BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33220.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482258 jgi|Araly1|482258|fgenesh2_kg.4__1318__AT2G33220.1 1103 0.0
Ahg470446 jgi|Araly1|470446|fgenesh2_kg.1__400__AT1G04630.1 547 4e-155
> Ahg482258 jgi|Araly1|482258|fgenesh2_kg.4__1318__AT2G33220.1
Length=739
Score = 1103 bits (597), Expect = 0.0
Identities = 634/652 (97%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 37 TCATTTCTGATTGTCTTTCTCAGAATCCCTAGAACACACACTGATTAACGAATCAAAGAT 96
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 21 TCATTTCTGATTGTCTTCCTCAGAATCCCTAGAACACACACTGATTAACGAACCAAAGAT 80
Query 97 CGATTTGGGGATCAATCGAGGAAGAAGATGACGGAGGCGATGATAAGGAAGAAGCCAGGA 156
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 81 CGATTTGGGGATCAATCGAGGAAGAAAATGACGGAGGCGATGATAAGGAAGAAGCCAGGA 140
Query 157 ATGGCGAGTGTGAAGGATATGCCGTTGCTTCAGGATGGTCCACCACCTGGTGGATTCGCG 216
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 ATGGCGAGTGTGAAGGATATGCCGTTGCTTCAGGATGGTCCACCACCGGGTGGATTCGCG 200
Query 217 CCGGTCCGATATGCTCGCCGGATCTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTT 276
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 201 CCGGTCCGATATGCTCGTCGGATCTCCAACACGGGTCCAAGCGCCATGGCTATTTTCCTT 260
Query 277 ACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGC 336
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 261 ACCGTTTCCGGTGCTTTTGCTTGGGGCATGTACCAAGTCGGTCAGGGCAACAAAATCCGC 320
Query 337 AGGGCGTTGAAGGAAGAGAAGTACGCTGCACGTAGAGCAATTCTACCGATTCTTCAAGCT 396
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 321 AGGGCGTTGAAGGAAGAGAAATACGCTGCCCGTAGAGCAATTCTACCGATTCTTCAAGCT 380
Query 397 GAAGAAGATGAAAGGTTTGTGTCTGAGTGGAAGAAGTATCTAGAATACGAGGCGGATGTG 456
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 381 GAAGAAGATGAAAGGTTTGTGTCTGAGTGGAACAAGTATCTAGAATACGAGGCGGATGTG 440
Query 457 ATGAAGGATGTTCCTGGATGGAAAGTCGGTGAAAACGTGTACAATTCTGGTCGTTGGATG 516
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 441 ATGAAGGATGTTCCTGGATGGAAAGTCGGTGAAAACGTATACAATTCTGGTCGTTGGATG 500
Query 517 CCTCCAGCTACCGGAGAGCTTCGTCCTGATGTCTGGTAAAATTTCAATGGCTCCTTTTGA 576
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 501 CCTCCAGCTACTGGAGAGCTTCGTCCTGATGTCTGGTAAAATATCAATGGCTCCTTTTGA 560
Query 577 TGATGATGAATGAATGTTTGTTTAAGCATTTTAGAACCTTGATGTTTGTTGTCTCTATAT 636
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 561 TGATGATGAATGAATGTTTGTTTAAGCATTTTAGAACCTTGATGTTTGTTATCTCT-T-T 618
Query 637 TTCCATCGTATAATAAGAGAAATGATACATACACAGTTCATGTATTGCTGGT 688
||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 619 TTCCATCGTATAATAAGAGAAATGATACATACACAGTTCATGTATTGGTGGT 670
Score = 108 bits (58), Expect = 8e-23
Identities = 67/71 (94%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 714 TTTTTCCCTCATTCACTTATTTCTGTCAATGACGA-AATCAGTTTCAGACACATGTTCAT 772
||||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 670 TTTTTACCTCATTCACATATTTCTGTCAATGAC-AGAATCAGTTTCAGACACATGTTCAT 728
Query 773 ATATTTTGTTT 783
|||||||||||
Sbjct 729 ATATTTTGTTT 739
> Ahg470446 jgi|Araly1|470446|fgenesh2_kg.1__400__AT1G04630.1
Length=677
Score = 547 bits (296), Expect = 4e-155
Identities = 388/434 (89%), Gaps = 0/434 (0%)
Strand=Plus/Plus
Query 120 GAAGATGACGGAGGCGATGATAAGGAAGAAGCCAGGAATGGCGAGTGTGAAGGATATGCC 179
|||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 99 GAAGATGACGGAGGCGGTGATTAGGAATAAGCCAGGAATGGCGAGTGTGAAGGACATGCC 158
Query 180 GTTGCTTCAGGATGGTCCACCACCTGGTGGATTCGCGCCGGTCCGATATGCTCGCCGGAT 239
| |||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 159 GCTGCTTCAGGATGGTCCGCCACCGGGTGGGTTCGCACCGGTCCGATATGCTCGCCGGAT 218
Query 240 CTCCAACACGGGACCTAGCGCCATGGCTATTTTCCTTACCGTTTCCGGTGCTTTTGCTTG 299
||||||||||| ||||| || ||||| |||||||| |||||||| ||||| ||||||||
Sbjct 219 ATCCAACACGGGTCCTAGTGCTATGGCCATTTTCCTAACCGTTTCTGGTGCCTTTGCTTG 278
Query 300 GGGCATGTACCAAGTTGGTCAGGGCAACAAAATCCGCAGGGCGTTGAAGGAAGAGAAGTA 359
||| |||||||| || || ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 279 GGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGGGCATTGAAGGAAGAGAAATA 338
Query 360 CGCTGCACGTAGAGCAATTCTACCGATTCTTCAAGCTGAAGAAGATGAAAGGTTTGTGTC 419
||||| ||||||||||| || || ||||||||||| |||||||||||||||||||||||
Sbjct 339 TGCTGCTCGTAGAGCAATACTTCCCATTCTTCAAGCAGAAGAAGATGAAAGGTTTGTGTC 398
Query 420 TGAGTGGAAGAAGTATCTAGAATACGAGGCGGATGTGATGAAGGATGTTCCTGGATGGAA 479
||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 399 TGAGTGGAAAAAGTATCTGGAATATGAGGCTGATGTAATGAAGGATGTTCCGGGATGGAA 458
Query 480 AGTCGGTGAAAACGTGTACAATTCTGGTCGTTGGATGCCTCCAGCTACCGGAGAGCTTCG 539
||| ||||| || ||||||||||||||||| |||||||| || ||||| || || || ||
Sbjct 459 AGTTGGTGAGAATGTGTACAATTCTGGTCGCTGGATGCCACCGGCTACTGGGGAACTCCG 518
Query 540 TCCTGATGTCTGGT 553
||||||||||||||
Sbjct 519 TCCTGATGTCTGGT 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5