BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34250.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482367 jgi|Araly1|482367|fgenesh2_kg.4__1427__AT2G34250.1 3081 0.0
Ahg473141 jgi|Araly1|473141|fgenesh2_kg.1__3095__AT1G29310.1 1749 0.0
> Ahg482367 jgi|Araly1|482367|fgenesh2_kg.4__1427__AT2G34250.1
Length=1897
Score = 3081 bits (1668), Expect = 0.0
Identities = 1834/1910 (96%), Gaps = 28/1910 (1%)
Strand=Plus/Plus
Query 18 GAAAATGGATTATAAGGTGACCTTCGTCTTTGGTTGACCATCAAAAACTACAACGCTCTT 77
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GAAAATGGATTATAAGGTGACCTTCGTCTTTGGTTGACCATC-AAAACTACAACGCTCTT 59
Query 78 TCTCCGTAGGAAAGGGGAA-GC----AAAT-AAATTATCGAAGCCCACTGGTTTCGGAGC 131
||||||||||||||||||| || |||| |||||||||||| ||| ||||||||||||
Sbjct 60 TCTCCGTAGGAAAGGGGAACGCAAATAAATAAAATTATCGAAG-CCATTGGTTTCGGAGC 118
Query 132 TGATCGGTCTCTATTTCTCTCTTCATA-CATAT-CTCAAGCAGATAAAGTTGATCGGATA 189
||||||||||||||||||||| | | | | | | |||||||||||||| |||||||||||
Sbjct 119 TGATCGGTCTCTATTTCTCTCGT-A-AGCTTCTCCTCAAGCAGATAAACTTGATCGGATA 176
Query 190 CTAGAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATT-CTTGGC-TTTTCT 247
|||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |
Sbjct 177 CTAGAATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCCTT-GCGTTTT-T 234
Query 248 GCCTGAGGTTCAGAGTGCTGATAGGAAGGTTCCATTCAGAGAGAAGGTTATCTACACTGT 307
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 235 GCCTGAGGTTCAGAGTGCTGACAGGAAGGTGCCATTCAGAGAGAAGGTTATCTACACTGT 294
Query 308 CATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCAC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCAC 354
Query 368 CACCGGTGCGGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGT 427
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GACTGGTGCTGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGT 414
Query 428 CATGGAGCTCGGTATTACTCCTATTGTTACATCTGGACTTGTGATGCAACTCTTGGCTGG 487
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 415 CATGGAGCTTGGTATTACTCCTATTGTCACATCTGGACTTGTGATGCAACTCTTGGCTGG 474
Query 488 TTCCAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCCCTCTTGAATGGTGC 547
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 475 TTCCAAGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCCCTCTTGAATGGTGC 534
Query 548 TCAGAAGCTTCTAGGTATTCTGATTGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGG 607
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 535 TCAGAAGCTTCTAGGTATTCTGATCGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGG 594
Query 608 AATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTTCAGCT 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 AATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTCCAGCT 654
Query 668 TTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAACTCCTTCAGAAGGGATATGGTCT 727
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 655 TTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAGCTCCTTCAGAAGGGATATGGTCT 714
Query 728 CGGATCAGGAATCTCCCTTTTCATTGCCACCAACATTTGTGAAAGCATTATCTGGAAGGC 787
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 CGGATCAGGAATCTCCCTTTTCATTGCCACCAACATCTGTGAAAGCATTATCTGGAAGGC 774
Query 788 ATTTAGCCCAACTACCATCAACACCGGGCGTGGAGCTGAGTTTGAAGGTGCTGTTATTGC 847
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 775 ATTTAGCCCAACTACCATCAACACTGGACGTGGAGCTGAGTTTGAAGGTGCCGTTATTGC 834
Query 848 ACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTA 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTA 894
Query 908 CCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGT 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGT 954
Query 968 GATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACA 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACA 1014
Query 1028 ACAGGGTTCTTACCCAATCAAGCTGTTCTACACCTCTAACATGCCCATCATCCTCCAATC 1087
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1015 ACAGGGTTCTTACCCAATCAAGCTGTTTTACACCTCTAACATGCCCATCATCCTCCAATC 1074
Query 1088 CGCCCTCGTCTCAAATCTTTACTTCATTTCTCAGCTTCTCTACCGGAAGTTCAGCGGAAA 1147
||| || |||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1075 CGCTCTTGTCTCAAATCTTTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAA 1134
Query 1148 TTTCTTTGTAAACCTTTTGGGACAATGGAAAGAATCTGAGTACAGTGGACAATCTATTCC 1207
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1135 TTTCTTTGTAAACCTTTTGGGACAGTGGAAAGAATCTGAGTACAGTGGGCAATCCATTCC 1194
Query 1208 AGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGTTTCTCTGACATGGCAGCTCA 1267
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1195 AGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGCTTCTCTGACATGGCAGCTCA 1254
Query 1268 CCCGTTCCATGCACTGTTCTACATCGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAA 1327
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1255 CCCGTTCCATGCACTGTTCTACATTGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAA 1314
Query 1328 GACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACA 1387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACA 1374
Query 1388 ACAAATGGTGATGCCAGGACACAGAGAATCAAACTTACAGAAGGAACTGAACAGATACAT 1447
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||
Sbjct 1375 ACAAATGGTGATGCCAGGACACAGAGAGTCAAACTTGCAGAAGGAACTGAACAGGTATAT 1434
Query 1448 CCCAACAGCAGCAGCTTTTGGAGGAGTTTGTATCGGTGCACTTACCGTTTTGGCTGATTT 1507
||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||||
Sbjct 1435 CCCAACAGCAGCAGCTTTTGGAGGAGTGTGTATCGGTGCACTCACAGTTCTGGCTGATTT 1494
Query 1508 CATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTA 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTA 1554
Query 1568 TTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAACTCGGCTTCTTCGGGTTCTAAGTTAG 1627
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1555 TTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAGCTCGGCTTCTTCGGGTTCTAAGTTAG 1614
Query 1628 CTTAAAGAAGGTGTAAA-CTTTGCCTGAGGCAAAAAAGCAGAGCAGAAGAGGCTTTAGCT 1686
||||||||||||||||| |||||| |||| |||||| |||||||||||||||||||||||
Sbjct 1615 CTTAAAGAAGGTGTAAAACTTTGC-TGAGACAAAAA-GCAGAGCAGAAGAGGCTTTAGCT 1672
Query 1687 TCTGTGCCCACCTCAAACACAGACAATTTGTGGTGGCACTT-GGGTTAGACTACtttttt 1745
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 1673 TCTGTGCCCACCTCAAACA--GACAATTTGTGGTGGCACTTTGGGGTAGACTACTTTTTT 1730
Query 1746 ttgttgttgttgaaacgaaattttctctttagtcatttatgtttttttgttactttttaC 1805
|| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1731 TTTTTGTTGTTCAAACGAAATTTTCGCTTTAGTCATTTATGTTTTTTTGTTACTTTTAA- 1789
Query 1806 AAGTTAA-AAAA-CTTATGTGATAGACGCTTTTCTAATGTATGTTTCTAGGAATTTCACT 1863
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 AAGTTAAGAAAAACTTATGTGATAGACGCTTTTCTAATGTATGTTTCTAGGAATTTCACT 1849
Query 1864 CTTTGACCCA-AATAAACAAATTTACAGTTTTGAATACAAAGCAATTTAT 1912
||| |||| | ||||||||| ||||||||||||||| |||||||||||||
Sbjct 1850 CTT-GACC-AGAATAAACAATTTTACAGTTTTGAATTCAAAGCAATTTAT 1897
> Ahg473141 jgi|Araly1|473141|fgenesh2_kg.1__3095__AT1G29310.1
Length=1680
Score = 1749 bits (947), Expect = 0.0
Identities = 1272/1432 (89%), Gaps = 10/1432 (1%)
Strand=Plus/Plus
Query 194 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCTTGGCTTTTCTGCCTGA 253
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 86 AATGGGAGGAGGATTTAGAGTTTTGCATTTGGTTAGGCCATTCTTGGCTTTTCTTCCAGA 145
Query 254 GGTTCAGAGTGCTGATAGGAAGGTTCCATTCAGAGAGAAGGTTATCTACACTGTCATCTC 313
||||| ||||||||||||||| ||||||| |||||||| || |||||||||||||| ||
Sbjct 146 AGTTCAAAGTGCTGATAGGAAGATTCCATTTAGAGAGAAAGTGATCTACACTGTCATTTC 205
Query 314 TCTCTTCATCTTTC-TTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCACCACCG 372
||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| || |
Sbjct 206 TCTCTTCAT-TTTCCTTGTCTGTAGTCAGCTTCCTCTATATGGGATTCATTCCACGACTG 264
Query 373 GTGCGGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGTCATGG 432
|||| ||||||||||||||||||||||||||||| || || |||||||| || || ||||
Sbjct 265 GTGCTGATCCATTCTATTGGATGCGTGTCATTCTCGCTTCGAACCGTGGGACGGTGATGG 324
Query 433 AGCTCGGTATTACTCCTATTGTTACATCTGGACTTGTGATGCAACTCTTGGCTGGTTCCA 492
||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |
Sbjct 325 AGCTCGGTATTACTCCTATTGTTACGTCTGGACTTGTGATGCAACTCTTAGCAGGTTCAA 384
Query 493 AGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCCCTCTTGAATGGTGCTCAGA 552
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 385 AGATTATTGAGGTTGACAACAATGTCCGTGAGGATCGTGCTCTCTTGAATGGTGCTCAGA 444
Query 553 AGCTTCTAGGTATTCTGATTGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGGAATGT 612
||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 445 AGCTTCTTGGGATTCTGATTGCTATTGGTGAGGCTGTTGCGTATGTTCTTTCGGGAATGT 504
Query 613 ATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTTCAGCTTTTCT 672
| ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 505 ACGGTCCTGTTGGTCAGCTCGGTGTTGGAAATGCTATTCTGATCATCCTCCAGCTTTTCT 564
Query 673 TTGCTGGAATCATTGTTATCTGCCTTGATGAACTCCTTCAGAAGGGATATGGTCTCGGAT 732
|||| ||||| || |||||||| ||||| || || |||||||||||||||||||| || |
Sbjct 565 TTGCCGGAATTATCGTTATCTGTCTTGACGAGCTTCTTCAGAAGGGATATGGTCTTGGCT 624
Query 733 CAGGAATCTCCCTTTTCATTGCCACCAACATTTGTGAAAGCATTATCTGGAAGGCATTTA 792
| || ||||| || ||||| || || || || |||||||||||||||||||| |||||||
Sbjct 625 CTGGGATCTCTCTATTCATAGCAACTAATATCTGTGAAAGCATTATCTGGAAAGCATTTA 684
Query 793 GCCCAACTACCATCAACACCGGGCGTGGAGCTGAGTTTGAAGGTGCTGTTATTGCACTGT 852
|||| || || ||||||||||| |||||||||||||||||||| ||||| || || |||
Sbjct 685 GCCCCACAACAATCAACACCGGTCGTGGAGCTGAGTTTGAAGGCGCTGTGATCGCGTTGT 744
Query 853 TCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTACCGGC 912
|||||||||||||||| |||||||| |||||||| || ||| | |||||||| |||||||
Sbjct 745 TCCATATGCTGATAACTAAGTCCAATAAGGTTGCTGCGCTCAGACAAGCTTTTTACCGGC 804
Query 913 AAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGTGATCT 972
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 805 AGAACCTTCCAAATGTTACCAACTTGCTTGCAACAGTCTTGATCTTCTTGATTGTTATCT 864
Query 973 ACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAACAGG 1032
|||||||||| |||||||| || ||||| ||||| ||||||| ||| ||||| |||||||
Sbjct 865 ACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAGGTCAAAGAGTGCTCGTGGCCAACAGG 924
Query 1033 GTTCTTACCCAATCAAGCTGTTCTACACCTCTAACATGCCCATCATCCTCCAATCCGCCC 1092
|||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || || |
Sbjct 925 GTTCTTACCCGATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTCCAGTCTGCTC 984
Query 1093 TCGTCTCAAATCTTTACTTCATTTCTCAGCTTCTCTACCGGAAGTTCAGCGGAAATTTCT 1152
|||||||||| || |||||||| ||||||||||||||| |||||||||| ||||||||||
Sbjct 985 TCGTCTCAAACCTCTACTTCATCTCTCAGCTTCTCTACAGGAAGTTCAGTGGAAATTTCT 1044
Query 1153 TTGTAAACCTTTTGGGACAATGGAAAGAATCTGAGTACAGTGGACAATCTATTCCAGTTA 1212
|||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 1045 TTGTAAACCTATTGGGACAGTGGAAAGAATCAGAGTACAGTGGACAATCTATACCAGTTA 1104
Query 1213 GTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGTTTCT-CTGACATGGCAGCTCACCCG 1271
||||||| || ||| | ||||||||||| |||||||| | | || ||||||||||| ||
Sbjct 1105 GTGGTCTTGCATACTTAATCACAGCTCCGGCAAGTTT-TGCCGATATGGCAGCTCATCCA 1163
Query 1272 TTCCATGCACTGTTCTACATCGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAAGACA 1331
|||||||| |||||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct 1164 TTCCATGCGCTGTTCTATATCGTCTTCATGCTCACTGCTTGCGCCCTATTCTCAAAGACC 1223
Query 1332 TGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACAACAA 1391
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1224 TGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGTAGCTAAGCAGCTCAAGGAACAACAA 1283
Query 1392 ATGGTGATGCCAGGACACAGAGAATCAAACTTACAGAAGGAACTGAACAGATACATCCCA 1451
||||||||||| ||||||||||| || |||||||||||||| |||||| | |||||||||
Sbjct 1284 ATGGTGATGCCGGGACACAGAGAGTCTAACTTACAGAAGGAGCTGAACCGGTACATCCCA 1343
Query 1452 ACAGCAGCAGCTTTTGGAGGAGTTTGTATCGGTGCACTTACCGTTTTGGCTGATTTCATG 1511
|||||||| || ||||||||||| || || ||||| || || ||||||||||||||||||
Sbjct 1344 ACAGCAGCTGCATTTGGAGGAGTGTGCATTGGTGCGCTCACTGTTTTGGCTGATTTCATG 1403
Query 1512 GGAGCCATCGGGTC-GGGAACCGGAATTCTG--TTGGCGGTCACGATCATATACCAGTAT 1568
||||| || ||||| |||| | ||||| || ||| | ||||| |||||||| ||||||
Sbjct 1404 GGAGCAATTGGGTCAGGGA-CTGGAAT-CTTACTTG-CAGTCACAATCATATATCAGTAT 1460
Query 1569 TTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAACTCGGCTTCTTCGGGTTCT 1620
|| || ||||||||||||||||||||||| || || |||||||| || ||||
Sbjct 1461 TTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGGCTTCTTTGGATTCT 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5