGCCATTCTTGGTTTAGCAGTCGGAATCCGTATCTACACCAAATCA  483
            ||||| |||||||||||||| || |||||||||||||| || || || ||||||||||||
Sbjct  417  TTCCTTGTACCCCTTGCCATACTCGGTTTAGCAGTCGGGATTCGCATTTACACCAAATCA  476

Query  484  GGGTAGGCTTCtt-tttttt-CTGAGCATTACTTCCTTATATCTTATATATAGAGAGAAA  541
            ||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||
Sbjct  477  GGGTAGGCTTCTTCTTTTTTTCTGAGCATTACTACCATATATCTTATATATAGAGAGAAA  536

Query  542  GATTCAAGTCTTTTGAAAAGACAAATCTGAAAGTCTCTCCCTTTGTTATTGTCTCTTCCC  601
            |||| ||||||||||||||||||||||| ||||||||||||||||||  | ||| |||||
Sbjct  537  GATTTAAGTCTTTTGAAAAGACAAATCTCAAAGTCTCTCCCTTTGTTCGTCTCTGTTCCC  596

Query  602  ATATTTTGCTGTTTGAATGTATTTTGGATAATTTCTTATCTATTGTGGTGTAACTGCATA  661
            |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct  597  ATATTTTGTTGTTTGAATGTGTTTTGGACAATTTCTTATCTATTGTGGTGTAACTGCATA  656

Query  662  TAAACAACAGTCTTGTTGGTGTTTTTGCCTT-ATGCAACTAATGA  705
            | ||||||||||||||||||| ||||||||| | |||||||||||
Sbjct  657  TGAACAACAGTCTTGTTGGTGGTTTTGCCTTGA-GCAACTAATGA  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26800410651


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5