BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G32870.1
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482229 jgi|Araly1|482229|fgenesh2_kg.4__1289__AT2G32870.1 1995 0.0
Ahg933866 jgi|Araly1|933866|scaffold_401854.1 1070 0.0
> Ahg482229 jgi|Araly1|482229|fgenesh2_kg.4__1289__AT2G32870.1
Length=1531
Score = 1995 bits (1080), Expect = 0.0
Identities = 1260/1345 (94%), Gaps = 19/1345 (1%)
Strand=Plus/Plus
Query 278 aaaaaaaaaCCCTCCTACGGTATATTTGACGACCATTATCCTCATAATGGGTCTACTGTC 337
|||||| |||| | |||||||| ||| ||||||||| ||||||||||||||||||| |||
Sbjct 195 AAAAAAGAACCATACTACGGTAAATTAGACGACCATCATCCTCATAATGGGTCTACCGTC 254
Query 338 ACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTGGT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ACTTGAAGACACCATAAAAGAGAAGCTAAAGGACCGCAAAAACGCTCACTTCATGTTGGT 314
Query 398 TGACGGAATGTCTAAGCTACTGACGGAAAAAGTTAAGAATTGTCAGTCATTGGATTTCCA 457
||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 315 TGATGGAATGTCTAAGCTACTGACTGAAAAAGTTAACAATTGTCAGTCAGTGGATTTCCA 374
Query 458 AGTTTCTGGTGTCAAATGGAGGTTGGTTATACGCTTATCTAGGGGAAGAAAAGACCATCT 517
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 AGTTTCTGGTATCAAATGGAGGTTGGTTATACGCTTATCTAGGGGAAGAAAAGACCATCT 434
Query 518 ATCTTTTGTTCTGGAGATCACAGATGAAAAGTGTACCGGGTCTACTTGGGACGTCAAATT 577
||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 435 ATCCTTTGTTCTCGAGATCACAGATGAAAAGTGTACCGGGTCTAATTGGGAAGTCAAATT 494
Query 578 CAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCAGATTATTGCTTCGTTTTGGTGGG 637
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 495 CAACTTCAAAATCGGCATAGTCCCTCAGACTGGACCTGATTATTGCTTCGTTTTGGTGGG 554
Query 638 GCATCAAAACGaaaaaaaaCGTAGTCAAGGGTTAGCCAACTTCATATCACACACGGATTT 697
|||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||
Sbjct 555 GCATCAAAACGAAAAACAACGTATTCAAGGGCTAGCCAACTTTATATCACACACGGATTT 614
Query 698 GAAGGAGAGGTTTCTTGTGAACGACAAAGCGGGGTTCTATGCCGAGATAAGCGATGTCCA 757
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 615 GAAGGAGAGGTTTCTTGTGAACGACATAGCGGGTTTCTATGCCGAGATAAGCGATGTCCA 674
Query 758 ACCAAACTTCCCCGTTACCCGTATCCCTCGAACAATGGGGACAGCAGAACGCTTTAAACT 817
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 675 ACCAAACTTCCCCGTTACTCGTATCCCTCGAACAATGGGCACAGCCGAACGCTTTAAACT 734
Query 818 GATAGAGTTTTCTCCGAAAAACTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTT 877
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GATAGAGTTTTCTCCGAGGAACTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTT 794
Query 878 CGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CGATGGTGAAGAGCATTCTTCTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT 854
Query 938 AATGTACCCAAAAGGAAACGGAGATGGAAAAGGAAATTCGTTGTCTTTGTATTTGTTTGC 997
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 855 AATGTACCCAAAAGGAAACGGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGTTTGC 914
Query 998 ATCCGATTACGTCACCAATGGTCCTAAGGGTGGAACATTGGCCATCTATAAATTGAGAGT 1057
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 915 ATCCGATTACGTCACAAATGGTCCTAAGGGTGGAACATTGGCCATCTACAAATTGAGAGT 974
Query 1058 GTTGGACCAACTCAATCGCAATCACTGTGAAACTGAGTGTAGATATTGGTTTCCTTATAA 1117
||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 975 GTTGGACCAACTCCATCGCAATCACTGTGAAACTGATTGCAGATATTGGTTTCCTTATAA 1034
Query 1118 CCCTGTTAATCAAATGGATTCCTTATGGGGACGTCCCAAGTTTTTGCCGCTGGAGGAACT 1177
|| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1035 TCCGGTTGATCCAATGGATTCCTTATGGGGACGTCACAAGTTTTTGCCGCTGGAGGAACT 1094
Query 1178 CCACAAAT-CTTCGAGGGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGATCT 1236
|||||| | | |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1095 CCACAA-TGCGTCGAAAGGATTTCTAGTGAACGATCAGATATATATCGGTGTTGATATCT 1153
Query 1237 CAATTGTATCCACTACTGAGTATCTCTGATGCGCATTAATGGATTCGATCAAGACCAGAA 1296
||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||| ||
Sbjct 1154 CAATTGTATCCACTACTGAGTATCTCTGATGCGTTTTAACGAATTAGATCAAGACCACAA 1213
Query 1297 GAATGAATAGCTCATGTTGAACCTATCTACCAGTTATATATTCTGCCATATTGTGATGTG 1356
|||||||||||| || |||||||||||||| | |||| | || |||||||||||||||
Sbjct 1214 AAATGAATAGCTCCTGCTGAACCTATCTACC--T-ATAT-T-CTACCATATTGTGATGTG 1268
Query 1357 TGTTTAGATATCAGTGAATGATACAAACATGCATGTTTATACAAAA-TAATAAAATAAGC 1415
||||||||||||| ||||||||||||||||||| | |||||||||| ||||| |||||||
Sbjct 1269 TGTTTAGATATCAATGAATGATACAAACATGCA-GATTATACAAAAATAATAGAATAAGC 1327
Query 1416 GACGGATCGAATCGGTTGATTGTATTGAATGTTACAATAACGTTCAACCGAATCCGTTGC 1475
||||||||||||||||||||||||||| ||| || ||||| ||||||||||||||||||
Sbjct 1328 GACGGATCGAATCGGTTGATTGTATTGTATGGCACGATAACATTCAACCGAATCCGTTGC 1387
Query 1476 TGCAAATTCTCTTATGGAGAA-GAATGCATGCTTGTCTATAAGTACTACCTTTCTT-GTT 1533
||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||
Sbjct 1388 TGCAAATTCTCTTATGGAGAATGA-TGCATGCTTGTCTATAAGTACTAGCTTTCTTTGTT 1446
Query 1534 TGTAATAACAACGATATATCTAT-------GTGTGTGTTAAATATTTTATTCCGACTCTT 1586
||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1447 TGTAATAACAACGATATATCTATAATCTATGTGTGTGTTAAATATTTTATTTTGACTCTT 1506
Query 1587 AAAAAATATAACATATGAAAGAGAT 1611
|||||||||||| ||| ||||||||
Sbjct 1507 AAAAAATATAACTTATAAAAGAGAT 1531
> Ahg933866 jgi|Araly1|933866|scaffold_401854.1
Length=966
Score = 1070 bits (579), Expect = 0.0
Identities = 861/992 (87%), Gaps = 39/992 (4%)
Strand=Plus/Plus
Query 305 GACGACCATTATCCTCATAATGGGTCT-ACTGTCACTTGAAGACACCATAAAAGAGAAGC 363
||||||||| ||||||| ||||||||| || |||| ||||||| | ||||||||||||||
Sbjct 4 GACGACCATCATCCTCAAAATGGGTCTAAC-GTCATTTGAAGAGATCATAAAAGAGAAGC 62
Query 364 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGACGGAATGTCTAAGCTACTGACGG 423
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 63 TAAAGGACCGCAAAAACGCTCACTTCATGTTGGTTGATGGAATGTCTAAGCTATTGACTC 122
Query 424 AAAAAGTTAAGAATTGTCAGTCATTGGATTTCCAAGTTTCTGGTGTCAAATGGAGGTTGG 483
|||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 123 AAAAAGTTAATAATTGTCAGTCATTGGATTTCCATGTTTCTGGTATCAAATGGAGGTTGC 182
Query 484 TTATACGCTTATCTAG-GGGAAGAAAAGACCATCTATCTTTTGTTCTG-GAGATCACAGA 541
|||||||| | || | |||| ||||| |||||||| ||| | || | ||||| |||
Sbjct 183 TTATACGCCCAGCT-GTGGGATTCAAAGATTATCTATCTGTTGCTGTGTG-GATCATAGA 240
Query 542 TGAAAAGTGTACCGGGTCTACTTGGGACGTCAAATTCAACTTCAAAATCGGCATAGTCCC 601
||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||
Sbjct 241 TGAAAAGTGTACCGGATCTAATTGGGAAGTCAAATTCAACTTCAAAATCGGCGTAGTCCC 300
Query 602 TCAGACTGGACCAGA-TTATTGCTTCGTT-TTGGTGGGGCATCAAAACGaaaaaaaaCGT 659
|||||||||||| || || || | | || ||||||||| ||| ||| || |||| | |
Sbjct 301 TCAGACTGGACCTGAATT-TT-CGTATTTCTTGGTGGGGTGTCACAACCAACAAAACCCT 358
Query 660 AGTCAAGGGTTAGCCAACTTCATATCACACACGGAT-TTGAAGGAGAGGTTTCTTGTGAA 718
||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||||
Sbjct 359 CTTCAAGGGTTAGACAACTTCATATTATACACGG-TGTTGAAGGAGAGGTTTCTTGTGAA 417
Query 719 CGACAAAGCGGGGTTCTATGCCGAGATAAGCGATGTCCAACCAAACTTCCCCGTTACCCG 778
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 418 CGACAAAGCGGTTTTCTATGCCGAGATAAGCAATGTCCAACCAAACTTCCCCGTTACCGG 477
Query 779 TATCCCTCGAACAATGGGGACAGCAGAACGCTTTAAACTGATAGAGTTTTCTCCGAAAAA 838
|||||||| ||| || || ||||||||||||||||||||||||||| | ||| ||| ||
Sbjct 478 TATCCCTCCAACCATAGGAACAGCAGAACGCTTTAAACTGATAGAGGTGGCTCGGAACAA 537
Query 839 CTCCAGATTCACCTGGAAGATCACGCAGTTTTCCTCCTTCGA-TGGTGAAGAGCATTCTT 897
||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||| |
Sbjct 538 CTCCAGATTCACCTGGAAGATCACGAAGTTTTCCTCCTTC-ACTGGTGTAGAGCATTCGT 596
Query 898 CTTACGAGTTCACGGTTGGACCACGGAGATGGAAACTAGT-AATGTACCCAAAAGGAAAC 956
|| |||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 597 CTGACGAGTTCACGGTTGGACCACGGAGATGGAGGCTA-TCAATGTACCCAAAAGGTTTT 655
Query 957 GGAGATGGAAAAGGAAATTCGTTGTCTTTGTATTTGTTTGCATCCGATTACGTCACCAAT 1016
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 656 GGAGATGGGAAAGGAAATTCGTTGTCTTTGTATTTGATTGCTTCCGATTACGTCACTGAT 715
Query 1017 GGTCCTAAGGGTGG-AACATTGGCCATCTATAAATTGAGAGTGTTGGACCAACTCAATCG 1075
||||| ||||| || ||||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 716 GGTCCAAAGGG-GGTAACATTGGCTGTCTATAAGTTGAGAGTGTTGGACCAACTCCATCG 774
Query 1076 CAATCACTGTGAAACTGAGTGTAGAT-ATTGGTTTCCTTATAACCCTGTTAATCAAATGG 1134
|||||||| ||||| | | || || ||||||||| || | | |||| | |
Sbjct 775 CAATCACTATGAAATTAACTGC-GAAGATTGGTTTC-TTC-A----T-TTAA-C----G- 820
Query 1135 ATTCCTTATGGGGACGTCCCAAGTTTTTGCCGCTGGAGGAACTCCACAAATCTTCGAGGG 1194
| ||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 821 A--CCT---GGGGACGTAATAAGTTTTTGCCGCTGGAGGAACTCCACAAAGCTTCGAGGG 875
Query 1195 GATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGATCTCAATTGTATCCACTACTG 1254
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 876 GATTTCTAGTGAACGATCAGATATATATCGGTGTTGAGTTCTTAATTGTATCCACTACTG 935
Query 1255 AGTATCTCTGATGCGCATTAATGGATTCGATC 1286
|||||||||||||||||| || ||||||||||
Sbjct 936 AGTATCTCTGATGCGCAT-AACGGATTCGATC 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792031020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5