BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33630.1 Length=1620 Score E Sequences producing significant alignments: (Bits) Value Ahg933950 jgi|Araly1|933950|scaffold_401938.1 2252 0.0 > Ahg933950 jgi|Araly1|933950|scaffold_401938.1 Length=1488 Score = 2252 bits (1219), Expect = 0.0 Identities = 1398/1485 (94%), Gaps = 9/1485 (1%) Strand=Plus/Plus Query 42 AGAGAGAGAAGAAGAAAAATGCATTTGAGTGAGAATGAAGGTGTCGAAGGTAACACCTTC 101 |||||||| || || | |||||||||||||||||||||||| |||||||| ||||||||| Sbjct 10 AGAGAGAG-AG-AG-AGAATGCATTTGAGTGAGAATGAAGGCGTCGAAGGCAACACCTTC 66 Query 102 GTGGTCACTGGAGGTCTTGGCTTCGTCGGTGCAGCTCTCTGCTTAGAGCTCGTTCGTCGT 161 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 67 GTGGTCACTGGAGGTCTTGGCTTCGTCGGTGCCGCTCTCTGTTTAGAGCTCGTTCGTCGT 126 Query 162 GGTGCTCGCCAAGTTCGCTCTTTTGACCTCCGTC-ACTCTTCTCCTTGGTCCGATGATCT 220 |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| || Sbjct 127 GGTGCTCGCCAAGTCCGCTCTTTTGACCTCCG-CAACTCTTCTCCTTGGTCCGATGACCT 185 Query 221 CAAAAACAGTGGCGTTCGCTGCATTCAAGGTGATGTGACTAAGAAACAAGATGTGGATAA 280 |||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| Sbjct 186 CAAAAACAGTGGCGTTCGCTGCATCCAAGGTGATGTGACGAAGAAAGGAGATGTGGATAA 245 Query 281 CGCTTTAGATGGAGCAGACTGTGTTTTGCATCTTGCTTCTTATGGTATGTCTGGGAAGGA 340 ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| || Sbjct 246 GGCTCTAGATGGAGCTGACTGTGTTTTGCATCTTGCTTCTCATGGTATGTCTGGGAAAGA 305 Query 341 GATGCTTCGGTTTGGTCGTTGTGATGAGGTTAACATCAACGGGACTTGTAATGTCTTGGA 400 |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 306 GATGCTTCAGTTTGGTCGTTGTGACGAGGTTAACATAAACGGGACTTGTAATGTCTTGGA 365 Query 401 AGCTGCGTTTAAACATGAGATTACAAGAATTGTGTATGTTAGCACTTACAATGTTGTGTT 460 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 366 AGCTGCGTTTAAACATGAGATTACAAGAATTGTGTATGTCAGCACTTATAATGTTGTGTT 425 Query 461 TGGTGGTAAAGAGATTCTCAATGGTAATGAAGGTTTGCCTTATTTCCCTCTTGATGATCA 520 ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 426 TGGTGGTAAGGAGATTCTGAATGGTAATGAAGGTTTGCCGTATTTCCCTCTTGATGACCA 485 Query 521 TGTTGATGCATATAGTCGAACTAAATCGATTGCAGAACAGTTGGTTCTCAAGAGTAATGG 580 ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 486 TGTTGATGCCGATGGTCGAAGTAAATCGATTGCAGAACAGTTGGTTCTCAAGAGTAATGG 545 Query 581 TCGA-CCTTTTAAGAATGGAGGCAAACGGATGTATACATGTGCGATTCGTCCAGCGGCTA 639 || |||||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 546 -CGGGCCTTTTAAGAATGGGGGCAAACGGATGTACACATGTGCAATTCGTCCAGCGGCTA 604 Query 640 TATATGGACCTGGCGAAGATAGGCATCTTCCTAGGATTGTTACTCTAACAAAGTTGGGTT 699 ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| Sbjct 605 TATATGGACCTGGCGAAGATAGGCATCTTCCTAGGATAGTTAATCTAGCAAAGTTGGGTT 664 Query 700 TGGCTCTCTTCAAGATCGGTGAACCGAGTGTCAAATCAGACTGGATTTATGTCGAAAACC 759 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 665 TGGCTCTCTTCAAGATCGGTGAACCGAGTGTCAAAACAGACTGGATTTATGTCGAAAACC 724 Query 760 TTGTCCTAGCAATCATCTTGGCAAGTATGGGACTCTTGGATGACATTCCTGGCAGAGAAG 819 ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| Sbjct 725 TTGTCCTAGCAATCATCCTGGCAAGCATGGGACTCTTGGACGACATTCCTGGCAGAGAAG 784 Query 820 GACAACCTGTTGCTGCTGGTCAACCATATTTTGTCTCTGACGGTTACCCGGTGAATACCT 879 |||| || || |||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 785 GACATCCCGTCGCTGCTGGTCAACCATATTTTGTCTCTGACGGTTCCCCAGTGAATACCT 844 Query 880 TTGAGTTTCTGCGTCCTTTACTAAAAAGTTTAGACTATGACCTGCCCAAGTGTACAATCT 939 |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 845 TTGAGTTTCTACGTCCCTTACTAAAAAGTTTAGACTATGACCTGCCCAAGTTTACAATCT 904 Query 940 CTGTACCTTTTGCGCTGTCCTTGGGTAAGATCTTCCAAGGTTTCTACACTGTGCTATATC 999 ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 905 CTGTACCTTTTGCACTGTCCTTGGGTAAGATCTTCCAAGGTGTCTACACTTTGCTATATC 964 Query 1000 CATGGCTATCAAAGAGCTGGTTACCACAGCCCCTTGTTCTTCCTGCTGAAGTCTACAAGG 1059 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 CATGGCTATCAAACAGCTGGTTACCACAGCCCCTTGTTCTTCCTGCTGAAGTCTACAAGG 1024 Query 1060 TCGGTGTTACCCATTATTTCTCATATCTTAAAGCCAAGGAGGAGCTTGGATATGTTCCAT 1119 | ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1025 TTGGTGTCACCCATTATTTCTCATATCTCAAAGCCAAGGAAGAGCTTGGATATGTTCCAT 1084 Query 1120 TCAAGAGCTCCAAGGAAGGTATGGCTGCAACTATCTCATACTGGCAGGAAAGGAAGCGGA 1179 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || Sbjct 1085 TCAAGAGCTCCAAGGAAGGAATGGCTGCAACTATCTCATACTGGCAGGAAAGGAAACAGA 1144 Query 1180 GATCTTTAGACGGTCCAACCATGTTCACTTGGATAGCTGTTACAATAGGAATGTCTGCTC 1239 |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| Sbjct 1145 GATCTTTAGACGGTCCAACCATATTCACTTGGATAGCTGTTACACTAGGAATGTCAGCTC 1204 Query 1240 TTTTTGCTGCCGGATGGTTACCCGACATAGGACCTGTGCCTTTCTTAAGAGCCATACACC 1299 |||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1205 TTTTTGCTGCGGGATGGTTACCCGACATAGGACCTGTGCCTTTCTTACGAGCCCTACACC 1264 Query 1300 TCTTCTTTTTCCGGACAATCACGATTGTAAAGGCTGTCTTCATTGTAGCAGTGGTACTAC 1359 ||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||||| Sbjct 1265 TCTTCTTCTTCCGGACAATCACGATTGTGAAGGCTGTCTTCATCGTATCAGTGGTACTAC 1324 Query 1360 ATGTTGCAGAAGGAATCTATGCGTGG-TTTCTGGCTAAACGAGTCGACCCAGGAAATGCA 1418 |||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||| ||| Sbjct 1325 ATGTTGGAGAAGGAATCTATGCGTTGCTTT-TGGCTAAACGAGTCGACCCAGGAAACGCA 1383 Query 1419 ATGGGGTGGTTCTTGCAAACCAGCGCTCTCGGGTTTTTCTCAATGCGGTTTTTATTGAAG 1478 ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1384 ATGGGCTGGTTCTTGCAAACCTGCGCTCTCGGGTTTTTCTCAATGCGGTTTTTATTGAAG 1443 Query 1479 AGAGCGAAAGAGCACCAGATTTAAACCCAGCCTTGTTTTGATGTT 1523 ||||| ||||| ||||||||||||| |||||||| |||||||||| Sbjct 1444 AGAGCCAAAGACCACCAGATTTAAAACCAGCCTTATTTTGATGTT 1488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60715850530 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5