BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G34410.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2 3081 0.0
Ahg473199 jgi|Araly1|473199|fgenesh2_kg.1__3153__AT1G29890.2 1022 0.0
> Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2
Length=2321
Score = 3081 bits (1668), Expect = 0.0
Identities = 1834/1911 (96%), Gaps = 23/1911 (1%)
Strand=Plus/Plus
Query 34 AACCAACAACCGTTTGGGTGAGCTTGACGAGAACGACGTCGCACCCGCCATTTTCTCCAT 93
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AACCAACAACCGTTTGGGTGAGCTTGACGAGAACGACGTCGCCCCCGCCATTTTCTCCAT 60
Query 94 CCTTGAAGCAACACcttcttcacttcagatctcttcttcttcttcttcttcttcttcttc 153
||||||||||||||||||||||||| ||| || |||||||||||
Sbjct 61 CCTTGAAGCAACACCTTCTTCACTTGAGA-----------------TC-TCTTCTTCTTC 102
Query 154 ttcttcttTGCTCGCACCTTCCGTGCTAT-TGTATTTCTAGGGTTTCGGATCCTGTGCCT 212
|||||||||| |||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct 103 TTCTTCTTTGTTCGCACCTTCCGTGCT-TCTCTATTCCTAGGGTTTCGGATCCTGTGCCT 161
Query 213 TACCTTAGATCCGACGGTGGAGTAGAAATCACTCTCCCTGTCTCTTCCCTTCTTTTTTGT 272
|||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 162 TACCTTGGATCCGACGGTGGAGTTGAAATCACTCTCCCTGTCTCTTCCCATCTTTTTGGT 221
Query 273 TTCCAG-TTTTTGATTGAAGATCCCTTCGTGGATCCACTATAATGGCGGATTCTCAGCCA 331
|| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 222 TTTCAGTTTTTTGATTGAAGATCCCTTCGTGGATCCAATATAATGGCGGATTCTCAGCCA 281
Query 332 ATCACGCCTGGTCAGGTTTCGTTTCTACTCGGAGTCATTCCTGTCTTCATAGCATGGATT 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 ATCACGCCTGGTCAGGTTTCGTTTCTACTCGGAGTCATTCCTGTCTTCATAGCATGGATA 341
Query 392 TACTCAGAGTTTCTAGAGTATAAGAGGTCTTCATTGCACTCTAAAGTTCATTCAGATAAT 451
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 342 TACTCAGAGTTTCTAGAGTATAAGAGGTCTTCATTGCACTCTAAAGTCCATTCAGATAAT 401
Query 452 AATTTGGTTGAACTT-GGTGAGGTAAAAAACAAGGAAGATGAAGGAGTAGTTTTACTTGA 510
|||||||| ||| || ||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 402 AATTTGGTGGAA-TTGGGTGAAGTGAAAAACAAGGAAGATGAAGGAGCAGTTTTACTTGA 460
Query 511 AGGAGGTCTTCCAAGATCAGTCTCTACAAAGTTTTATAACTCACCTATCAAAACAAACTT 570
|||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 461 AGGAGGTCTTGCAAGATCTGTATCTACAAAGTTTTATAACTCACCTATCAAAACAAACTT 520
Query 571 GATTAGATTTCTGACGCTGGAAGACTCTTTCTTGATTGAAAATCGAGCAACCTTGAGAGC 630
|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 521 GATTAGGTTTCTGACGCTCGAAGACTCTTTCTTGATTGAACATCGAGCAACCTTGAGAGC 580
Query 631 GATGGCTGAGTTTGGGGCTATTCTTTTTTACTTTTATATTAGTGATCGAACAAGCTTGCT 690
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 581 GATGGCTGAGTTTGGGGCGATTCTTTTTTACTTTTATATTAGCGATCGAACAAGCTTGCT 640
Query 691 TGGAGAGTCTAAAAAGAATTACAACAGAGATCTTTTCCTCTTTCTCTACTGTCTTCTCAT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TGGAGAGTCTAAAAAGAATTACAACAGAGATCTTTTCCTCTTTCTCTACTGTCTTCTCAT 700
Query 751 CATAGTTTCAGCCATGACATCCTTGAAGAAACACAATGACAAATCACCTATAACAGGAAA 810
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 701 CATAGTGGCATACATGACATCCTTGAAGAAACACAATGACAAATCACCTATTACAGGAAA 760
Query 811 ATCCATTCTCTATCTTAATCGTCACCAGACTGAAGAGTGGAAGGGATGGATGCAGGTTCT 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ATCCATTCTCTATCTTAATCGTCACCAGACTGAAGAGTGGAAGGGATGGATGCAGGTTCT 820
Query 871 ATTTCTTATGTATCATTACTTTGCTGCGGCTGAGATATATAATGCAATCAGGGTTTTCAT 930
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 ATTTCTGATGTATCATTACTTTGCTGCGGCTGAGATATATAATGCAATCAGGGTTTTCAT 880
Query 931 TGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGA 990
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 881 TGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCGTATTACTATATCAGAAAGGA 940
Query 991 TTTCTCCCTAGCACGATTTACTCAGATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TTTCTCCCTAGCACGATTTACTCAGATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAG 1000
Query 1051 CTGCATTATTCTCAATAATGATTATATGCTGTACTACATCTGTCCAATGCACACTCTGTT 1110
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1001 CTGCATTATTCTCAATAATGATTATATGTTATACTACATCTGTCCAATGCACACTCTGTT 1060
Query 1111 CACTCTTATGGTGTATGGAGCCCTTGGTATCTTCAGTCGATATAACGAAATACCATCAGT 1170
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1061 CACTCTCATGGTGTATGGAGCCCTTGGTATCTTCAGTCGGTACAACGAAATACCATCAGT 1120
Query 1171 AATGGCTTTGAAGATTGCTTCATGCTTTCTCGTGGTTATCGTGATGTGGGAGATTCCTGG 1230
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1121 AATGGCTTTGAAGATTGCTTCATGCTTTCTCGTGGTTATCGTGATGTGGGAGATCCCTGG 1180
Query 1231 CGTTTTTGAGATTTTCTGGAGTCCTTTAACATTCTTACTGGGATACACTGATCCAGCTAA 1290
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1181 AGTTTTTGAGATTTTCTGGAGTCCTCTAACATTCTTACTGGGATACACTGATCCGGCTAA 1240
Query 1291 ACCAGAACTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATG 1350
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 ACCAGATCTACCACTTTTACATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATG 1300
Query 1351 GATCATTGGAATGATATATGCCTATTTCCATCCCACTGTAGAGAGATGGATGGAGAAATT 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GATCATTGGAATGATATATGCCTATTTCCATCCCACTGTAGAGAGATGGATGGAGAAATT 1360
Query 1411 GGAGGAGTGTGATGCCAAGAGAAAGATGTCAATAAAGACAAGCATAATTGCAATTTCCTC 1470
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1361 GGAGGAGTGTGATGCCAAGAGAAAGATGTCAATAAAGACAAGCATAATTGCACTTTCCTC 1420
Query 1471 ATTTGTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAA 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 ATTTGTTGGTTACCTATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAA 1480
Query 1531 ATATCATCCCTACACATCGTGGATTCCAATAACCGTCTACATCTGTCTGCGAAATTCTAC 1590
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1481 ATATCACCCCTACACATCGTGGATTCCAATAACCGTCTACATCTGTCTGCGAAATTCCAC 1540
Query 1591 ACAACAGCTGCGTAATTTCTCCATGACACTATTTGCGTGGCTCGGCAAGATTACTCTGGA 1650
|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1541 ACAACAGCTGCGGAATTTCTCCCTGACACTCTTTGCGTGGCTCGGCAAGATTACTCTGGA 1600
Query 1651 AACCTATATTTCTCAGTTTCACATCTGGTTAAGATCGAATGTGCCAAATGGACAGCCTAA 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 AACCTATATTTCTCAGTTTCACATCTGGTTAAGATCGAATGTGCCAAATGGACAGCCTAA 1660
Query 1711 GTGGCTATTATGCATTATTCCAGAATACCCAATGCTCAACTTCATGCTCGTCACGGCCAT 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 GTGGCTATTATGCATTATTCCAGAATACCCAATGCTCAACTTCATGCTCGTCACGGCCAT 1720
Query 1771 CTATGTCTTGGTGTCCCACCGACTTTTCGAGCTTACAAACACGTTAAAGTCTGTTTTCAT 1830
||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1721 CTATGTCTTGGTGTCTCATCGACTTTTCGAGCTTACAAATACGTTAAAGTCTGTTTTCAT 1780
Query 1831 ACCAACAAAAGACGACAAGAGGCTGCTCCACAATGTTCTCGCTGGAGCTGCCATCTCGTT 1890
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1781 ACCAACAAAAGACGACAAGAGACTGCTCCACAATGTTCTTGCTGGAGCTGCCATCTCGTT 1840
Query 1891 CTGTTTATATTTAACATCTCTCATTCTTCTCCAGATCCCACACTAACCATG 1941
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1841 CTGTTTATATTTAACAGCTCTCATTCTTCTCCAGATCCCACACTAACCATG 1891
> Ahg473199 jgi|Araly1|473199|fgenesh2_kg.1__3153__AT1G29890.2
Length=1833
Score = 1022 bits (553), Expect = 0.0
Identities = 816/941 (87%), Gaps = 26/941 (3%)
Strand=Plus/Plus
Query 1013 CAGATGATGTGGCGTCTTAACTTATTTGTGGCGTTTAGCTGCATTATTCTCAATAATGAT 1072
|||||||||||||| |||||||| |||||||||||| | |||||||||||||| |||||
Sbjct 900 CAGATGATGTGGCGACTTAACTTTTTTGTGGCGTTTTGTTGCATTATTCTCAACAATGAC 959
Query 1073 TATATGCTGTACTACATCTGTCCAATGCACACTCTGTTCACTCTTATGGTGTATGGAGCC 1132
||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 960 TATATGCTGTACTACATTTGTCCAATGCACACTCTATTCACTCTGATGGTCTATGGAGCA 1019
Query 1133 CTTGGTATCTT-CAGTCGA-TATAACGAAATACCATCAGTAATGGCTTTGAAGATTGCTT 1190
|||||||| || ||||| | |||||||||||| ||||||| |||||| ||||||||||||
Sbjct 1020 CTTGGTAT-TTACAGTC-AGTATAACGAAATAGCATCAGTGATGGCTCTGAAGATTGCTT 1077
Query 1191 CATGCTTTCTCGTGGTTATCGTGATGTGGGAGATTCCTGGCGTTTTTGAGATTTTCTGGA 1250
|||||||||||||||||||| | |||||||||||||| || ||||||||||| |||||||
Sbjct 1078 CATGCTTTCTCGTGGTTATCCTTATGTGGGAGATTCCAGGAGTTTTTGAGATCTTCTGGA 1137
Query 1251 GTCCTTTAACATTCTTACTGGGATACACTGATCCAGCTAAACCAGAACTACCACTTTTAC 1310
||||| | ||||||||||||| || || ||||||||||||||||| || |||| | |||
Sbjct 1138 GTCCTCTGGCATTCTTACTGGGGTATACAGATCCAGCTAAACCAGACCTTCCACGTCTAC 1197
Query 1311 ATGAATGGCACTTCAGATCAGGACTTGACCGCTACATATGGATCATTGGAATGATATATG 1370
|||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||
Sbjct 1198 ATGAATGGCATTTCAGATCCGGGCTTGATCGCTACATATGGATCATTGGCATGATATATG 1257
Query 1371 CCTATTTCCATCCCACTG------TAGAGAGATGGATGGAGAAATTGGAGGAGTGTGATG 1424
| ||||| || ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1258 CATATTTTCACCCCACTGTAATTCTAGAAAGATGGATGGAGAAATTGGAGGAGTGTGATG 1317
Query 1425 CCAAGAGAAAGATGTCAATAAAGACAAGCATAATTGCAATTTCCTCATTTGTTGGTTACC 1484
| || |||| ||||||||| ||||| |||||||| | |||||| ||||| | ||||||||
Sbjct 1318 CTAAAAGAAGGATGTCAATCAAGACTAGCATAATAGGAATTTCTTCATTCGCTGGTTACC 1377
Query 1485 TATGGTATGAATACATATACAAGCTTGACAAGGTTACATACAACAAATATCATCCCTACA 1544
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1378 TTTGGTATGAATACATCTACAAGCTAGACAAGGTTACATACAACAAATATCATCCCTACA 1437
Query 1545 CATCGTGGATTCCAATAACCGTCTACATCTGTCTGCGAAATT-CTACACAACAGCTGCGT 1603
|||| |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||
Sbjct 1438 CATCTTGGATTCCAATAACTGTCTACATCTGTCTGCGAAATTGC-ACACAACAGCTACGG 1496
Query 1604 AATTTCTCCATGACACTATTTGCGTGGCTCGGCAAGATTACTCTGGAAACCTATATTTCT 1663
| ||| ||| | ||||| ||||||||||||||||| || ||||| || ||||| |||||
Sbjct 1497 AGTTTTTCCCTAACACTCTTTGCGTGGCTCGGCAAAATAACTCTCGAGACCTACATTTCA 1556
Query 1664 CAGTTTCACATCTGGTTAAGATCGAATGTGCCAAATGGACAGCCTAAGTGGCTATTATGC 1723
||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||| |
Sbjct 1557 CAGTTTCACATCTGGTTAAGATCGAGTGTGCCAAATGGGCAGCCAAAGTTGCTATTAT-C 1615
Query 1724 ATT-ATTCCAGAATACCCAATGCTCAACTTCATGCTCGTCACGGCCATCTATGTCTTGGT 1782
| | || || ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1616 AATCATCCCGGAATACCCAATGCTCAACTTCATGCTCACCACGGCCATCTATGTCTTGGT 1675
Query 1783 GTCCCACCGACTTTTCGAGCTTAC-AA-ACACGTTAAAGTCTGTTTTCATACCAACAAAA 1840
|| ||||||||||||||||| || |||| | ||| || ||||||||||| || |||
Sbjct 1676 ATCTGTTCGACTTTTCGAGCTTACCAATACAC-TAAAA-TCAGTTTTCATACCCACGAAA 1733
Query 1841 GACGACAAGA-GGCTGCTCCACAATGTTC-TCGCTG-GAGCTGCCATCTCGTTCTGTTTA 1897
|||||||| | |||| |||||||| || | | ||| | ||||| || || || ||||||
Sbjct 1734 GACGACAA-ACGGCTACTCCACAACGT-CATTGCTATG-GCTGCGATATCATTGTGTTTA 1790
Query 1898 TATTTAACATC-TCTCATTCTTCTCCAGATCCCACACTAAC 1937
||||| | | ||| ||||||||| ||||||||| ||||
Sbjct 1791 TATTTGAT-TGGTCTTATTCTTCTCTTGATCCCACATTAAC 1830
Score = 817 bits (442), Expect = 0.0
Identities = 628/719 (87%), Gaps = 7/719 (1%)
Strand=Plus/Plus
Query 301 TGGATCCACTATA-ATGGCGGATTCTCAGCCAATCACGCCTGGTCAGGTTTCGTTTCTAC 359
|||||||| || | |||| || ||| |||||||| ||||||||||||||||||||||| |
Sbjct 67 TGGATCCAGTAGATATGGTGGTTTCACAGCCAATTACGCCTGGTCAGGTTTCGTTTCTGC 126
Query 360 TCGGAGTCATTCCTGTCT-TCATAGCATGGATTTACTCAGAGTTTCTAGAGTATAAGAGG 418
| ||||| || ||| | | | ||||||||| | ||||| || ||||| || |||| ||||
Sbjct 127 TTGGAGTTATCCCTCT-TATGATAGCATGGCTATACTCGGAATTTCTTGAATATAGGAGG 185
Query 419 TCTTCATTGCACTCTAAAGTTCATTCAGATAATAATTTGGTTGAACTTGGTGA-GGTAAA 477
||||| || ||| ||||||||||||||||||| ||||||||||||||| | | ||| |
Sbjct 186 TCTTCTTTACACCCTAAAGTTCATTCAGATAAGAATTTGGTTGAACTT-GAAATGGTGAC 244
Query 478 AAACAAGGAAGATGAAGGAGTAGTTTTACTTGAAGGAGGTCTTCCAAGATCAGTCTCTAC 537
||||| || ||||||||| ||||||| | |||||||| ||||||||||| |||||| |
Sbjct 245 GAACAAAGAGGATGAAGGAACAGTTTTAATGGAAGGAGGGCTTCCAAGATCTGTCTCTTC 304
Query 538 AAAGTTTTATAACTCACCTATCAAAACAAACTTGATTAGATTTCTGACGCTGGAAGACTC 597
||||||||||| |||| | ||||||||||||||| |||| |||||||| ||||||||||
Sbjct 305 AAAGTTTTATAGCTCATCAATCAAAACAAACTTGCTTAGGTTTCTGACTTTGGAAGACTC 364
Query 598 TTTCTTGATTGAAAATCGAGCAACCTTGAGAGCGATGGCTGAGTTTGGGGCTATTCTTTT 657
||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 365 TTTCTTGCTTGAAAATCGAGCAACCTTGAGAGCAATGGCTGAGTTTGGAGCAATTCTTTT 424
Query 658 TTACTTTTATATTAGTGATCGAACAAGCTTGCTTGGAG-AGTCTAAAAAGAATTACAACA 716
|| ||||||||| |||||||||| |||||||| || | ||||||||||||||||||||
Sbjct 425 ATATTTTTATATTTGTGATCGAACTAGCTTGCTCGG-GCAGTCTAAAAAGAATTACAACC 483
Query 717 GAGATCTTTTCCTCTTTCTCTACTGTCTTCTCATCATAGTTTCAGCCATGACATCCTTGA 776
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 484 GAGACCTTTTCCTCTTTCTCTACTGTCTTCTCATCATAGTGTCAGCTATGACGTCCTTGA 543
Query 777 AGAAACACAATGACAAATCACCTATAACAGGAAAATCCATTCTCTATCTTAATCGTCACC 836
||||||||| |||||| ||||| ||||| ||||| |||||||| ||||| ||||||||||
Sbjct 544 AGAAACACACTGACAAGTCACCAATAACGGGAAAGTCCATTCTGTATCTCAATCGTCACC 603
Query 837 AGACTGAAGAGTGGAAGGGATGGATGCAGGTTCTATTTCTTATGTATCATTACTTTGCTG 896
|||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 604 AGACTGAAGAATGGAAGGGGTGGATGCAGGTTCTATTTCTAATGTATCATTATTTTGCTG 663
Query 897 CGGCTGAGATATATAATGCAATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGT 956
||| |||| | || |||||||||||||| ||||| |||| ||| || |||||||| || |
Sbjct 664 CGGTTGAGTTTTACAATGCAATCAGGGTCTTCATCGCTGGCTATGTTTGGATGACCGGTT 723
Query 957 TTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAG 1015
|||| ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 724 TTGGAAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAG 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5