BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G32970.2 Length=2575 Score E Sequences producing significant alignments: (Bits) Value Ahg482239 jgi|Araly1|482239|fgenesh2_kg.4__1299__AT2G32970.1 3576 0.0 > Ahg482239 jgi|Araly1|482239|fgenesh2_kg.4__1299__AT2G32970.1 Length=2376 Score = 3576 bits (1936), Expect = 0.0 Identities = 2222/2357 (94%), Gaps = 32/2357 (1%) Strand=Plus/Plus Query 13 TGAAGATTAAAAACCGACGAGACCCTGGCGCCATCACAACTACGCAATCT-CATTCCTCC 71 |||||||||||||||||||||||||||||||||| ||| | |||||| |||| |||| Sbjct 1 TGAAGATTAAAAACCGACGAGACCCTGGCGCCAT---AAC-A-ACAATCTCCATT-CTCC 54 Query 72 GTCTTCTTCGGCTTTCAAATTTACCATTTTACCCTTCTCTTTCCCTGAGACGTCTTCTTT 131 |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 55 GTCTTCCTCGGCTTCCAAATTTACCATTTTACCCTTCTCTTTCCCTGAGACTTCTTTTTT 114 Query 132 GGAAATATTC-T-TC-TCTTCTTCCATTCCAATGATTTTGAGGTTAATTGGAAATTAGAG 188 |||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 115 GGAAATATTCTTCTCTTCTTCTTCCATTCCAATGATTTTGAGTTTAATTGGAAATTAGAG 174 Query 189 TGCAAAATTGGGATTTAGATGGGGATTGCTGATGAATCTAAATGTGTTTTCCCCTTGACG 248 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 175 TGCAATATTGGGATTTAGATGGGGATTGGTGATGAATCTAAATGTGTTTTCCCCTTAACG 234 Query 249 AGTCTCCAGATCGGAGACTTGCAATCATATCTTTCTGATCTCAGTATTTTCCTGGGAAAT 308 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 235 AGTCTCCAGATCGGAGACTTGCAATCGTATCTTTCTGATCTCAGTATTTTCCTGGGAAAT 294 Query 309 AAAAGTAAAAAGATTTACATATTGGTGGATAACCGGCCATGGTTGAATCCTGGCACCAGA 368 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | Sbjct 295 AAAAGTAAAAAGATTTACATATTGGTGGACAACCGGCCATGGTTGAATCCTGGAACCAAA 354 Query 369 TCTGCTCATTTTTGGCAACTAATGGTCACAAAGTCCAGACTCTCCCCTTTTGCAAACACG 428 ||||||||||| |||||||||||||| || || |||||||| ||||| ||||||||| Sbjct 355 TCTGCTCATTTCTGGCAACTAATGGTTAC-AA----AGACTCTCTCCTTTCGCAAACACG 409 Query 429 AAACTTCGAGGggagaagaaaaatcagaatcaggacagggagaagaaaaagtcgaagcag 488 ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct 410 AAAGTTCGAGGGGAGAAGAAAAATCAGAAGCAGGAGGGGGAGAAGAAAAAGTCGAAGCCG 469 Query 489 gaggaggaag-agaagCCTAAAGAGGCTTGTTCTCAGCCCCAGCCGGACGATaaaaaaaT 547 |||||| || | |||||||||||||| ||||||||||||||||| ||| ||| |||||| Sbjct 470 AAGGAGG-AGAAAAAGCCTAAAGAGGCGTGTTCTCAGCCCCAGCCAGACAATATAAAAAT 528 Query 548 GAAGAAGCTTAAGCAGTGGTTCTCATTGATAGATGCGACAACTTTTTCGAATAAGAAATT 607 ||| ||||||||| | ||||||||| |||||||||||||||| ||||| || |||||||| Sbjct 529 GAAAAAGCTTAAGAAATGGTTCTCAGTGATAGATGCGACAACATTTTCTAAGAAGAAATT 588 Query 608 ACCTGCAAAGAAACTGCAGAGCTCTTTGTATCTGAAA-AAGCAACTGCACAAGACCTTGT 666 |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| Sbjct 589 ACCTGCAAAGAAACTGCAAAGCTCTTTGTATCT-AAACAAGCAACTGCACAAGACCTTGT 647 Query 667 ATGGTTTCATCGTGTTTGAGATTGAATGGGCTAATGTGAGGGGTATCAACTACTTAAATG 726 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 648 ATGGTTTCATCGTGTTTGAAATTGAATGGGTTAATGTGAGGGGTATCAACTACTTAAATG 707 Query 727 AGCTACAGACAGACACATCTCTTGCTATAGAAGCTAAGTTGATGCGAAGGTGGGAGTTTG 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 AGCTACAGACAGACACATCTCTTGCTATAGAAGCTAAGTTGATGCGAAGGTGGGAGTTTG 767 Query 787 AGAGTATCGATCAAGCTGTGAAA-AGCATGTCTCAGTGGTTCTCTGGATCAAAAGCTGAA 845 ||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||||||| Sbjct 768 AGAGTATTGATCAAGCTGT-AAATAGCATGTCTCAGTGGTTCTCTGGATCAGAAGCTGAA 826 Query 846 AAGTCTTGCTTGAGGGAATATCTCGACTCAACTATAGGAGAGGTTTTTCATGACACTGAA 905 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 827 AAGTCTTACTTGAGGGAATATCTCGACTCAACTATAGGAGAGGTTTTTCATGACGCTGAA 886 Query 906 ATGGAATTCTCAAAAACTACTCTCTCTGATGACGATGACAATCTTTCTGTTGAAAATGAT 965 |||||||||||||||||| ||| || |||||| |||||||||| ||||||||||||||| Sbjct 887 ATGGAATTCTCAAAAACTCCTCCCTTTGATGATGATGACAATCGTTCTGTTGAAAATGAC 946 Query 966 TCTCCTTGCTGCTCCAGAAGTGTCTTCAACGTTAATCATTCTGCTGCAAATTATGATGAA 1025 |||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||| Sbjct 947 TCTCCTTGCTGCGCCAGAAGTGTCTTCAACGTTAATCATGCTGCTGTAGATTATGATGAA 1006 Query 1026 AACGAGCCTCACACACCGCCTCTGACTGGACCGTACAAGAGAAGAAGAGTAACTAAGGCA 1085 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1007 AACGAGCCTCACACACCGCCTCTGACTGGACCATACAAGAGAAGAAGAGTAACTAAGGCA 1066 Query 1086 ATCAGCACCGGAGTTGAAGTTGACTATATGGAGGAAACACCCAGAAGAAAAGATAACTCG 1145 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1067 ATCAGCACTGGAGTTGAAGTTGACTATATGGAGGAAACACCCAAAAGAAAAGATAACTCG 1126 Query 1146 GTAGACCACTGGGAAAGCCATGTACCTGATTGTGACAACATCATTGAAGCAACCCAGTAT 1205 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1127 GTAGACCACTGGGAAAGCCATGTACCTGATTGTGAGAACATCACTGAAGCAACCCAGTAT 1186 Query 1206 AAGGATGTACTAGTTCTTGTTAGGTGTGGTGACCGTGATCTCCCTTTCAAGTTGCGAGAG 1265 |||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||| Sbjct 1187 AAGGATGTACTAGTTCTTGTTAAGTGTGGTGACCGTGATCTTCCTTTTAAATTGCGAGAG 1246 Query 1266 GTTATAATGGCTGACATACGATTGCTTACTTTACTTGAAGCTGGTCTCCCTTCATGGGTC 1325 |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 1247 GTTATAATGGCTGACATACGCTTGCTTACTTTACTTGAAGCTGGTCTCCCGTCCTGGGTC 1306 Query 1326 TTGTTTCTGCAGTCTTATCCCGGTTTCTGTCATCTTTATCGACCCTGGATGTGCCATTTC 1385 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1307 TTGTTTCTGCAGTCTTATCCCGGTTTCTGTCATCTTTATCGACCCTGGATGTGCCTTTTC 1366 Query 1386 GCCAGAGCATTATATGTGATGATATCTGTCATCACTGTTGTGATTGGTTTTTATGACCTG 1445 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1367 GCCAGAGCATTATATGTGATGGTATCTGTCATCACTGTTGTGATTGGTTTTTATGACCTG 1426 Query 1446 TACAAAAATGTCCCTGTTCTGAAGGCTACTGCATCTCGGTTATGTGGGCCACTGTTCGAT 1505 |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||| Sbjct 1427 TACAAAAATGTCCCCGTTCTGAAGGCTACTGCAGCTCGGTTATGTGGGCCACTCTTTGAT 1486 Query 1506 TGGGTTGAAACATGGGACATGGTATCCCGAATAAAGTACTTGGGAACGATGTTGTTTCTT 1565 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1487 TGGGTTGAAACATGGGACATGGTATCACGGATAAAGTACTTGGGAACGATGTTGTTTCTT 1546 Query 1566 CACAACTTCCAGAAAGCTGTCAAGTGGGCTCTGACTATGGCACGTGCTATGCAGTCATTT 1625 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1547 CACAACTTCCAGAAAGCTGTCAAATGGGCTCTGACTATGGCACGTGCTATGCAGTCATTT 1606 Query 1626 GTTTCTTTTTGCATAATGCCTCTGGTAAATCCTCTCTTAGACA-TTCTTGAATTGCTCCT 1684 ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| Sbjct 1607 GTTTCTTTTTGCATAATGCCTCTGGTAAATCCTCTCTTAGA-AGTTCTTGGTTTGCTCCT 1665 Query 1685 ACCGTTATGGAATTCGTTGGCGGAAACAGTGGCAAGCTTGGTTTCAGTGGTTTGGATAGT 1744 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1666 ACCGTTATGGAATTCGTTGGCGGAAACAGTGGCGAGCTTGGTTTCAGTGGTTTGGATAGT 1725 Query 1745 GATGGAGTCTGGTTGCAATCTTGTTGGTGATGTGGTAGAGTTGGTGCTTTTGCCCATCTC 1804 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1726 GATTGAGTCTGGTTGCAATCTCGTTGGTGATGTGGTAGAGTTGGTGCTTTTGCCCATCTC 1785 Query 1805 GCTAGTTTGGAACGTCACAAATACTGTTTTACTACCTCTATTCTGGATCATATGGGAAGT 1864 |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1786 ACTAGTTTGGAACCTCACAAATACTGTTTTACTGCCTCTTTTCTGGATCATATGGGAAGT 1845 Query 1865 GGTATATGCACCGATCAGAGTGGTTGCTGCATTGGCCAATTGTTTAGCTGTTTCCTTCTC 1924 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1846 GGTATATGCGCCGATCAGAGTGGTTGCTGCATTGGCCAACTGTTTAGCTGTTTCCTTCTC 1905 Query 1925 ATACATATTCGATGTTATTGGAGATTTATGGAGGTATATGAGCAGTATACTTCAGCTTGC 1984 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1906 ATACATATTCGATCTTATTGGAGATTTATGGAGGTATATGAGCAGTATACTTCAGCTTGC 1965 Query 1985 ATCAGATTCTCAAGCAGCTGTGAAGACTTATGAAGTCTCCATGTGGCGTACACTTTGGAA 2044 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1966 ATCAGATTCTCAAGCAGCTGTGAAGACTTATGAAGTCTCCATGTGGCGTACTCTTTGGAA 2025 Query 2045 CGATCTCTTTTCTCATGTTTTTCGTGCTGTCAGGAGCATATTGAACGGTTTTGTAGCATT 2104 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || Sbjct 2026 CGACCTCTTTTCTCATGTTTTTCGTGCTGTCAGGAGTATATTGAACGGTTTTGTGGCCTT 2085 Query 2105 TTTTGCTGCCTGTAACAGACATCGGCTTAGTACATATAATCACATACAAGAGTTTATGGA 2164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2086 CTTTGCTGCCTGTAACAGACATCGGCTTAGTACATATAATCACATACAAGAGTTTATCCA 2145 Query 2165 GAGAGTACATGGACGAACCACGAGACCAGAATCTATAGACTCAAGACATGGCAAGTCTGT 2224 ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| Sbjct 2146 GAGAGTACATGGACGAACCACGAGATCAGAATCTATAGACTCAAGAGATGGCATGTCTGC 2205 Query 2225 TAAGAACAATCAACGTACAGGAGACGAAACGAGAAGGAAATTGCACCTTGCATAGAAGTC 2284 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2206 TAAAAACAATCAACGTACAGGAGACGAAACGAGAAGGAAATTGCACCTTGCATAGAAGTC 2265 Query 2285 AA-A--A----CTTAAATTCTTTTGATTACTTTTTCTTGCCAGAGAATATGATAGGTTAG 2337 || | | ||||| ||||||||||| |||| ||| |||||| |||||||||||||| Sbjct 2266 AACACGAAAATCTTAA-TTCTTTTGATTTGTTTT-CTTACCAGAGTATATGATAGGTTAG 2323 Query 2338 TGTATAGATAGATAGGT 2354 |||||||||||||||| Sbjct 2324 GGTATAGATAGATAGGT 2340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97092034505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5