BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32930.2 Length=1998 Score E Sequences producing significant alignments: (Bits) Value Ahg345050 jgi|Araly1|345050|fgenesh1_pg.C_scaffold_4001392 1888 0.0 Ahg910175 jgi|Araly1|910175|Al_scaffold_0001_429 520 2e-146 > Ahg345050 jgi|Araly1|345050|fgenesh1_pg.C_scaffold_4001392 Length=1383 Score = 1888 bits (1022), Expect = 0.0 Identities = 1258/1365 (92%), Gaps = 43/1365 (3%) Strand=Plus/Plus Query 539 ATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGGGTCGATTCGATCTCCCGACAAA 598 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 ATGTCAGAAACTCAGCAGCAGGTTCAGAACTCTACTGGGTCGATTCGATCTCCCGAGAAA 60 Query 599 ATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAGACAATATGGAGCAATCTAGTCCA 658 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTCAAGATACCTTCAGGAGGATGAAAGTTAATGAAGACAATATGGAGCAATCTAGTCCA 120 Query 659 TATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCTTTCTGAGAACTGGTCAGTGTGGC 718 |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 121 TATCCTGATCGTCCCGGTGAGCGAGATTGTCAGTTCTTTCTGAGAACTGGGCAGTGTGGC 180 Query 719 TATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTATTTAT 778 ||||||||| | ||||| |||||||| ||||||||| |||||||||||||| |||||||| Sbjct 181 TATGGAAACACCTGTCGGTACAATCACCCTCTTACTCATCTTCCACAGGGTGTTATTTAT 240 Query 779 TACAGAGACCAATTGCCTGAGA-GAGTTGGACAGCCTGAC--T--G-------TG-AGAC 825 |||| ||||||||||||||||| || |||||||||||||| | | || |||| Sbjct 241 TACAAAGACCAATTGCCTGAGAGGA-TTGGACAGCCTGACTGTGAGTATTTTCTGAAGAC 299 Query 826 AGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGAATGGTG 884 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | Sbjct 300 AGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCC-AAAGGACAGGAATGGAG 358 Query 885 CTGGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAGCCATGTC 944 ||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| | Sbjct 359 CTGGACCCGTGCTGTTCAATGTTCTCGGTTTTCCTATGCGACAGGGTGAGAAGTCATGCC 418 Query 945 CATATTACATGCAGACAGGATTGTGTCGATTCGGAGTTGCCTGCAAATTCCATCATCCTC 1004 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 419 CGTATTACATGCAGACAGGATTGTGTCGATTCGGGGTTGCCTGCAAATTCCATCATCCTC 478 Query 1005 ATCCTCATTCTCAGCCTTCTAATGGCCACTCTGCATATGCAATGTCCAGCTTTCCGTCTG 1064 | || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 A---TC---CTCAGCCTTCTAATGGCCACTCTGCATATGCAATGTCCAGCTTTCCGTCTG 532 Query 1065 TTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCTGCAACATATGGAG 1124 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 533 TTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGCCTTTGCCTCCTGCAACATATGGAG 592 Query 1125 CTATTCCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTACATGGTTGCACCCT 1184 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 593 CTATGGCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTTCATGGTTGCACCTT 652 Query 1185 CCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTGCATCTAACCCCATTT 1244 ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 653 CCCAAGGCCTTATGCCTCCTCAAGGCTGGGCCACTTACATGGCTGCATCTAACCCCATTT 712 Query 1245 ACAATATGAAAACTCAACTCGACTCCAGTTCTAGCGCATCGGTGGCTGTGACCGTGACAT 1304 ||| | ||||| ||||||| |||||||||||||| ||||||||| ||||| ||||||||| Sbjct 713 ACAGTGTGAAAGCTCAACTTGACTCCAGTTCTAGTGCATCGGTGCCTGTGGCCGTGACAT 772 Query 1305 CACATCATCACAGTTTTTCTGAAAGAGCTGAATGTAGGTTTTTTATGAACACTGGAACTT 1364 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 773 CACATCATCACAGTTTTTCTGAAAGAGCTGAATGTAGGTTTTTTATGAACACCGGAACAT 832 Query 1365 GTAAATATGGTGATGATTGCAAATACAGTCATCCGAAAGAAAGATTGTTACAATCACCAC 1424 |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 833 GTAAATATGGAGATGATTGCAAATACATTCATCCGAAAGAAAGGTTGTTACAATCACCAC 892 Query 1425 CAACTCTCTTGAACCCTATTGTTCTTCCAGCAAGACCAGGACAGCCAGCATGTGGTAACT 1484 ||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct 893 CAAATCTCTTGAACCCTATTGTACTTCCCGCAAGACCAGGACAACCAGCATGTGGTAACT 952 Query 1485 TCAAGGCCTACGGATTTTGCAAGTTTGGAGCAAACTGCAAATTTGATCACTCAATGCTGC 1544 | |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | Sbjct 953 TTAAGGCCTACGGATTCTGCAAGTTTGGAGCAAGCTGCAAATTTGATCACTCAATGCCAC 1012 Query 1545 TAAACCCTTATAACAATACGGGCTTGGCCATGTCTTCTCTGCCTACTCCTTATCCTTATG 1604 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1013 TAAACCCTTATAACAATACGGGCTTGGCCATGTCTTCTCTGCCTACTCCTAATCCTTATG 1072 Query 1605 CTCCACCTGTTTCAACTAATTTGAGGATCTCATCGCCACCAAGCC-CCTCTGATAT-GAC 1662 |||||||||||||||||||| |||||||||||||||||||||||| || ||||| | ||| Sbjct 1073 CTCCACCTGTTTCAACTAATCTGAGGATCTCATCGCCACCAAGCCGCC-CTGAT-TCGAC 1130 Query 1663 TACCCTATCCAATGGTAAACCCGCTGCTGCAGA-AGCTCAAAGCTTGGAGACTGAGAAAC 1721 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1131 TACCCTATCCAATGGTAAACCCGCTGCTGCAGAGA-CTCAAAGCTTGGAGACTGAGAAAC 1189 Query 1722 AAGACGATAGTCCAACAGAACCAGAAAAATCAGAAGTGGAGGACTCATTGCCACCAAACG 1781 ||||||||||||| || |||||||||| ||||||||| |||||||||||||||||| | Sbjct 1190 AAGACGATAGTCCTGCACAACCAGAAAAGTCAGAAGTGCAGGACTCATTGCCACCAAGCC 1249 Query 1782 GCTCTGATTCAACCTCCCTGCCCAATGATAAACCTGAT---G-----C--AG---AGA-- 1826 ||||||||||||||||||| ||||||| |||||||||| | | || ||| Sbjct 1250 GCTCTGATTCAACCTCCCTACCCAATGTTAAACCTGATTCTGAGAATCCGAGTTCAGAGA 1309 Query 1827 CTGAGAAACAAGACGATGATTCTGCAGAACTGGACAGCTCAAAAG 1871 ||||||||||||||||| || ||||| ||| |||||||||||||| Sbjct 1310 CTGAGAAACAAGACGATAATACTGCACAACCGGACAGCTCAAAAG 1354 > Ahg910175 jgi|Araly1|910175|Al_scaffold_0001_429 Length=1236 Score = 520 bits (281), Expect = 2e-146 Identities = 939/1237 (76%), Gaps = 124/1237 (10%) Strand=Plus/Plus Query 537 CCATGTCGGAAACTCAGCAGCAGGTTCAGAACTCTACTGG-GTCGATTCGATCTCCCGAC 595 ||||||| || ||| ||||| || |||| ||| | ||| ||||||||||||| ||||| Sbjct 11 CCATGTCAGACACT---CAGCATGTACAGAGCTCCA-TGGTGTCGATTCGATCTTCCGAC 66 Query 596 AAAATTGAAGATACCTTCAGGAGGATGAAAGTTAATGAAG-ACAATATGGAGCAATCTAG 654 ||||| |||||| |||| |||| ||||||||| |||| || || |||| |||| | Sbjct 67 AAAATCGAAGATGCCTTTAGGAAGATGAAAGTAAATG-AGAACGGCGGGGAGGAATCGAA 125 Query 655 TCCATATCCTGATCGTCCTGGTGAGCGAGATTGCCAGTTCT-TTCTGAGAACTGGTCAGT 713 ||| ||||| |||||||| ||||| |||||||||| |||| || | |||||||||| | Sbjct 126 TCCGTATCCAGATCGTCCCGGTGAAAGAGATTGCCAATTCTATT-TAAGAACTGGTCTCT 184 Query 714 GTGGCTATGGAAACTCTTGTCGATACAATCATCCTCTTACTAATCTTCCACAGGGTATTA 773 |||||||||||| | ||| || ||||||||| | | |||| |||||||||||| | || Sbjct 185 GTGGCTATGGAAGCAGTTGCCGTTACAATCAT-C-C-TACTCATCTTCCACAGGATGTT- 240 Query 774 T-TTATTAC-AGAGACCAATTGCCTGAGAGAGTTGGACAGCC------T--G-A--CTGT 820 | |||| || || || | | ||||||||| |||||| ||| | | | | | Sbjct 241 TCTTATCACAAG-GAGGAGCTCCCTGAGAGAATTGGACTGCCAGATTGTGAGTATTTTCT 299 Query 821 G-AGACAGGAGCCTGTAAGTATGGCCCAACATGTAAATATCACCACCCTAAA-GACAGGA 878 | |||||||||| |||||||| ||| |||| ||||||||||| ||||| ||| || |||| Sbjct 300 GAAGACAGGAGCTTGTAAGTACGGCTCAACTTGTAAATATCATCACCC-AAAGGATAGGA 358 Query 879 ATGGTGCT-GGACCCGTGCTGTTCAATGTTCTCGGTTTGCCTATGCGGCAGGGTGAGAAG 937 | |||| | ||| || ||||||||||| ||||||| |||||||| |||||||||||| Sbjct 359 ACGGTG-TACAACCTGTAATGTTCAATGTTATCGGTTTACCTATGCGTCAGGGTGAGAAG 417 Query 938 CCATGTCCATATTACATGCAG-ACAGG-ATTGTGTC-GATTCGGAGTTGCCTGCAAATTC 994 |||||||| |||||| ||| | || || | | || | ||||||||||||| |||||||| Sbjct 418 CCATGTCCCTATTACCTGC-GAACGGGAACT-TG-CAGATTCGGAGTTGCTTGCAAATT- 473 Query 995 CATCATCCTCATCCTCATTCTCAGCCTTCTAATGGCCA--CT-CTGCATATGCAATGTCC 1051 | || | |||||||| | ||| |||||| || || ||||||||| |||||| Sbjct 474 C--CA--C-CATCCTCA-----A-CCTGATAATGGACATTCTACTGCATATGGAATGTCT 522 Query 1052 AGCTTTCCGTCTGTTGGTTTTCCTTATGCCAGTGGAATGACAATGGTGTCTTTGCCTCCT 1111 |||||||| |||| |||| | ||||| | |||| | |||| || || | || Sbjct 523 AGCTTTCCTTCTGCAAGTTTACAATATGCTAATGGATTAACAA---TG---ATG--T-CT 573 Query 1112 GCAACATATGGAGCTATT-CCACGTCCTCAAGTTCCTCAGTCTCAGGCCTATATGCCCTA 1170 ||||||||| || || || ||||| |||||||||||| | |||| || || | Sbjct 574 ---ACATATGGAACT-TTGCCTCGTCCGCAAGTTCCTCAG--T----CCTACGTG-CCAA 622 Query 1171 -CATGGTTGCACCCTCCCAAGGCCTTTTACCTCCTCAAGGCTGGGCCACTTACATGACTG 1229 ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||| Sbjct 623 TCATGGTTTCACCCTCTCAAGGCCTTTTACCTCCTCAAGGCTGGGCCCCTTACATGGCTG 682 Query 1230 CATCTAACCCCATTTACAATATGAAAACTCAAC-TCG--ACTCCAGTTCTAGCGCATCGG 1286 |||||||| |||| |||||| |||| | ||||| | |||| ||||||| ||| | Sbjct 683 CATCTAACTCCATGTACAATGTGAAGATTCAACCTTATTACTCGGGTTCTAGTGCACCCA 742 Query 1287 TGGCTGTGACCGTGACATCACATCATCA-----CAGTTT-TTCTGAA-AGAGCTGAATGT 1339 | || || | ||| ||| | | | | ||| ||||||| | | | |||||| Sbjct 743 TAGCCATGGCTGTGGCATTAAACCGTGGTTTGTCAGAAAGTTCTGAACA-ACCAGAATGT 801 Query 1340 AGGTTTTTTATGAACACTGGAACTTGTAAATATGGTGATGATTGCAAATACAGTCATCC- 1398 ||||||||||||||||||| || |||||||| || || ||||||||||||| |||||| Sbjct 802 CGGTTTTTTATGAACACTGGGACATGTAAATACGGAGACGATTGCAAATACAATCATCCC 861 Query 1399 GAAAGAAAG-ATTGTTACAATCACCACCAACTCTCT-TGAACCCTATTGTTCTTCCAGCA 1456 | | | ||| ||| | |||| ||||||||| ||| | | |||||| ||||||||||||| Sbjct 862 GGA-GTAAGGATT-TCACAACCACCACCAAGTCT-TATAAACCCTTTTGTTCTTCCAGCG 918 Query 1457 AGACCAGGACAGCCAGCATGTGGTAACTTCAAGGCCT-ACGGATTTTGCAAGTTTGGAGC 1515 ||||| ||||| ||||| ||||||||||||| || || | ||||| |||||||| ||| | Sbjct 919 AGACCTGGACAACCAGCTTGTGGTAACTTCA-GGTCTTATGGATTCTGCAAGTTCGGAAC 977 Query 1516 AAACTGCAAATTTGATCACTCAATGCTGCTAAACCCTTATAACAATACGGGCTTGGCCAT 1575 |||||||||||| || ||| | ||||||| | | || || |||| ||||||| Sbjct 978 AAACTGCAAATTCGACCACCCGATGCTGCCA-----T-AT--CA----GGGCCTGGCCAT 1025 Query 1576 -G-T-CTTCTCTGCCTACTCCTTATCCTTATGCTCCACCTGTTTCAACTAATTTGAGGAT 1632 | | |||||||||||||||||||| ||| | |||||||||||| || |||||| Sbjct 1026 AGCTTCTTCTCTGCCTACTCCTTATGCTT---C---ACCTGTTTCAACCCATCAGAGGAT 1079 Query 1633 CTCATCGCCACCAAGCCCCTCTGATAT-GAC-TACCCTATCCAATGGTAAACCCG-CTGC 1689 |||| | | |||| || ||||||| | || | | || || ||||||||||| | | | Sbjct 1080 CTCACCATCGCCAAACCGCTCTGAT-TCGAAGT-CTCTTTCTAATGGTAAACCTGAC-G- 1135 Query 1690 TGCAGAAGCTCAAAGCTTGGAGACTGAGAAACAAGAC 1726 || ||||| |||||| ||||||||||||| |||| Sbjct 1136 TGAAGAAGG--AAAGCTCAGAGACTGAGAAACCAGAC 1170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75113963140 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5