BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33830.2 Length=676 Score E Sequences producing significant alignments: (Bits) Value Ahg482337 jgi|Araly1|482337|fgenesh2_kg.4__1397__AT2G33830.2 765 0.0 > Ahg482337 jgi|Araly1|482337|fgenesh2_kg.4__1397__AT2G33830.2 Length=609 Score = 765 bits (414), Expect = 0.0 Identities = 560/625 (90%), Gaps = 32/625 (5%) Strand=Plus/Plus Query 12 TACTTCACACTTGACACAATTCTATCCAAAATCAA-CCC-a--aa-a-a-aaGAAAGAAA 64 ||||||||||||||||||||||||||||||||||| ||| | || | | |||||| ||| Sbjct 1 TACTTCACACTTGACACAATTCTATCCAAAATCAACCCCAAGCAATACAGAAGAAAAAAA 60 Query 65 TATGTGGGATGAAACTGTAGCCGGACCTAAACCGGAGCATGGCCTTGGCCGCCTCCGCAA 124 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 61 GATGTGGGATGAAACTGTAGCCGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTCCGCAA 120 Query 125 TAAGATCACCACCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGTAAAAC 184 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 TAATATCACCGCCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGCAAAAC 180 Query 185 TGTGGCGGCGGTGGCCGGG-AGTCCTGGAACTCCGACGACGCCAGGATCGGCGCGTAAGG 243 ||||||||| || | |||| ||||| || ||||||||||| ||||||||||||||||||| Sbjct 181 TGTGGCGGCAGTTG-CGGGAAGTCCCGGGACTCCGACGACACCAGGATCGGCGCGTAAGG 239 Query 244 AAAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACTAGAGGAATGGGCA 303 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 240 AGAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACCAGAGGAATGGGAA 299 Query 304 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 359 Query 364 GCGACGACACTAGGAGCAAGCACCGTTGAGCCGA-GAGGGTAGAGTGACATGAGAATGAT 422 ||||||| |||||||||||||||||||||||||| |||| ||||||||||| || |||| Sbjct 360 GCGACGATACTAGGAGCAAGCACCGTTGAGCCGATGAGGACAGAGTGACATGCGAGTGAT 419 Query 423 GTAAAATAATTATGTTCTTTACGCCACGTGTTTATGTTCTGTTTCGTCTATTTTGGCTAT 482 || |||| | ||||||||||||||||||||||| |||||||||||| | Sbjct 420 GTCAAAT---------C-----GCCACGTGTTTATGTTCTGTTTCTTCTATTTTGGCTGT 465 Query 483 ATGT-GCAATCTTTTATTTG-CTTCATGTCGTTTG-TGT-T---TGTTAGTGACCGTTGA 535 || | |||||||||||||| |||| |||||||| | | | |||||||||||||||| Sbjct 466 AT-TCGCAATCTTTTATTTTACTTCTTGTCGTTTAATTTGTGGATGTTAGTGACCGTTGA 524 Query 536 TTTCCACCATCTGGGTTAGTTTTTAGCTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 595 | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 525 TCTCCACCATCTGGGTTGGTTTTTAACTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 584 Query 596 TAATATTTTTACTGTTCGGTAATAT 620 |||| ||| |||||||| ||||||| Sbjct 585 TAATGTTTCTACTGTTCTGTAATAT 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24818018967 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5