BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33810.1 Length=981 Score E Sequences producing significant alignments: (Bits) Value Ahg482334 jgi|Araly1|482334|fgenesh2_kg.4__1394__AT2G33810.1 1369 0.0 > Ahg482334 jgi|Araly1|482334|fgenesh2_kg.4__1394__AT2G33810.1 Length=959 Score = 1369 bits (741), Expect = 0.0 Identities = 869/928 (94%), Gaps = 20/928 (2%) Strand=Plus/Plus Query 65 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATGCATGTATGCATATACAAAATAAT 124 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 41 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATTCATGTATGCATATACAAAATAAT 100 Query 125 AGAGCACTAAAGCTTGTTCGTACTCTTTTTTACACAACATGCTAATAATTTTTATACCTT 184 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 101 AGAGCACTAAAGCTTGTTCGTACTTTTTTTTACAGAACATGCTAATAATTTTTATACCTT 160 Query 185 AGGAGTGAAATTTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 244 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 161 AGGAGTGAAAATTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 220 Query 245 TGGGGCTCCTTTATATCTCTTCCAATGGTTACTTTTAC-T--TC--C-TCTTCTTCTCTT 298 ||||||||||||||||||||||||||| |||||| ||| | || | |||||||||||| Sbjct 221 TGGGGCTCCTTTATATCTCTTCCAATGTTTACTTGTACTTCCTCTTCGTCTTCTTCTCTT 280 Query 299 CTTGTTCCATCTTTCATGT----GAGAGAGAGAGTTGAATTTTGCAGATGAGTATgagaa 354 |||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 281 CTTGTTCCCTCTTTCATGTGAGAGAGAGAGAGAGTTGAAATTTGCAGATGAGTATGAGAA 340 Query 355 gaagcaaagcggaagggaagaggagcttacgagaactgagtgaggaagaggaagaagaag 414 |||||||||||||||| |||||||| |||| |||| ||||||||||||||| || || | Sbjct 341 GAAGCAAAGCGGAAGGTAAGAGGAGTTTACAAGAAATGAGTGAGGAAGAGG-AG--GACG 397 Query 415 aagaaactgaagatgaagatacttttgaagaagaagaggctttggagaagaagcagaaag 474 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 398 AAGAAACAGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAG 457 Query 475 GTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 534 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 458 CTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 517 Query 535 AAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATG 594 | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| || Sbjct 518 AGGCCAAACAGTACCACAAACGACATAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTG 577 Query 595 TTCGGATCTCTGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGCGCTCA 654 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 578 TTCGGATCTATGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGAGCTCA 637 Query 655 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 638 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 697 Query 715 GGCGGAAAAGCACAACTGACTAAAGACGGTGAAACGTGTGAGATCCCGGTTTGAAGGTTA 774 ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| Sbjct 698 GGCGGAAAAGCACAACTGAATAAAGACGGTGAAAGGTGTGAGATCCCAATTTGAAGGTTA 757 Query 775 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 817 Query 835 TGTCTCTGTCTGTTTCTCCATATTACCTGTAATCAAAGCTATCTGCTAAACCTACGACAT 894 ||| || ||| |||| | |||||||||| |||||||||||||||||||||||| ||||| Sbjct 818 TGTATCC-TCTCTTTC-C-ATATTACCTGCAATCAAAGCTATCTGCTAAACCTATGACAT 874 Query 895 GGTTAAATAAATGCATTGAGACTT-AGTAAATGCTTGAAGAAATTATGTGTAATAACTCT 953 | ||||||||||||||| |||||| | |||||| || ||| ||| |||||||| | || | Sbjct 875 GATTAAATAAATGCATTAAGACTTGA-TAAATGGTTCAAGGAAT-ATGTGTAAGA-CTGT 931 Query 954 TTAAACTTGTCAAATGTTATTTCAAGCC 981 ||||||||| ||||||||||||||||| Sbjct 932 TTAAACTTGGAAAATGTTATTTCAAGCC 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36445508652 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5