BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33450.1 Length=626 Score E Sequences producing significant alignments: (Bits) Value Ahg933932 jgi|Araly1|933932|scaffold_401920.1 721 0.0 Ahg919125 jgi|Araly1|919125|scaffold_100406.1 390 5e-108 > Ahg933932 jgi|Araly1|933932|scaffold_401920.1 Length=474 Score = 721 bits (390), Expect = 0.0 Identities = 441/465 (95%), Gaps = 6/465 (1%) Strand=Plus/Plus Query 23 GAAGTAACAGCAACCAAAAATGACGACAATGGCGACACAAGGCGCTTGGCTACGAATGAC 82 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 2 GAAGTAACAGCAACCAAAAATGACGACAATGGCGACGCAAGGGGCTTGGCTACGAATGAC 61 Query 83 CTCATCAGCC-AAGTCCATGACCAAGTCAACCGTGACTTCAAAGGAGCTTGGATTCCTCA 141 ||||||| || |||||| || | ||||||||||||||||||||||||||||| ||||||| Sbjct 62 CTCATCA-CCGAAGTCCGTGGCTAAGTCAACCGTGACTTCAAAGGAGCTTGGGTTCCTCA 120 Query 142 CCTCCCAGCTCAGCGGCTTAAGAATCTCAT-ATACTCCCAGTGACGTCATCAACCGTATC 200 ||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||| Sbjct 121 CCTCCCAGCTCAGCGGCATAAGAATCTC-TCACGCTCCCAGTGACGTCATCAACCGTATC 179 Query 201 TCCCTTCCTTCGTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACT 260 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCCGTTCCTTCCTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACT 239 Query 261 GGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTCTCTAACCACAAGACCAAGAAGTTG 320 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 240 GGGAAGAAAGCAAACAGAGCAAACAAAGTTTCTTTCTCTAACCACAAGACCAAGAAGTTG 299 Query 321 CAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAA 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAA 359 Query 381 CTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAGAACGGACTCGACGCTGTTGCC 440 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 360 CTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAAAACGGACTTGATGCTGTTGCC 419 Query 441 AAGAAAGCCGGCATTGATCTTCGCAAGAAATAGATA-T-GATGAT 483 |||||||||||||| || ||||||||||||||| || | |||||| Sbjct 420 AAGAAAGCCGGCATAGACCTTCGCAAGAAATAGCTAATTGATGAT 464 > Ahg919125 jgi|Araly1|919125|scaffold_100406.1 Length=461 Score = 390 bits (211), Expect = 5e-108 Identities = 310/358 (87%), Gaps = 6/358 (2%) Strand=Plus/Plus Query 120 TCAAAGGAGCTTGGATTC-CTCACCTCCCAGCTCAGCGGCTTAAGAATCTCATATACTCC 178 |||| |||||| || ||| || || ||||| ||||||||| ||||||| ||| || | Sbjct 84 TCAACGGAGCTCGG-TTCTCTGACTTCCCAACTCAGCGGCGTAAGAATTTCACATGGTTA 142 Query 179 CAGTGACGTCATCAACCGTATCTCCCTT-CCTT-CGTTCCCCGGGATTCAGCCAATCGTC 236 |||||| | |||||| ||||| |||| ||| || ||||| | || || |||||| Sbjct 143 CAGTGATGCCATCAATCGTAT-AACCTTATCTTCCG-TCCCCTCTCTCCAACCCATCGTC 200 Query 237 GCACGTAGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTC 296 || |||||||||||||||||||| |||||||||||||||||||| |||||||| || ||| Sbjct 201 GCTCGTAGAATCTGCCCTTTTACGGGGAAGAAAGCAAACAGAGCTAACAAAGTGTCCTTC 260 Query 297 TCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTACAATACAAGAGAGTTTGGTGG 356 |||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| Sbjct 261 TCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTGCAATACAAAAAAGTTTGGTGG 320 Query 357 GAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAG 416 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 321 GAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACCAAGGCCTTGAAGACCATTGAG 380 Query 417 AAGAACGGACTCGACGCTGTTGCCAAGAAAGCCGGCATTGATCTTCGCAAGAAATAGA 474 ||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||| |||| Sbjct 381 AAGAATGGCCTCGATGCTGTTGCCAAGAAAGCTGGCATAGATCTTCGTAAGAAGTAGA 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22911873117 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5