BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33800.1 Length=1143 Score E Sequences producing significant alignments: (Bits) Value Ahg482332 jgi|Araly1|482332|fgenesh2_kg.4__1392__AT2G33800.1 1779 0.0 Ahg343774 jgi|Araly1|343774|fgenesh1_pg.C_scaffold_4000116 701 0.0 > Ahg482332 jgi|Araly1|482332|fgenesh2_kg.4__1392__AT2G33800.1 Length=1136 Score = 1779 bits (963), Expect = 0.0 Identities = 1084/1141 (95%), Gaps = 13/1141 (1%) Strand=Plus/Plus Query 10 TCTGGTGCTGGATAAGCCTTTTGCTTCATTCTCACTTCCTTCCTCATCCAAAAAAGCTCC 69 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || Sbjct 1 TCTGGTGCTGGATAAGCCTTTTGCTTCGTTCTCACTTCCTTCCTCATCC-AAAAAG--CC 57 Query 70 TCCA-TTTCAATGGCGACAGCATCAGctctctcatcactctcttcactctcactccacac 128 |||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 58 TCCATTTTCAATGGCGACAGCATCAGCTCTCTCTTCACTCTCTTCTCTCTCACTCCACAC 117 Query 129 ccg-a--acctcttctctcatctcctcttcctccacaaaatccatcgtctctttctcctc 185 ||| | |||||||||||||||||||| |||||||||||| |||||||||| |||||||| Sbjct 118 CCGAACCACCTCTTCTCTCATCTCCTCCTCCTCCACAAAACCCATCGTCTCCTTCTCCTC 177 Query 186 cttcctcAACCGCCGCTTCTCATCTCTCACTCTCGTCAAAGCCTCATCGACCGATACCGA 245 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 178 CTTCCTCAACCGCCGCGTCTCATCTCTCACTCTCGTCAAAGCCTCATCGAACGAAACCGA 237 Query 246 AACCATCTTCTTCGAAGACGAAACACCAGAAATAACCGCAAATGTCGTCTTCGACCCACC 305 ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 238 AACTTTCTTCTTCGAAGACGAAACCCCAGAAATAACCGCCAATGTCGTCTTCGACCCACC 297 Query 306 AATTGCTCCCGAAGGATTCGTCTCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 365 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 298 AGTTGCTCCCGAAGGATTCGTCGCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 357 Query 366 GGAAGAGATCGCTACCGCTTTTGAAGAGCTCTATGGACCTGCGTATAGTGGTGAGAGTAT 425 |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 358 GGAAGAGATCGCGACGGCTTTTGAAGAGCTCTATGGTCCTGCGTATAGTGGTGAGAGTAT 417 Query 426 GCTTGGGAAAGATATTTATGTGATGGACTCAAAGCATAAGAAGAGTTCAGGTATTGGTGG 485 |||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 418 GCTTGGGAAAGACATTTATGTGATGGATTCGAAGCATAAGAAGAGTTCAGGTATTGGTGG 477 Query 486 GAAGCCAAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 545 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GAAGCTGAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 537 Query 546 AGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAAGTTTAGAGCTATCGTTGTTGTTGG 605 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 538 AGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAAGTTTAGAGCTATTGTTGTTGTTGG 597 Query 606 TGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 665 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TGATAAGCAGGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 657 Query 666 TCAGAAATCTGCTATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTATTC 725 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 658 TCAGAAATCTGCCATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTACTC 717 Query 726 TACTTTCCCTCACAGATCAGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGC 785 ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 718 TACTTTCCCCCACAGATCGGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCGGC 777 Query 786 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTTAGGATTGTGCTAGAGATGGCAGG 845 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 778 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTCAGGATCGTGCTAGAGATGGCAGG 837 Query 846 AGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAACAATGCTCTCAACAATGCGAGAGC 905 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 838 AGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAACAATGCTCTCAACAATGCGAGAGC 897 Query 906 CACTCTTGCAGCAGTACAACAGATGAGACAGTTCCGCGATGTTGCACAAGAGCGTGGAAT 965 ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 898 CACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCGCGATGTTGCTCAAGAGCGTGGAAT 957 Query 966 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1017 Query 1026 TGTTGAGATTTCTTGTAA--TGATGTAATTCATGAGAAAA-TATGTTTATTTTGAAATAG 1082 |||||||||| ||||||| | |||||||||||||||||| ||||||||||||||||||| Sbjct 1018 TGTTGAGATT-CTTGTAAAATTATGTAATTCATGAGAAAAATATGTTTATTTTGAAATAG 1076 Query 1083 TAAATCCTTTCTTCTCCCATAAAAGTTCACA-TTGACCGATTCTATTTCAGAATGCTATA 1141 |||||||||||||| ||| |||||||| || |||||| |||||||| |||||||||||| Sbjct 1077 CAAATCCTTTCTTCTTCCACAAAAGTTC-CAATTGACCAATTCTATTACAGAATGCTATA 1135 Query 1142 G 1142 | Sbjct 1136 G 1136 > Ahg343774 jgi|Araly1|343774|fgenesh1_pg.C_scaffold_4000116 Length=675 Score = 701 bits (379), Expect = 0.0 Identities = 441/469 (94%), Gaps = 12/469 (3%) Strand=Plus/Plus Query 522 AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAA 581 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 219 AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAA 278 Query 582 GTTTAGAGCTATCGTTGTTGTTGGTGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAA 641 |||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 279 GTTTAGAGCTATTGTTGTTGTTGGTGATAAACAGGGGAATGTTCGTGTTGGTTGTGCTAA 338 Query 642 GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCTATTGATGCTAGGAGAAACATTGT 701 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 339 GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCCATTGATGCTAGGAGAAACATTGT 398 Query 702 TCAAGTTCCTATGACTAAGTATTCTACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC 761 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 399 TCAAGTTCCTATGACTAAGTACTCCACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC 458 Query 762 AGCCAAGGTGATGCTTAGACCTGCTTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGT 821 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 459 AGCCAAGGTGATGCTTAGACCGGCTTCACCAGGTACTGGTCTGATTGCTGGAGGAGCGGT 518 Query 822 TAGGATTGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAA 881 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 519 CAGGATCGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAA 578 Query 882 CAATGCTCTCAACAATGCGAGAGCCACTCTTGCAGCAGTACAACAGATGAGACAGTTCCG 941 |||||| | |||||||||||||| ||||| |||||||||||||||||||| Sbjct 579 CAATGC----------G--AGAGCCACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCG 626 Query 942 CGATGTTGCACAAGAGCGTGGAATCCCCATGGAAGAACTCTGGAAGTGA 990 ||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 627 CGATGTTGCTCAAGAGCGTGGAATCCCCATGGAAGAACTCTGCAAGTGA 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42621421206 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5