BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33150.1 Length=1882 Score E Sequences producing significant alignments: (Bits) Value Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 2889 0.0 Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1 1245 0.0 Ahg331293 jgi|Araly1|331293|fgenesh1_pm.C_scaffold_8000636 403 2e-111 > Ahg482251 jgi|Araly1|482251|fgenesh2_kg.4__1311__AT2G33150.1 Length=1769 Score = 2889 bits (1564), Expect = 0.0 Identities = 1707/1775 (96%), Gaps = 14/1775 (1%) Strand=Plus/Plus Query 3 TTTGGGATTATCATTTACCCGGAACGGGCAAAGCGGTGAGTCATCTTACCTTATAAATGA 62 |||||||| || |||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 1 TTTGGGATAATTATTTTCCAAGAACGGGCAAAGCGGTGAGTCATCTTTCCTTATAAATGA 60 Query 63 TCACAAACCCGAGGACTGTGAGTTTTCGTGTAGAACAAATCCTTCTCTGAGAAAAAACAA 122 |||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||| Sbjct 61 TCACAACCCCGAGGACTCTGAG-TTTCGTGTAGAACAAATCCTTCTCTGAG--AAAACAA 117 Query 123 CAGATCCGAATTTTATCTTTAATCAGCCGGAAAAAATGGAGAAAGCGATCGAGAGACAAC 182 |||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 118 CAGATCGGGATTTTATC-TTAATCAACCGGAAAAAATGGAGAAAGCGATCGAGAGACAAC 176 Query 183 GCGTTCTTCTTGAGCATCTCCGACCTTCTTCTTCTTCTTCGCACAATTACGAGGCTTCTC 242 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 177 GCGTTCTTCTTGAACATCTCCGACCTTCTTCTTCTTCTTCGCACAATTTCGAGGCTTCTC 236 Query 243 TATCTGCTTCTGCTTGCTTGGCTGGGGACAGTGCTGCATATCAGAGGACCTCTCTCTATG 302 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 237 TATCCGCTTCTGCTTGCTTGGCTGGGGACAGTGCTGCTTATCAGAGGACCTCTCTATATG 296 Query 303 GAGATGATGTTGTCATTGTCGCGGCACATAGGACTCCACTATGCAAGTCCAAACGTGGCA 362 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 297 GAGATGATGTTGTGATTGTCGCGGCACATAGGACTCCACTATGCAAGTCTAAACGTGGCA 356 Query 363 ATTTCAAGGATACATATCCCGATGATTTGCTCGCACCTGTTTTGAGGGCATTGATAGAGA 422 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 357 ACTTCAAGGATACATATCCTGATGATTTGCTCGCACCTGTTTTGAGGGCATTGATAGAGA 416 Query 423 AGACGAATCTAAACCCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGGCACCTG 482 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 417 AGACAAATCTAAACCCAAGTGAAGTAGGGGACATTGTTGTGGGTACTGTTTTGGCACCTG 476 Query 483 GATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTGAAACCG 542 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 477 GATCTCAGAGAGCCAGTGAATGCAGGATGTCTGCGTTCTATGCTGGTTTCCCTGAAACCG 536 Query 543 TGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAG 602 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 537 TGGCTGTCAGAACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGACGTAG 596 Query 603 CCGCTGCCATTAAAGCGGGATTTTATGACATTGGTATCGGGGCTGGTTTGGAGTCCATGA 662 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 597 CCGCTGCCATTAAAGCTGGATTTTATGACATTGGTATCGGGGCTGGGTTGGAGTCCATGA 656 Query 663 CTACCAATCCAATGGCATGGGAAGGGTCAGTCAACCCAGCGGTGAAGAAGTTTGCACAAG 722 |||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 657 CTACCAATCCAATGGCGTGGGAAGGGTCAGTCAACCCAGCGGTGAAGCAGTTTGTACAAG 716 Query 723 CGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTTGGTG 782 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 717 CACAGAATTGTCTTCTTCCTATGGGTGTTACTTCAGAAAATGTAGCACAACGCTTTGGTG 776 Query 783 TCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGCTGCTGCTA 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 TCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGCTGCTGCTA 836 Query 843 CTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGTTGACCCGA 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 837 CTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGTTGACCCAA 896 Query 903 AGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACCAACCACAA 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 AGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACCAACCACAA 956 Query 963 CTCTTGCTTCTCTTGGGAAGCTGAAGCCAGTGTTTAAGAAGGATGGCACCACTACTGCTG 1022 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 957 CTCTTGCTTCTCTTGGGAAGCTGAAGCCAGTGTTTAAGAAGGATGGCACCACAACTGCTG 1016 Query 1023 GAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAAGAGAAGTGTTG 1082 ||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1017 GAAATTCGAGCCAAGTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAAGAGAAGTGTTG 1076 Query 1083 CAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTTG 1142 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1077 CAATGCAAAAAGGACTTCCTGTTCTTGGTGTATTCAGGACATTTGCTGCAGTTGGTGTTG 1136 Query 1143 ACCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTCCTGCTGCAGTTAAGGCGGCTG 1202 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1137 ACCCTGCAATCATGGGTATTGGTCCAGCAGTTGCCATTCCTGCTGCAGTTAAGGCAGCTG 1196 Query 1203 GTTTAGAACTTGATGACATCGACTTGTTTGAGATCAATGAGGCATTTGCATCTCAGTTTG 1262 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GTTTAGAACTTGATGACATTGACTTGTTTGAGATCAATGAGGCATTTGCATCTCAGTTTG 1256 Query 1263 TTTATTGCCGTAACAAATTGGGACTTGACCCAGAGAAAATCAATGTCAACGGAGGTGCAA 1322 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1257 TTTATTGCCGTAACAAATTGGGACTTGACCCAGAGAAAATCAATGTCAACGGAGGCGCAA 1316 Query 1323 TGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGCGTTGTGTTGCTACATTGTTGCACG 1382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGCGTTGTGTTGCTACATTGTTGCACG 1376 Query 1383 AGATGAAACGCCGTGGTAAAGACTGCCGTTTTGGAGTAGTGTCAATGTGCATTGGGACGG 1442 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 AGATGAAACGCCGTGGAAAAGACTGCCGTTTTGGAGTAGTGTCAATGTGCATTGGGACGG 1436 Query 1443 GGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATGAGCTTCGCAACGCAA 1502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1437 GGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATGAGCTTCGCAACGCAA 1496 Query 1503 GGAAAGTTGAAGCGCAAGGTCTTTTGTCCAAGGACGCTCGCTAGAGAGGACCATGCACCA 1562 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 1497 GGAAAGTTGAAGCGCAAGGTCTTTTGTCCAAGGACGCTCGCTAGATATCACCATGCACCA 1556 Query 1563 AAACCGTTTTTCACCTCACCTCTC---TCT-T-TTCTGGTCTTCTTGTCACTTTCTTCAG 1617 ||||| || ||||||||||||||| ||| | |||||||| |||| || |||||||||| Sbjct 1557 AAACCCTTCTTCACCTCACCTCTCACCTCTCTCTTCTGGTCCTCTTTTCCCTTTCTTCAG 1616 Query 1618 ATATTATTATAGTTTCGAATAAAGCACACAACCAATGTTTGCCTGAGTCTTGTGTTGTTC 1677 ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1617 ATATTATTATAGTTTTGAATAAAGCACACAACCAATGTTTGCCTGAGTCGTGTGTTCTTC 1676 Query 1678 TTGACCAGGTCATGTGTTTAGTAttttttttAAGTGAAGGGGGATAATCTTTAAATCTTT 1737 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1677 TTGACCAGGTCATGTGTTTAGTATTTTTT--ACGTGAAGGGGGATAATCTTTAAATCTTT 1734 Query 1738 TAT-AT--GTAAGAATATTGTTCTTCTCGAATTTC 1769 ||| || ||||||||||||||||||||||||||| Sbjct 1735 TATTATATGTAAGAATATTGTTCTTCTCGAATTTC 1769 > Ahg470458 jgi|Araly1|470458|fgenesh2_kg.1__412__AT1G04710.1 Length=1394 Score = 1245 bits (674), Expect = 0.0 Identities = 1031/1204 (86%), Gaps = 22/1204 (2%) Strand=Plus/Plus Query 299 TATGGAGATGATGTTGTCATTGTCGCGGCACATAGGACTCCACTATGCAAGTCCAAACGT 358 |||||||||||||||||||||||||||||||| |||||| |||| |||||| | |||||| Sbjct 40 TATGGAGATGATGTTGTCATTGTCGCGGCACAAAGGACTGCACTTTGCAAGGCAAAACGT 99 Query 359 GGCAATTTCAAGGATACATATCCC-GATGATTTGCTCGCACCTGTTTTGAG-GGCATTGA 416 |||| ||||||||||| || ||| ||||| ||||| ||| |||| ||||| || ||||| Sbjct 100 GGCAGCTTCAAGGATACTTA-CCCAGATGAGTTGCTTGCATCTGTATTGAGAGG-ATTGA 157 Query 417 TAGAGAAGACGAATCTAAACCCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGG 476 ||||||| || ||| | |||||||||||||| ||||||||||| |||||||||||||||| Sbjct 158 TAGAGAAAACAAATGTTAACCCAAGTGAAGTTGGTGACATTGTAGTGGGTACTGTTTTGG 217 Query 477 CACCTGGATCTCAGAGAGCCAGTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG 536 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 218 GACCAGGATCTCAGAGAGCCACTGAATGCAGGATGGCTGCGTTCTATGCTGGTTTCCCTG 277 Query 537 AAACCGTGGCTGTCAGAA-CTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCT 595 |||| || | |||||| | ||||| |||||||| |||||||||||||| ||||||||| Sbjct 278 AAACTGTTCCAATCAGAATC-GTGAACAGACAGTGTTCATCTGGGCTTCAAGCTGTTGCT 336 Query 596 GATGTAGCCGCTGCCATTAA-AGCGGGATTTTATGACATTGGTATCGGGGCTGGTTTGGA 654 || || ||||||||||| || ||| || ||||||||||||||||| || ||||| |||| Sbjct 337 GACGTCGCCGCTGCCAT-AAGAGCAGGTTTTTATGACATTGGTATTGGAGCTGGGCTGGA 395 Query 655 GTCCATGACTACCAATCCAATGGCATGGGAAGGGTCAGTCAACCCAGCGGTGAAGAAGTT 714 ||||||||| || ||||||| || |||| |||| |||||||||||| ||||||||||| Sbjct 396 GTCCATGACAACTAATCCAAGGGGATGGAAAGGATCAGTCAACCCAAATGTGAAGAAGTT 455 Query 715 TGCACAAGCGCAGAATTGTCTTCTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACG 774 || |||||| || | ||| |||||||| |||||| |||| ||||| ||||||||||| || Sbjct 456 TGAACAAGCACATAGTTGCCTTCTTCCAATGGGTATTACTTCAGAGAATGTAGCACACCG 515 Query 775 CTTTGGTGTCTCAAGGCAGGAGCAAGATCAAGCTGCTGTTGACTCGCACAGAAAGGCAGC 834 ||| ||| |||||| ||||||| ||||||||||||||||| || ||||||||||| || Sbjct 516 GTTTAATGTTTCAAGGGAGGAGCAGGATCAAGCTGCTGTTGATTCTCACAGAAAGGCTGC 575 Query 835 TGCTGCTACTGCTGCTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTGT 894 | ||||||||||| | |||||||| |||||||| || || || || || |||||| |||| Sbjct 576 TTCTGCTACTGCTTCCGGTAAATTTAAGGATGAAATAATCCCAGTAAAAACCAAGATTGT 635 Query 895 TGACCCGAAGACTGGTGATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCGACC 954 |||||| || || |||||||||||| |||| || |||||||| |||||||| || ||||| Sbjct 636 TGACCCAAAAACAGGTGATGAGAAATCCATAACCGTTTCTGTGGATGATGGGATACGACC 695 Query 955 -AACCACAACTCTTGCTTCTCTTGGGAAGCTGAAG-CCAGTGTTTAAG-AAGGATGGCAC 1011 ||| ||||| ||| | |||| ||||| ||| |||||||||||| ||| | || || Sbjct 696 TAAC-ACAACCCTTTCCGGACTTGCAAAGCT-AAGACCAGTGTTTAAGGAAG-ACGGTAC 752 Query 1012 CACTACTGCTGGAAATTCCAGCCAAGTAAGTGATGGTGCAGGAGCGGTTCTCCTAATGAA 1071 ||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| Sbjct 753 CACAACTGCTGGAAATTCTAGCCAATTAAGTGATGGTGCAGGAGCTGTTCTCCTCATGAG 812 Query 1072 GAGAAGTGTTGCAATGCAAAAAGGACTTCCCGTTCTTGGTGTATTCAGGACATTTGCTGC 1131 ||||| ||| |||||||| ||||| |||||| |||||||||||||||||||||||||||| Sbjct 813 GAGAAATGTCGCAATGCAGAAAGGCCTTCCCATTCTTGGTGTATTCAGGACATTTGCTGC 872 Query 1132 AGTTGGTGTTGACCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTCCTGCTGCAGT 1191 ||||||||| ||||| || |||||||| | || ||||| |||||||||||||||||||| Sbjct 873 AGTTGGTGTGGACCCAGCCATCATGGGGGTTGGACCAGCTGTTGCCATTCCTGCTGCAGT 932 Query 1192 TAAGGCGGCTGGTTTAGAACTTGATGACATCGACTTGTTTGAGATCAATGAGGCATTTGC 1251 |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| Sbjct 933 CAAGGCGGCTGGTTTAGAACTCAATGACATCGACTTGTTTGAGATCAACGAGGCGTTTGC 992 Query 1252 ATCTCAGTTTGTTTATTGCCGTAACAAATTGGG-ACTTGACCCAGAGAAAA--TCAATGT 1308 |||||||||||||||||| || ||||| ||||| | ||||||| | ||||| ||||||| Sbjct 993 ATCTCAGTTTGTTTATTGTCGGAACAAGTTGGGGA-TTGACCC-G-GAAAAGGTCAATGT 1049 Query 1309 CAACGGAGGTGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGAGCGC-GTTGTGTTG 1367 ||| ||||| || || ||||| || ||||| ||||| |||||||| || | | || |||| Sbjct 1050 CAATGGAGGGGCCATAGCCATCGGACATCCCTTGGGTGCTACAGGCGC-CAGATGCGTTG 1108 Query 1368 CTACATTGTTGCACGAGATGAAACGCCGTGGTAAAGACTGCCGTTTTGGAGTAGTGTCAA 1427 | || || |||| ||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 1109 CGACGCTGCTGCATGAGATGAAACGCCTTGGTAAAGACTGTCGTTTTGGCGTAGTGTCAA 1168 Query 1428 TGTGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAGAGGAGATGGAGTTGATG 1487 ||||||| || |||| ||||| ||||| ||||||||||||||||||| || || |||| Sbjct 1169 TGTGCATAGGTTCGGGAATGGGAGCAGCCGCTGTGTTTGAGAGAGGAGGCGGTGTGGATG 1228 Query 1488 AGCT 1491 |||| Sbjct 1229 AGCT 1232 > Ahg331293 jgi|Araly1|331293|fgenesh1_pm.C_scaffold_8000636 Length=1374 Score = 403 bits (218), Expect = 2e-111 Identities = 803/1076 (75%), Gaps = 78/1076 (7%) Strand=Plus/Plus Query 437 CCAAGTGAAGTAGGTGACATTGTTGTGGGTACTGTTTTGGCACCTGGATCTCAGAGAGCC 496 ||||||||||| || || || ||||| ||||| || | || || || |||||||||| | Sbjct 277 CCAAGTGAAGTTGGGGATATCGTTGTTGGTACCGTGATAGCGCCCGGTTCTCAGAGAG-C 335 Query 497 AGT-GAATGCAGGA-TGGCTGCGTT-CTATGCTGGTTTCCCTGAAACCGTGGCTGTCAGA 553 | | || || | || | || || || | ||||||||| ||||| |||||| | || ||| Sbjct 336 AATGGAGTGTA-GAGTAGCAGC-TTATTTTGCTGGTTTTCCTGACACCGTGCCAGTTAGA 393 Query 554 ACTGTGAATAGACAGTGCTCATCTGGGCTTCAGGCTGTTGCTGATGTAGCCGCTGCCATT 613 ||||| |||||||| |||||||| || || || || ||||||||||| || ||| ||||| Sbjct 394 ACTGTCAATAGACAATGCTCATCAGGACTACAAGCAGTTGCTGATGTTGCTGCTTCCATT 453 Query 614 AAAGCGGGATT-TTATGACATTGGTATCGGGGCTGGTTTGGAGTCCATGACTACCAATCC 672 | ||| || || ||| ||||||||||| || ||||| |||| || ||| | || || | Sbjct 454 AGAGCTGG-TTATTACGACATTGGTATTGGTGCTGGAGTGGAATCAATGTCAACTGAT-C 511 Query 673 A-ATGGCATGGGAAG-GG---TCA-G--TC-AA-CCCAGCGGTGAAGAAGTTTGCAC--A 720 | || | | ||| | || ||| | || || || || | ||| | ||| | | | Sbjct 512 ATAT-TCCT-GGAGGCGGCTTTCATGCCTCTAATCCAAGAGCACAAG-A-TTT-CCCGAA 566 Query 721 AGCGCAG-AATTGTCTT-CTTCCTATGGGTGTTACGTCAGAAAATGTAGCACAACGCTTT 778 ||| | | ||||| || ||||| ||||| |||| || ||||| || ||| || | || Sbjct 567 AGC-CCGTGATTGT-TTGCTTCCAATGGGAATTACTTCTGAAAACGTTGCAGAAAGATTC 624 Query 779 GGTGTCTCAAG-GCAGGAGCAAGATCA-AGCTGCTGTTGACTCGCACAGAAAG-GCAGCT 835 |||||| |||| | | ||||||||| | ||||| || || || |||| || | || || Sbjct 625 GGTGTCACAAGAG-AAGAGCAAGAT-ATGGCTGCGGTGGAGTCTCACA-AACGCGCTGCA 681 Query 836 GCTGCTACT-GCTG-CTGGTAAATTCAAGGATGAGATCATTCCTGTTAAGACCAAGCTTG 893 ||||||| | || | |||||||| |||||||||| || ||||||||| || ||| | | Sbjct 682 GCTGCTA-TCGC-GTCTGGTAAACTCAAGGATGAAATAATTCCTGTTGCTACTAAGATCG 739 Query 894 TTGA-CCCGAAGACTGGTG-ATGAGAAACCCATTACAGTTTCTGTTGATGATGGTATCCG 951 | || |||| ||||| | | ||||| | || || ||||||||||| ||| | || Sbjct 740 TGGACCCCG-AGACTAAAGCA-GAGAAGGCAATCGTTGTATCTGTTGATGACGGTGTACG 797 Query 952 ACC-AAC-CACAACTCTTGCTTCTCTTGG-GAAGCTGAAG-CCAGTGTTTAAGA-AGGAT 1006 || ||| || |||| | || || ||| ||||||||| || || ||||| | || | Sbjct 798 TCCAAACTCA-AACT-TGGCAGATC-TGGCAAAGCTGAAGACC-GTCTTTAA-ACAGAAC 852 Query 1007 GGCACCACTACTGCTGGAAATTCCAGCCAAG-TAAGTGATGGTGCAGGAGCGGTTCTCCT 1065 || |||| || ||||| ||| | |||| || | ||||||||||| ||||| || || || Sbjct 853 GGTTCCACCACAGCTGGTAATGCTAGCC-AGATCAGTGATGGTGCTGGAGCTGTACTGCT 911 Query 1066 AATGAAGAGAAGTGTT-GCAATGCAA-AAAGGACTTCCCGTTCTTGGTGTATTCAGGACA 1123 ||||||||||||| || |||||| || || ||||||||| ||||||| |||||||||| Sbjct 912 AATGAAGAGAAGT-TTGGCAATG-AAGAAGGGACTTCCCATTCTTGGAGTATTCAGGAGT 969 Query 1124 TTTGCTG-CAGTTGGTGTTGA-CCCTGCAATCATGGGTATCGGTCCAGCAGTTGCCATTC 1181 ||||||| | |||||| || || | | | |||||||||||||| || |||||||||| Sbjct 970 TTTGCTGTTA-CTGGTGTGGATCCAT-CTGTAATGGGTATCGGTCCGGCTGTTGCCATTC 1027 Query 1182 CTGCTGCAGTTAAGGC-GGCTGGTTTAGAACTTGA-TGACATCGACT-TGTTTGAGATCA 1238 | |||||| ||| | || || | ||| | | || || || | | || ||||||| Sbjct 1028 CCGCTGCAACTAA-ACTTGCAGGCCT-CAACGTCAGCGATATTGA-TCTATTCGAGATCA 1084 Query 1239 ATGAGGCATTTGCATCTCAGTTTGTTTATTGCCGTAACAAAT-TGG-GACTTGACCCAGA 1296 ||||||||||||||||||||| ||| || || | || ||| | | | || || | Sbjct 1085 ATGAGGCATTTGCATCTCAGTATGTGTACTGTTGCAA-AAAGCTAGAG-CTAGATAT-G- 1140 Query 1297 GAAAA--TCAATGTCAACGGAGGTGCAATGGCCATAGGCCATCCTTTGGGCGCTACAGGA 1354 ||||| ||||||| || ||||| || || || || ||||||||| |||| ||||||||| Sbjct 1141 GAAAAGGTCAATGTTAATGGAGGAGCCATTGCTATTGGCCATCCTCTGGGTGCTACAGGA 1200 Query 1355 GCGCGTTGTGTTGCTACATTGTTGCACGAGATGAAACGCCGTGGTAAAGACTGCCGTTTT 1414 || || |||||||| ||||||||||| |||||||| || | || ||||| ||||| ||| Sbjct 1201 GCTCGATGTGTTGCGACATTGTTGCATGAGATGAAGCGGAGAGGAAAAGATTGCCGCTTT 1260 Query 1415 GGAGTAGTGTCAATGTGCATTGGGACGGGGATGGGTGCAGCAGCTGTGTTTGAGAG 1470 |||||| | ||||||||||| || || || ||||| || |||||||| |||||||| Sbjct 1261 GGAGTAATCTCAATGTGCATAGGCACTGGAATGGGAGCTGCAGCTGTTTTTGAGAG 1316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70695494720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5