BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33730.1 Length=2523 Score E Sequences producing significant alignments: (Bits) Value Ahg933960 jgi|Araly1|933960|scaffold_401948.1 3644 0.0 Ahg473025 jgi|Araly1|473025|fgenesh2_kg.1__2979__AT1G28180.1 176 7e-43 > Ahg933960 jgi|Araly1|933960|scaffold_401948.1 Length=2236 Score = 3644 bits (1973), Expect = 0.0 Identities = 2148/2234 (96%), Gaps = 6/2234 (0%) Strand=Plus/Plus Query 74 AATCTCCAGCTAACCACCGATGAAGCGAACAATCAACGAAGTCGTCGGATCTACCTCCGT 133 |||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| ||||| Sbjct 2 AATCTCCAGCCACCCACCGATGAAGCGATCAATCAATGAAGTCGTCGGATCTACTTCCGT 61 Query 134 CAATACTCTCGATTCCTCCATTGCTAAGAAGCCTGTCTTCCTCACCAAAAAACAGCGGGA 193 ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| || Sbjct 62 CAATACTCTCGATTCCTCCGTTGGTAAGAAGCCTGTCTTCCTCACCAAAGCTCAGCGCGA 121 Query 194 AGAGTTAGCCCTAAAACGCCGCCAGGATCAAATCTCCGAGCAACGTGTCCGTCGTGAGCA 253 ||| |||||||||||||||| ||||||||||||||||||||||||||||| || || || Sbjct 122 AGAACTAGCCCTAAAACGCCGTCAGGATCAAATCTCCGAGCAACGTGTCCGCCGCGAACA 181 Query 254 ACTTGGTCGCCCCGAGCCCGAGACGGAAGATGTCTCCAATGGAGATACCAATCGGGATAA 313 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 182 GCTAGGTCGCCCCGAGCCCGAGACTGAAGATGTCTCCAATGGAGATACCAATCGGGATAA 241 Query 314 GGATcgagatagagatcgggaccgagaccgagaacgtgaccgagatagggagagagatag 373 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 242 GGATCGAGATAGAGATCGGGACCGAGACCGAGAACGTGACCGCGACAGGGAGAGAGATAG 301 Query 374 agggcgagatcgagaccgcgatagggatagagacagggatagggatagagagcgagagag 433 |||||||||||||||||||||||||||| || | ||||| ||||||||||||||||| Sbjct 302 AGGGCGAGATCGAGACCGCGATAGGGAT--AG--A--GATAGAGATAGAGAGCGAGAGAG 355 Query 434 agaCCGTGAGCGTGACCGTCGTGAACGAGATCGTGAACCGGATCGGAGAAATAGAGAAAA 493 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 356 AGACCGTGAGCGTGACCGTCGTGAACGAGATCGTGAACCGGATCGGAGAAATAGAGATAG 415 Query 494 GGAGAGGGAAGAGGAGGTTAAGGCTAGGGAGAAGGCGCGTGTTGAGAAATTAGTTGAGAG 553 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 416 GGAGAGGGAAGAGGAGGTTAAGGCTAGGGAGAAGGCGCGGGTTGAGAAATTAGTTGAGAG 475 Query 554 AGAGAAGGAGAAGGAACTTGACGCCATTAAAGAGCAGTATCTTGGAGGTAAGAAGCCGAA 613 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 AGAGAGGGAGAAGGAACTTGACGCCATTAAAGAGCAGTATCTTGGAGGTAAGAAGCCGAA 535 Query 614 GAAGAGAGTCATTAGGCCAAGCGAGAAGTTTCGTTTCTCTTTTGATTGGGAAAACACTGA 673 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 536 GAAGAGAGTCATTAGGCCCAGCGAGAAGTTTCGTTTCTCTTTCGATTGGGAAAACACTGA 595 Query 674 GGATACTTCTAGGGATATGAACGTTCTTTACCAAAACCCTCATGAAGCTCAGCTTCTCTT 733 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 596 GGATACTTCTAGGGATATGAACGTTCTTTACCAAAACCCTCATGAAGCTCAGCTTCTGTT 655 Query 734 TGGGAGAGGGTTTCGTGCTGGTATGGACCGTCGTGAGCAGAAGAAACAAGCGGCTAAGCA 793 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 656 TGGGAGAGGGTTTCGTGCTGGTATGGACCGTCGTGAGCAGAAGAAACAAGCGGCCAAGCA 715 Query 794 TGAGAAAGAGATGCGAGACGAGATTCGTAAGAAAGATGGTATTGTAGAGAAACCAGAGGA 853 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 716 TGAGAAAGAGATGCGAGACGAGATTCGTAAGAAAGATGGTATTGTAGAGAGACCTGAGGA 775 Query 854 AGCTGCTGCTCAGAGAGTGAGAGAAGAAGCTGCTGATACTTATGACTCGTTTGATATGAG 913 ||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 776 AGCGGCTGCTCAGAGAGTTCGAGAAGAAGCTGCGGATACTTATGACTCGTTTGATATGAG 835 Query 914 GGTTGACAGGCATTGGAGTGATAAGAGATTAGAGGAGATGACTGAAAGGGATTGGCGTAT 973 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GGTTGATAGGCATTGGAGCGATAAGAGATTAGAGGAGATGACTGAAAGGGATTGGCGTAT 895 Query 974 TTTCAGAGAAGATTTCAATATCTCTTACAAGGGTTCGAGGATTCCTCGTCCGATGAGGAG 1033 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 896 TTTCAGAGAAGATTTCAATATCTCTTACAAGGGTTCGAGGATTCCTCGTCCAATGAGGAG 955 Query 1034 CTGGGAAGAGAGTAAGCTTACTTCTGAGCTTTTGAAAGCTGTGGAGAGAGCTGGATACAA 1093 |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 956 CTGGGAAGAGAGCAAGCTCACTTCTGAGCTTTTGAAAGCTGTAGAGAGAGCTGGATACAA 1015 Query 1094 GAAACCTTCTCCTATTCAAATGGCAGCTATACCACTTGGACTGCAACAGCGTGATGTTAT 1153 |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 1016 GAAACCTTCTCCAATTCAAATGGCTGCTATACCTCTTGGACTGCAACAGCGTGATGTTAT 1075 Query 1154 CGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTACCCATGTTAGCTTA 1213 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1076 CGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTGCCTATGTTAGCTTA 1135 Query 1214 CATCTCTAGATTGCCACCGATGAGCGAAGAGAATGAGACTGAGGGGCCTTATGCTGTTGT 1273 |||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| Sbjct 1136 CATCTCTAGATTGCCACCGATGAGCGAAGAGAATGAGACTGAAGGACCGTATGCTGTTGT 1195 Query 1274 TATGGCCCCTACTAGAGAGCTTGCTCAGCAGATTGAGGAGGAAACTGTTAAGTTTGCGCA 1333 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TATGGCCCCTACTAGGGAGCTTGCTCAGCAGATTGAGGAGGAAACTGTTAAGTTTGCGCA 1255 Query 1334 TTATCTAGGGTTTAGGGTGACTTCTATTGTGGGTGGTCAGTCGATTGAGGAACAGGGGTT 1393 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1256 TTATCTAGGGTTTAGGGTGACTTCTATTGTAGGTGGTCAGTCGATTGAGGAACAGGGGTT 1315 Query 1394 GAAGATAACACAAGGGTGTGAGATTGTGATTGCTACTCCGGGTCGTCTGATTGATTGCCT 1453 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1316 GAAGATAACACAAGGGTGTGAGATTGTGATTGCTACTCCAGGTCGTCTGATTGATTGCCT 1375 Query 1454 TGAGAGGCGTTATGCGGTGTTGAACCAGTGTAACTATGTGGTTCTTGATGAGGCAGATCG 1513 ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1376 TGAGAGGCGGTATGCGGTGTTGAATCAGTGTAACTACGTGGTTCTTGATGAGGCAGATCG 1435 Query 1514 GATGATTGACATGGGTTTCGAGCCACAGGTTGCAGGTGTGTTAGATGCGATGCCTTCAAG 1573 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1436 GATGATAGACATGGGTTTCGAGCCACAGGTTGCAGGTGTGTTAGATGCGATGCCTTCAAG 1495 Query 1574 TAATTTGAAACCTGAGAACGAAGAAGAAGAGCTTGATGAAAAGAAGATTTATAGAACTAC 1633 ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 1496 TAATTTGAAACCTGAGAACGAAGAAGAAGAGCTTGATGAAAAGAAAATTTACAGAACCAC 1555 Query 1634 ATATATGTTTAGTGCTACAATGCCTCCTGGGGTAGAGCGGCTAGCTCGGAAGTACTTGAG 1693 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1556 ATATATGTTTAGTGCTACAATGCCTCCTGGGGTAGAGCGGCTAGCTAGGAAGTACTTGAG 1615 Query 1694 GAACCCGGTTGTTGTCACCATTGGTACTGCTGGAAAGACTACGGATTTGATTTCGCAACA 1753 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1616 GAACCCGGTTGTTGTCACCATTGGTACTGCAGGAAAGACCACGGATTTGATTTCGCAACA 1675 Query 1754 TGTTATTATGATGAAAGAATCAGAGAAATTCTTCAGATTGCAGAAACTGCTCGATGAGCT 1813 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1676 CGTTATTATGATGAAAGAATCAGAGAAATTCTTCAGATTGCAGAAACTGCTCGATGAGCT 1735 Query 1814 CGGCGAGAAGACTGCCATTGTGTTTGTTAACACAAAGAAAAATTGTGACTCGATTGCTAA 1873 |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1736 CGGCGATAAAACTGCCATTGTGTTTGTTAACACAAAGAAAAATTGTGACTCTATTGCTAA 1795 Query 1874 GAATCTGGATAAGGCAGGGTACCGTGTCACGACCTTGCACGGTGGGAAATCACAAGAGCA 1933 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1796 GAATCTTGATAAGGCAGGGTACCGTGTCACGACCTTGCACGGTGGGAAATCGCAAGAGCA 1855 Query 1934 GAGAGAAATCAGCTTAGAAGGATTCAGAGCAAAGAGATACAACGTTCTTGTTGCAACAGA 1993 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1856 GAGAGAGATCAGCTTAGAAGGATTCAGAGCAAAGAGATACAACGTTCTTGTTGCAACAGA 1915 Query 1994 TGTTGTAGGACGTGGAATTGATATTCCGGATGTGGCTCATGTCATAAACTACGACATGCC 2053 ||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 1916 TGTTGTAGGTCGTGGAATCGATATTCCAGATGTGGCTCACGTCATAAACTACGACATGCC 1975 Query 2054 TAAACATATAGAGATGTACACACATCGTATCGGACGTACAGGACGTGCTGGGAAAAGTGG 2113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1976 TAAACATATAGAGATGTACACACATCGTATCGGACGTACAGGACGTGCTGGGAAAAGTGG 2035 Query 2114 TGTTGCGACTTCGTTCTTGACACTTCATGATACCGAAGTCTTCTATGATCTGAAGCAGAT 2173 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 2036 TGTTGCGACTTCGTTCTTAACTCTTCATGATACAGAAGTCTTCTATGATCTGAAGCAGAT 2095 Query 2174 GCTTGTTCAGAGCAACAGTGCGGTGCCTCCTGAGCTGGCGAGACATGAAGCGTCCAGATT 2233 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2096 GCTTGTTCAGAGCAACAGTGCGGTGCCTCCTGAGCTGGCGAGACATGAAGCATCCAGATT 2155 Query 2234 CAAACCAGGTACGGTTCCTGATAGACCCCCAAGACATAGTGACACTGTCTATATAAATTG 2293 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2156 CAAACCAGGTACGGTTCCTGATAGACCCCCAAGACATAGTGACACTGTTTATATAAATTG 2215 Query 2294 AGTCGATAGGCTCT 2307 |||||||||||||| Sbjct 2216 AGTCGATAGGCTCT 2229 > Ahg473025 jgi|Araly1|473025|fgenesh2_kg.1__2979__AT1G28180.1 Length=1916 Score = 176 bits (95), Expect = 7e-43 Identities = 211/264 (80%), Gaps = 20/264 (8%) Strand=Plus/Plus Query 534 GTTGAGAAATTAGTTG-AGAGAGAGAAGGAGAAGGA-ACTTGACGCCATTAAAGAGCAGT 591 ||||||||||||| | || | || | ||||| || | || ||||||| |||||||| | Sbjct 270 GTTGAGAAATTAG-AGAAGCTAAAGCACGAGAAAGAGA-TTAACGCCATGAAAGAGCAAT 327 Query 592 ATCTT-GGAGGTAAGAAGCCGAAGAAGAGAGTCAT--T-AGGCCAAGCGAGAAGTTT-CG 646 | ||| ||| || ||| || || ||||||||||| | | ||| ||| |||| ||| || Sbjct 328 A-CTTAGGATCTACGAAACCTAATAAGAGAGTCATCATCAAGCCGAGCAAGAA-TTTCCG 385 Query 647 TTTCTCTTTTGATTGGGAAAACACTGAGGATACTTCTA--GG-GATATGAACGTTCTTTA 703 || || |||||||| |||||||| |||||||| | || |||||||| ||||| || Sbjct 386 -TT-TC----GATTGGGAGAACACTGAAGATACTTCGAGTGGAGATATGAATGTTCTCTA 439 Query 704 CCAAAACCCTCATGAAGCTCAGCTTCTCTTTGGGAGAGGGTTTCGTGCTGGTATGGACCG 763 ||||||||||||||||||||||||||| ||||||||||||||||| || || || ||||| Sbjct 440 CCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGGAGAGGGTTTCGCGCGGGAATAGACCG 499 Query 764 TCGTGAGCAGAAGAAACAAGCGGC 787 ||||||||||| |||| || ||| Sbjct 500 CCGTGAGCAGAAAAAACTAGTGGC 523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95111341765 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5