BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G34420.1 Length=1045 Score E Sequences producing significant alignments: (Bits) Value Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 1275 0.0 Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 1057 0.0 Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 1026 0.0 Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 1014 0.0 Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2 82.4 6e-15 > Ahg482401 jgi|Araly1|482401|fgenesh2_kg.4__1461__AT1G29910.1 Length=798 Score = 1275 bits (690), Expect = 0.0 Identities = 722/738 (98%), Gaps = 0/738 (0%) Strand=Plus/Plus Query 119 GCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAG 178 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 4 GCATCAGATGTCCTCGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAG 63 Query 179 GGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCC 238 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 64 GGTCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTCTCC 123 Query 239 GGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCT 298 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 124 GGCGAGCCCCCGAGCTACCTTACCGGAGAGTTCCCCGGTGACTACGGATGGGACACCGCC 183 Query 299 GGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGC 358 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GGTCTATCCGCTGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGC 243 Query 359 AGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGA 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 AGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGA 303 Query 419 GTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGA 478 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 304 GTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCTGGTTCGCAGATCTTCAGCGACGGAGGA 363 Query 479 TTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCT 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 TTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCT 423 Query 539 ACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTG 598 |||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 424 ACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAAATGGCCCATTG 483 Query 599 GGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACT 658 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 GGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACT 543 Query 659 GACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATG 718 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 544 GACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGGAGGTTGGCTATG 603 Query 719 TTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAAC 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 TTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAAC 663 Query 779 CTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTC 838 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 664 CTCGCCGACCATTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTCGCCACCAACTTC 723 Query 839 GTCCCCGGAAAGTGAGCG 856 ||||||||||||| |||| Sbjct 724 GTCCCCGGAAAGTAAGCG 741 Score = 73.1 bits (39), Expect = 4e-12 Identities = 39/39 (100%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 912 ATGTAAATTTGTGAACTTTCCTTTGTGGTATCTTTGTAT 950 ||||||||||||||||||||||||||||||||||||||| Sbjct 751 ATGTAAATTTGTGAACTTTCCTTTGTGGTATCTTTGTAT 789 > Ahg473203 jgi|Araly1|473203|fgenesh2_kg.1__3157__AT1G29910.1 Length=1008 Score = 1057 bits (572), Expect = 0.0 Identities = 755/843 (90%), Gaps = 14/843 (2%) Strand=Plus/Plus Query 21 ACCaaaaaaaagaaaacacaaaaacaaaGATTAT-AATGGCTTCCTCAACCATGGCTTTG 79 ||||||||||| |||| || | || ||| ||| | |||||| ||||||| |||||| | Sbjct 22 ACCAAAAAAAA-AAAA-AC-ACAA-AAA-ATTTTCAATGGCCGCCTCAACAATGGCTCTC 76 Query 80 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAGCC--T-----GCCGCATCAGATGTCCT 132 |||||||||||||||||||||||||||||||| || | || |||||||| ||||| Sbjct 77 TCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAA-CCTTTCCCCCGCGGCATCAGAAGTCCT 135 Query 133 CGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCGCCAAGCCAAAGGGTCCATCAGGCAG 192 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 136 TGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGTCCATCAGGCAG 195 Query 193 CCCATGGTACGGATCTGACCGAGTCAAGTACTTGGGTCCATTCTCCGGCGAGCCCCCGAG 252 ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct 196 CCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGAG 255 Query 253 CTACCTTACCGGTGAGTTCCCCGGTGACTACGGATGGGACACCGCTGGTCTATCCGCCGA 312 |||||||||||| ||||||||||| |||||||||||||||||||| || || || ||||| Sbjct 256 CTACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTCTCAGCCGA 315 Query 313 CCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAGTTATCCACAGCAGATGGGCCATGCT 372 ||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 316 CCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAGTTATCCACAGCAGGTGGGCCATGCT 375 Query 373 CGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGGCTAGGAACGGAGTGAAGTTCGGAGA 432 |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| Sbjct 376 CGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGGCCAGGAACGGAGTCAAGTTCGGAGA 435 Query 433 AGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGACGGAGGATTGGACTACTTGGG 492 || ||||||||||||||||||||||||||||||||||| ||||| | || |||||||| Sbjct 436 GGCCGTTTGGTTCAAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGG 495 Query 493 CAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAGCCATTTGGGCTACTCAAGTTATCCT 552 ||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||| | Sbjct 496 AAACCCTAGCTTAGTCCACGCTCAGAGCATCTTGGCGATTTGGGCCACTCAAGTTATCTT 555 Query 553 CATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAGATGGTCCATTGGGAGAAGCAGAGGA 612 |||||||| |||||||||||||||||||| ||| |||| ||||||||||| || ||||| Sbjct 556 GATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGA 615 Query 613 CTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGGGCCTCGCTACTGACCCCGAGGCTTT 672 |||||||||||| ||||| ||||||||||||||||| | ||||| ||||| ||||| || Sbjct 616 CTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGGGTTTGGCTACCGACCCAGAGGCCTT 675 Query 673 CGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGGTTGGCTATGTTCTCTATGTTTGG 732 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 676 CGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGG 735 Query 733 ATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGACCTTTGGAGAACCTCGCCGACCATTT 792 |||||||||||||||||| ||||| || |||||||| | |||||||| || |||||||| Sbjct 736 ATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGACCGATAGAGAACCTTGCTGACCATTT 795 Query 793 GGCCGACCCAGTCAACAACAACGCTTGGGCCTTCGCCACCAACTTCGTCCCCGGAAAGTG 852 |||||| ||||| | ||||||||| |||||||||||||||||||| || ||||||||||| Sbjct 796 GGCCGATCCAGTTACCAACAACGCATGGGCCTTCGCCACCAACTTTGTTCCCGGAAAGTG 855 Query 853 AGC 855 ||| Sbjct 856 AGC 858 > Ahg482403 jgi|Araly1|482403|fgenesh2_kg.4__1463__AT2G34430.1 Length=987 Score = 1026 bits (555), Expect = 0.0 Identities = 726/808 (90%), Gaps = 13/808 (2%) Strand=Plus/Plus Query 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCT-TCGCCGGAAAGGCTGTGAAG- 112 |||||| |||| || |||||| | ||||| |||| || | ||||||||||| || ||| Sbjct 45 AATGGCCGCCTCGACAATGGCTCTCTCCTCTCCTG-CTATGGCCGGAAAGGCCGTTAAGC 103 Query 113 -----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTCG 167 || || || || || || | |||| |||||| || |||||| | || | | | Sbjct 104 TATCCCCGGCGGCCTCCGAAGTATTTGGAATCGGCCGAGTTACCATGCGCAA-A--GCCT 160 Query 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227 |||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 161 CCAAACCCACCGGTCCATCAGGCAGCCCATGGTACGGATCCGACCGAGTCAAGTACTTGG 220 Query 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287 ||||||||||||| ||||| ||||||||||| || || || ||||||||||||||||| | Sbjct 221 GTCCATTCTCCGGTGAGCCTCCGAGCTACCTCACTGGAGAATTCCCCGGTGACTACGGGT 280 Query 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347 ||||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 281 GGGACACTGCCGGTCTATCCGCAGACCCCGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 340 Query 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 341 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTGTTGG 400 Query 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467 || | || ||||| || |||||||| || |||||||||||||| |||||||||||||||| Sbjct 401 CTCGCAATGGAGTCAAATTCGGAGAGGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCA 460 Query 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527 |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 461 GCGATGGAGGATTGGACTACTTGGGCAATCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 520 Query 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 521 CCATTTGGGCCACTCAAGTGATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAA 580 Query 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647 |||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 581 ATGGCCCATTGGGAGAGGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTTGACCCATTGG 640 Query 648 GCCTCGCTACTGACCCCGAGGC-TTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 706 |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 641 GCCTTGCTACTGACCCCGAGGCGTTT-GCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGA 699 Query 707 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGA 766 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 700 AGGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAGGCCATTGTCACCGGAAAGGGA 759 Query 767 CCTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTC 826 || |||||||| || || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 760 CCGTTGGAGAATCTTGCTGACCACTTGGCCGATCCAGTCAACAACAACGCATGGGCCTTC 819 Query 827 GCCACCAACTTCGTCCCCGGAAAGTGAG 854 || ||||||||||||||||||||||||| Sbjct 820 GCTACCAACTTCGTCCCCGGAAAGTGAG 847 > Ahg473204 jgi|Araly1|473204|fgenesh2_kg.1__3158__AT1G29930.1 Length=1002 Score = 1014 bits (549), Expect = 0.0 Identities = 723/808 (89%), Gaps = 8/808 (1%) Strand=Plus/Plus Query 55 AATGGCTTCCTCAACCATGGCTTTGTCCTCCCCTGCCTTCGCCGGAAAGGCTGTGAAG-- 112 |||||| |||||||||||||| | |||||||||||||||||||||||||| || ||| Sbjct 63 AATGGCCGCCTCAACCATGGCTCTCTCCTCCCCTGCCTTCGCCGGAAAGGCCGTCAAGCT 122 Query 113 ----CCTGCCGCATCAGATGTCCTCGGAAGCGGCCGTGTGACCATGAGGAAGACTGTC-G 167 || || |||||||| ||||| ||||||||||||||||| ||||||||||| | | Sbjct 123 TTCCCCCGCGGCATCAGACGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGAC-AACTG 181 Query 168 CCAAGCCAAAGGGTCCATCAGGCAGCCCATGGTACGGATCTGACCGAGTCAAGTACTTGG 227 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 182 CCAAGCCAAAGGGCCCATCAGGCAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGG 241 Query 228 GTCCATTCTCCGGCGAGCCCCCGAGCTACCTTACCGGTGAGTTCCCCGGTGACTACGGAT 287 | |||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct 242 GCCCATTCTCTGGCGAGCCACCGAGCTACCTTACCGGAGAGTTCCCCGGAGACTACGGAT 301 Query 288 GGGACACCGCTGGTCTATCCGCCGACCCAGAGACCTTCGCCAGGAACCGTGAGCTAGAAG 347 |||||||||| || || || |||||||| ||||| ||||| ||||||||||||||||||| Sbjct 302 GGGACACCGCCGGACTCTCAGCCGACCCCGAGACATTCGCAAGGAACCGTGAGCTAGAAG 361 Query 348 TTATCCACAGCAGATGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTATTGG 407 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 362 TTATCCACAGCAGGTGGGCCATGCTCGGAGCCCTAGGCTGCGTTTTCCCTGAGCTTTTGG 421 Query 408 CTAGGAACGGAGTGAAGTTCGGAGAAGCGGTTTGGTTCAAGGCCGGTTCACAGATCTTCA 467 | ||||||||||| ||||||||||| || ||||||||||||||||| || |||||||||| Sbjct 422 CCAGGAACGGAGTCAAGTTCGGAGAGGCCGTTTGGTTCAAGGCCGGCTCTCAGATCTTCA 481 Query 468 GCGACGGAGGATTGGACTACTTGGGCAACCCGAGCTTGGTCCACGCTCAGAGCATCTTAG 527 |||| ||||| | || |||||||| ||||| |||||||||||||||||||||||||| | Sbjct 482 GCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTCCACGCTCAGAGCATCTTGG 541 Query 528 CCATTTGGGCTACTCAAGTTATCCTCATGGGAGCTGTTGAAGGCTACAGAGTCGCCGGAG 587 | |||||||| |||||||||||| | |||||||| |||||||||||||||||||| ||| Sbjct 542 CGATTTGGGCCACTCAAGTTATCTTGATGGGAGCCGTTGAAGGCTACAGAGTCGCAGGAA 601 Query 588 ATGGTCCATTGGGAGAAGCAGAGGACTTGCTTTACCCAGGTGGCAGCTTCGACCCATTGG 647 |||| ||||||||||| || ||||||||||||||||| ||||| |||||||||||||||| Sbjct 602 ATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGTAGCTTCGACCCATTGG 661 Query 648 GCCTCGCTACTGACCCCGAGGCTTTCGCAGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 707 | | ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 662 GTTTGGCTACCGACCCAGAGGCCTTCGCTGAGTTGAAGGTGAAGGAGCTCAAGAACGGAA 721 Query 708 GGTTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACCGGAAAGGGAC 767 | ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| Sbjct 722 GATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATTGTCACTGGTAAGGGAC 781 Query 768 CTTTGGAGAACCTCGCCGACCATTTGGCCGACCCAGTCAACAACAACGCTTGGGCCTTCG 827 | | |||||||| || |||||||||||||| ||||| | ||||||||| |||||||||| Sbjct 782 CGATAGAGAACCTTGCTGACCATTTGGCCGATCCAGTTACCAACAACGCATGGGCCTTCG 841 Query 828 CCACCAACTTCGTCCCCGGAAAGTGAGC 855 |||||||||| || |||||||||||||| Sbjct 842 CCACCAACTTTGTTCCCGGAAAGTGAGC 869 > Ahg482399 jgi|Araly1|482399|fgenesh2_kg.4__1459__AT2G34410.2 Length=2321 Score = 82.4 bits (44), Expect = 6e-15 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 951 AGAAATCGAACCTCTTTTTCTCTAACTGTGTTGGCGTTTTATCT 994 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2321 AGAAATCGAACCTCTTTTTCTCTAACTGTGTTGGCGTTTTATCT 2278 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38885375340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5