BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32720.1 Length=728 Score E Sequences producing significant alignments: (Bits) Value Ahg482208 jgi|Araly1|482208|fgenesh2_kg.4__1268__AT2G32720.1 1085 0.0 > Ahg482208 jgi|Araly1|482208|fgenesh2_kg.4__1268__AT2G32720.1 Length=700 Score = 1085 bits (587), Expect = 0.0 Identities = 667/705 (95%), Gaps = 8/705 (1%) Strand=Plus/Plus Query 4 CTCTTGTATAAAGTTTTGAGCTTTAAGTCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG 63 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 CTCTTGTATAAAGTTTTTAGCTTTAAATCTCAGAGTCAGGTTTTGGTGGGTTAATTCTGG 60 Query 64 TAGACAAGAATCAAACAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT 123 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TAGACAAGAAT----CAAACAATGGGAGACGAAGCAAAGATCTTCACTCTTTCAGAAGTT 116 Query 124 TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 117 TCAGAGCATAATCAAGCTCATGACTGTTGGATTGTCATCAATGGAAAGGTGTACAATGTG 176 Query 184 ACCAAGTTTCTTGAAGACCATCCAGGTGGGGACGATGTTCTCTTGTCTTCAACAGGTAAG 243 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 177 ACCAAGTTTCTTGAAGACCATCCAGGTGGGGATGATGTTCTCTTGTCTTCAACAGGTAAG 236 Query 244 GATGCAACGGATGATTTTGAGGACGTGGGTCACAGCGAGAGTGCAAGAGAAATGATGGAG 303 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 237 GATGCAACCGATGATTTTGAGGACGTGGGTCATAGCGAGAGTGCAAGAGAAATGATGGAG 296 Query 304 CAGTACTACGTAGGAGAGATTGATCCAACAACAATACCAAAGAAAGTCAAATACACACCT 363 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 297 CAATACTACGTAGGAGAGATTGATCCGACAACAATACCAAAGAAAGTCAAATACGCACCT 356 Query 364 CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGCTCCTCCAG 423 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 357 CCTAAACAGCCTCACTACAATCAAGACAAGACCTCTGAATTCATAATCAAGATCCTCCAA 416 Query 424 TTCCTCGTACCCCTTGCCATTCTTGGTTTAGCAGTCGGAATCCGTATCTACACCAAATCA 483 ||||| |||||||||||||| || |||||||||||||| || || || |||||||||||| Sbjct 417 TTCCTTGTACCCCTTGCCATACTCGGTTTAGCAGTCGGGATTCGCATTTACACCAAATCA 476 Query 484 GGGTAGGCTTCtt-tttttt-CTGAGCATTACTTCCTTATATCTTATATATAGAGAGAAA 541 ||||||||||||| |||||| |||||||||||| || ||||||||||||||||||||||| Sbjct 477 GGGTAGGCTTCTTCTTTTTTTCTGAGCATTACTACCATATATCTTATATATAGAGAGAAA 536 Query 542 GATTCAAGTCTTTTGAAAAGACAAATCTGAAAGTCTCTCCCTTTGTTATTGTCTCTTCCC 601 |||| ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| Sbjct 537 GATTTAAGTCTTTTGAAAAGACAAATCTCAAAGTCTCTCCCTTTGTTCGTCTCTGTTCCC 596 Query 602 ATATTTTGCTGTTTGAATGTATTTTGGATAATTTCTTATCTATTGTGGTGTAACTGCATA 661 |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 597 ATATTTTGTTGTTTGAATGTGTTTTGGACAATTTCTTATCTATTGTGGTGTAACTGCATA 656 Query 662 TAAACAACAGTCTTGTTGGTGTTTTTGCCTT-ATGCAACTAATGA 705 | ||||||||||||||||||| ||||||||| | ||||||||||| Sbjct 657 TGAACAACAGTCTTGTTGGTGGTTTTGCCTTGA-GCAACTAATGA 700 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26800410651 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5