BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32960.1 Length=1239 Score E Sequences producing significant alignments: (Bits) Value Ahg482238 jgi|Araly1|482238|fgenesh2_kg.4__1298__AT2G32960.1 1317 0.0 > Ahg482238 jgi|Araly1|482238|fgenesh2_kg.4__1298__AT2G32960.1 Length=1056 Score = 1317 bits (713), Expect = 0.0 Identities = 899/982 (92%), Gaps = 39/982 (4%) Strand=Plus/Plus Query 14 TCTAAAAGTCCAACAGCGACAACATAGGTTTCTCTCTCTACCATGGCGTGTCTATATAAA 73 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1 TCTAAAAGTCCAACAGCGACAACATAAGTTTCTCTCTCTACAATGGCGTGTCTATATAAA 60 Query 74 GCAAGGTCGTCGATTCATAACGACCATCTCCATTACTTCTCCATAACCTTTCAAGAAACA 133 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 61 GCAAGGTCGTCGATTCATAACGACCATCTCCATTACTTCTCCATAACCTATCAAGAAACA 120 Query 134 AAAACAAGATAAGATCTCTTCAGATTCCTACACTCCAACAAATATAAGTTTCATTAGATT 193 ||||| |||| | ||| | || || | | | ||| ||||||| Sbjct 121 AAAAC-----AAGA-----TAAGA-T-CT---CT--------TCT--GATTC-TTAGATT 154 Query 194 CTTTCTTAGCT-AGAGAATGAAACTGATTGAGAAGACGATGAGCATGAACCAGTTTAGGA 252 ||||||||||| | |||||||||||||||||||||||||||| |||| | | | | || Sbjct 155 CTTTCTTAGCTCA-AGAATGAAACTGATTGAGAAGACGATGAACATG-A-C--TAT-GG- 207 Query 253 CTATGGAGGAGGAGAAGCAAGACGGTGGTGAGCTTTTCCATACCATCGAGGTAGCTAAAG 312 | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 208 --A-GGAGGAGGAGAAGCAAGACGGTGGTGAGGTTTTCCATACCATCGAGGTTGCTAAAG 264 Query 313 TTGACCGGAACAACGTGTCTCAGCCGCCGCCGGCTGCTACTGCAGCACTGCTAGAAGTTC 372 ||||||||||| ||||||||| |||| || ||||| || ||||| |||||||||||||| Sbjct 265 TTGACCGGAACTACGTGTCTCCGCCGGCGGCGGCTACTGCTGCACCACTGCTAGAAGTTT 324 Query 373 CCGGTGATGAACTTAACCTAATTCCACCGTTGAACTTTTCGATGGTCGATAATGGTATAT 432 |||| || ||||||||||| |||||||||||||||||| |||| || ||||||||||||| Sbjct 325 CCGGCGACGAACTTAACCTGATTCCACCGTTGAACTTTGCGATTGTTGATAATGGTATAT 384 Query 433 TCCGGTCTGGATTCCCGGACTCGGCGAACTTCTCCTTCATCAAGACTCTTGGCCTTCGCT 492 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 385 TCCGGTCTGGATTCCCGGACTTAGCGAACTTCTCCTTCATCAAGACTCTTGGCCTTCGCT 444 Query 493 CAATCATATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCA 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CAATCATATCTTTGTGTCCAGAGCCATATCCTGAGAACAACATGCAGTTCCTCAAATCCA 504 Query 553 ATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCTAAGTCCAAGTGTCTTCCCGGAT 612 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 505 ATGGAATTAGTCTTTTTCAGTTTGGCATTGAAGGCTCCAAGTCCAAGTGTCTCCCCGGGT 564 Query 613 TAGAGAACGAGGTTTGGTTGCATATTTGGAGTTCTAAGCATCAGAAAGAGGATTTTTATA 672 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 565 TAGAGAACGAGGTTTGGTTGCATATTTGGAGTTCTAAGCATCAGAAAGAGGGTTCCTATA 624 Query 673 CAAATGGAAATTCAAAAACTTCGGAGCCATTTGTAGATATCCTAGATCAGAAAATCCGTG 732 ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 625 CAAATGGAAATTCGAAAACTTCGGAGCCATTAGTAGATATCCTAGATCATAAAATCCGTG 684 Query 733 AAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCATTGCAAACGAG 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 AAGCACTCAAAGTCCTTCTCGATGAGAAGAACCATCCACTTTTGATTCATTGCAAACGAG 744 Query 793 GCAAGCACAGAACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGAAATGGTGCATAA 852 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 GCAAGCACAGGACCGGGTGTCTTGTTGGGTGCATGAGGAAACTCCAGAAATGGTGCATAA 804 Query 853 CATCGATACTCGATGAGTAT-AAGCGATTTGCAGCGGCTAAAGCTAGAGTTTCGGATCAA 911 |||||||| |||| ||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 805 CATCGATATTCGACGAGTACCAA-CGATTTGCAGCGGCTAAAGCTAGAGTTTCGGACCAA 863 Query 912 AGGTTCTTGGAGTCATTCGATGTATCAGGCTTGAAGCACACTCCAATGTCTTTTTCTTGC 971 |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 864 AGGTTCATGGAGTCATTCGATGTATCAGGCTTGAAGCACATTCCAATGTCTTTCTCTTGC 923 Query 972 TCCAATAGGTAAAATAAAAACG 993 ||||||||||||||| |||||| Sbjct 924 TCCAATAGGTAAAATGAAAACG 945 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46281221238 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5